FvH4_1g30180

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006327
Physical Location & Seq
Reverse (-)
23845842 .. 23850952
5111 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30180.t2

Sequence Viewer

Length: 957 bp
ATGACTCTGGCCGCGCCTGGATTTTCAAGGACTTCGTTGGTCCGGTTTTGTTGTCTGGCCAAAAATGTTTTAGGGTCTCTTCCTTGTATACACAGCCAAAGCTACAGGGTAATGCCATGTTTCGTATTCACAGTCCATTCTGCAGTGGTGAGAAACTTGCCACCCACCAGATGCATGAGTAGGACTTCGTTTGAGCTCGACACCCACAATGGTGTTGTGCGGTTTTCGATTGGTAAGCCACCTGATGAAACTGGTTCCGATACACAAGAGAACAAGGTAGCTAAACGAGTTACAATGTCCAAGAAAGCCAAACTCAATGAACTACGGTTTTATCGTCTCAAGGCCAAAAAGAAGATCAACTCTCCAAACCCAGAAGTTAGGATTAGATACAAACTCGAAAAGGCGAAACGAAAGGAAGCATGGTTGATTGAGAAGTTGAGAAAATTCCTGGTTCACAAAGCTCCTGCTGAAACACATGATCCTGAAATTTTAACTGAAGAGGAAAAGCATTATCTTAAGCGAACTGGTGAGAAGAAGAAGAACTATGTACCGGTTGGAAGGCGGGGAGTATTTGGAGGGGTTGTGTTAAATATGCATCTGCATTGGAAGAAGCATGAGACAGTGAAGGTTGTTTGCAAACCTTGTAAGCCGGGACAGGTTCATGAATATGCTGATGAGCTTGCTCGGCTGAGCAAAGGCATTGTGATTGACATCAAATCTAATAATACTATAATTTTCTATCGGGGAAAGAACTATGTGCAGCCGGAATTAATGTCACCGCCAGATACACTGTCCAAAAATAAGGCGCTTGAAAAATATCGATATGAGCAGTCCCTTGAACACACAAGTCAGTTTATTGAAAAATTGGAGAAAGAACTAGAGGAATATCACCAGCATCTTGCTCGTTTTAAGAAAGTTAAAGAGGATACGACACAAGATTGTTTTATCAATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

319

Amino Acids

36.92

Weight (kDa)

9.72

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 164 - 248 4.1e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 12, 220, 562, 779
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 2 cut(s) 9, 57
AcsI RAATTY 2 cut(s) 443, 486
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 1 cut(s) 549
AflII CTTAAG 1 cut(s) 515
AgeI ACCGGT 1 cut(s) 550
AgsI TTSAA 4 cut(s) 27, 812, 839, 860
AjnI CCWGG 2 cut(s) 16, 447
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 5 cut(s) 102, 196, 281, 461, 679
AluI AGCT 5 cut(s) 102, 196, 281, 461, 679
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 3 cut(s) 81, 341, 611
AlwI GGATC 1 cut(s) 473
AoxI GGCC 3 cut(s) 9, 57, 342
ApeKI GCWGC 1 cut(s) 760
ApoI RAATTY 2 cut(s) 443, 486
AseI ATTAAT 1 cut(s) 770
AsiGI ACCGGT 1 cut(s) 550
AspLEI GCGC 2 cut(s) 16, 808
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 4 cut(s) 160, 539, 768, 881
AvaII GGWCC 1 cut(s) 40
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 772
BcgI CGANNNNNNTGC 2 cut(s) 884, 918
BciT130I CCWGG 2 cut(s) 18, 449
BciVI GTATCC 1 cut(s) 919
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 3 cut(s) 81, 341, 611
BfaI CTAG 1 cut(s) 878
BfmI CTRYAG 2 cut(s) 103, 141
BfoI RGCGCY 1 cut(s) 809
BfrI CTTAAG 1 cut(s) 515
BfuI GTATCC 1 cut(s) 919
BisI GCNGC 2 cut(s) 12, 761
BlpI GCTNAGC 1 cut(s) 689
BlsI GCNGC 2 cut(s) 13, 762
Bme1390I CCNGG 3 cut(s) 18, 449, 651
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 18, 449, 651
BmsI GCATC 3 cut(s) 161, 604, 904
Bpu1102I GCTNAGC 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 651
Bsa29I ATCGAT 1 cut(s) 820
BsaBI GATNNNNATC 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 81
BsaWI WCCGGW 2 cut(s) 42, 550
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 2 cut(s) 256, 529
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 2 cut(s) 18, 449
BseCI ATCGAT 1 cut(s) 820
BseJI GATNNNNATC 1 cut(s) 710
BseMII CTCAG 1 cut(s) 680
BseNI ACTGG 2 cut(s) 256, 529
BseXI GCAGC 1 cut(s) 772
BsgI GTGCAG 1 cut(s) 779
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 11, 59, 344
BshTI ACCGGT 1 cut(s) 550
BshVI ATCGAT 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 4 cut(s) 43, 551, 650, 764
BslFI GGGAC 2 cut(s) 666, 817
BsmAI GTCTC 3 cut(s) 81, 341, 611
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 2 cut(s) 666, 817
BsnI GGCC 3 cut(s) 11, 59, 344
Bso31I GGTCTC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 354, 478
Bsp1720I GCTNAGC 1 cut(s) 689
BspACI CCGC 4 cut(s) 12, 220, 562, 779
BspANI GGCC 3 cut(s) 11, 59, 344
BspCNI CTCAG 1 cut(s) 681
BspDI ATCGAT 1 cut(s) 820
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 1 cut(s) 473
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 550
BsrI ACTGG 2 cut(s) 256, 529
BssAI RCCGGY 1 cut(s) 550
BssMI GATC 2 cut(s) 354, 478
BssNAI GTATAC 1 cut(s) 89
Bst1107I GTATAC 1 cut(s) 89
Bst2UI CCWGG 2 cut(s) 18, 449
Bst4CI ACNGT 4 cut(s) 133, 327, 622, 792
Bst6I CTCTTC 2 cut(s) 84, 492
BstAFI CTTAAG 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 1 cut(s) 689
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 2 cut(s) 16, 808
BstKTI GATC 2 cut(s) 357, 481
BstMAI GTCTC 3 cut(s) 81, 341, 611
BstMBI GATC 2 cut(s) 354, 478
BstMWI GCNNNNNNNGC 1 cut(s) 685
BstNI CCWGG 2 cut(s) 18, 449
BstSCI CCNGG 3 cut(s) 16, 447, 649
BstSFI CTRYAG 2 cut(s) 103, 141
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 772
BstZ17I GTATAC 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 820
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 3 cut(s) 11, 59, 344
BsuTUI ATCGAT 1 cut(s) 820
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 150, 627, 788
Cac8I GCNNGC 1 cut(s) 681
CciI TCATGA 1 cut(s) 661
CfoI GCGC 2 cut(s) 16, 808
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 820
Csp6I GTAC 1 cut(s) 548
CspAI ACCGGT 1 cut(s) 550
CviAII CATG 6 cut(s) 117, 175, 420, 476, 614, 662
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 1 cut(s) 689
DpnI GATC 2 cut(s) 356, 480
DpnII GATC 2 cut(s) 354, 478
EaeI YGGCCR 2 cut(s) 9, 57
Eam1104I CTCTTC 2 cut(s) 84, 492
EarI CTCTTC 2 cut(s) 84, 492
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 516
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 16, 447
EcoT22I ATGCAT 2 cut(s) 176, 597
EcoT38I GRGCYC 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 6 cut(s) 120, 178, 423, 479, 617, 665
FaqI GGGAC 2 cut(s) 666, 817
FatI CATG 6 cut(s) 116, 174, 419, 475, 613, 661
FauI CCCGC 1 cut(s) 555
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 12, 761
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 12, 761
FspBI CTAG 1 cut(s) 878
GlaI GCGC 2 cut(s) 15, 807
GluI GCNGC 2 cut(s) 12, 761
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 3 cut(s) 11, 59, 344
HapII CCGG 4 cut(s) 43, 551, 650, 764
HhaI GCGC 2 cut(s) 16, 808
Hin1II CATG 6 cut(s) 120, 178, 423, 479, 617, 665
Hin6I GCGC 2 cut(s) 14, 806
HinP1I GCGC 2 cut(s) 14, 806
HinfI GANTC 1 cut(s) 4
HpaII CCGG 4 cut(s) 43, 551, 650, 764
HphI GGTGA 4 cut(s) 160, 539, 768, 881
Hpy166II GTNNAC 2 cut(s) 89, 454
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 482, 662
Hpy8I GTNNAC 2 cut(s) 89, 454
HpyAV CCTTC 2 cut(s) 552, 619
HpyCH4III ACNGT 4 cut(s) 133, 327, 622, 792
HpyCH4V TGCA 6 cut(s) 143, 174, 595, 601, 636, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 685
HpyF3I CTNAG 1 cut(s) 689
Hsp92II CATG 6 cut(s) 120, 178, 423, 479, 617, 665
HspAI GCGC 2 cut(s) 14, 806
Kzo9I GATC 2 cut(s) 354, 478
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 3 cut(s) 161, 604, 904
MaeI CTAG 1 cut(s) 878
MaeIII GTNAC 2 cut(s) 289, 774
MalI GATC 2 cut(s) 356, 480
MboI GATC 2 cut(s) 354, 478
MboII GAAGA 7 cut(s) 71, 364, 509, 544, 547, 550, 619
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 5 cut(s) 443, 486, 732, 767, 863
MluNI TGGCCA 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 4 cut(s) 493, 569, 874, 916
Mox20I TGGCCA 1 cut(s) 59
Mph1103I ATGCAT 2 cut(s) 176, 597
MscI TGGCCA 1 cut(s) 59
MseI TTAA 6 cut(s) 491, 516, 587, 770, 909, 918
MslI CAYNNNNRTG 2 cut(s) 210, 666
Msp20I TGGCCA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 4 cut(s) 43, 551, 650, 764
MspR9I CCNGG 3 cut(s) 18, 449, 651
MvaI CCWGG 2 cut(s) 18, 449
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 685
NciI CCSGG 1 cut(s) 651
NdeII GATC 2 cut(s) 354, 478
NlaIII CATG 6 cut(s) 120, 178, 423, 479, 617, 665
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 774
NsiI ATGCAT 2 cut(s) 176, 597
OliI CACNNNNGTG 1 cut(s) 210
PagI TCATGA 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 550
PkrI GCNGC 2 cut(s) 13, 762
PshBI ATTAAT 1 cut(s) 770
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 16, 447
PspGI CCWGG 2 cut(s) 16, 447
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 40
PstI CTGCAG 1 cut(s) 145
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
RseI CAYNNNNRTG 2 cut(s) 210, 666
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 6 cut(s) 491, 516, 587, 770, 909, 918
SatI GCNGC 2 cut(s) 12, 761
Sau3AI GATC 2 cut(s) 354, 478
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 3 cut(s) 18, 449, 651
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 3 cut(s) 161, 604, 904
SfcI CTRYAG 2 cut(s) 103, 141
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 2 cut(s) 210, 666
SmlI CTYRAG 2 cut(s) 338, 515
SmoI CTYRAG 2 cut(s) 338, 515
Sse9I AATT 5 cut(s) 443, 486, 732, 767, 863
SsiI CCGC 4 cut(s) 12, 220, 562, 779
SspMI CTAG 1 cut(s) 878
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 16, 447, 649
TaaI ACNGT 4 cut(s) 133, 327, 622, 792
TaqI TCGA 4 cut(s) 198, 227, 396, 820
TasI AATT 5 cut(s) 443, 486, 732, 767, 863
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 6 cut(s) 491, 516, 587, 770, 909, 918
Tru9I TTAA 6 cut(s) 491, 516, 587, 770, 909, 918
TscAI CASTG 3 cut(s) 150, 627, 795
TseFI GTSAC 1 cut(s) 774
TseI GCWGC 1 cut(s) 760
Tsp45I GTSAC 1 cut(s) 774
TspDTI ATGAA 4 cut(s) 261, 333, 650, 678
TspRI CASTG 3 cut(s) 150, 627, 795
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 40
VspI ATTAAT 1 cut(s) 770
XapI RAATTY 2 cut(s) 443, 486
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 1 cut(s) 878
Zsp2I ATGCAT 2 cut(s) 176, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.