Rh3DG333500

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006327
Physical Location & Seq
Forward (+)
37106813 .. 37111866
5054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG333500.1

Sequence Viewer

Length: 912 bp
ATGTGTATACAAAGGCAAAGCTACCAGGTTATGGCATCTTTCGTACTCTCAGTAGATTCTGCATTGCTGAGCCGATCAAATATGTATCAGTATCAAACTCTTCTCAGAAATTTGCCACCCACCAGATGGATGAGCAGGACTTCGTTTGAGCTCAACACAGACAATGGTGTTGTGCGGTTTTCAATTGGTAAGCCACTTGATGAAACTGGTTCCTTGACACAAGGGAAGAAGGTGGCCAAACGAGTTAAAATGTCCAAGAAGGCCAAACTGAATGAATTACGATTTTATCGTCTAAAGGCCAAAAAGAAGATCAATTCTCCAAATCCGGAAGTTAGGATTACATACAAACTTGAAAAGGCAAAACGAAAGGAAGCATGGTTAATTGAGAAGTTGAGAAAATTCCAGGTTCACAAAGCCTCTGCTGAAACACATGATCCTGAAATTTTAACTGAAGAAGAAAAGCATTATCTTAAGCGAACTGGTGAGAAAAAGAAGCACTATGTGCCAGTTGGAAGGCGGGGAGTATTTGGAGGGGTTGTTTTAAATATGCATCTGCATTGGAAGAAGCACGAGACAGTAAAGGTTATATGCAAACCTTGTAAGCCAGGACAGGTTCATGAATATGCTGATGAGCTAGCTCGGCTGAGCAAAGGCATAGTGATTGACATCAAACCTAATAATACTATAATTTTCTATCGGGGGAAGAACTATGTGCAGCCGGAAGTAATGTCACCACCAGATACACTGTCCAAAAATAAGGCGCTCGAAAAATATAGGTATGAGCAGTCCCTCGAACATACAGGTCAGTTTATTGAAAAATTGGAGAAAGAACTAGAGGAATATCACCAGCATCTTGCTCGGTTTAAGAAAGTAAAAGAGGATACGACACAAGATTGTTTGATCTATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

303

Amino Acids

35.56

Weight (kDa)

9.78

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 149 - 233 4.3e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 31, 126
AccI GTMKAC 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 2 cut(s) 175, 517
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 3 cut(s) 109, 398, 441
AcuI CTGAAG 1 cut(s) 471
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 31, 126
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 3 cut(s) 183, 353, 815
AjnI CCWGG 3 cut(s) 24, 402, 604
AluBI AGCT 4 cut(s) 21, 151, 634, 638
AluI AGCT 4 cut(s) 21, 151, 634, 638
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 3 cut(s) 234, 261, 297
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 3 cut(s) 109, 398, 441
AspLEI GCGC 1 cut(s) 763
AsuHPI GGTGA 3 cut(s) 494, 723, 836
AsuNHI GCTAGC 1 cut(s) 634
BalI TGGCCA 1 cut(s) 236
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 727
BccI CCATC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciT130I CCWGG 3 cut(s) 26, 404, 606
BciVI GTATCC 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 2 cut(s) 635, 833
BfmI CTRYAG 1 cut(s) 904
BfoI RGCGCY 1 cut(s) 764
BfrI CTTAAG 1 cut(s) 470
BfuI GTATCC 1 cut(s) 874
BisI GCNGC 1 cut(s) 716
BlpI GCTNAGC 2 cut(s) 68, 644
BlsI GCNGC 1 cut(s) 717
Bme1390I CCNGG 3 cut(s) 26, 404, 606
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 3 cut(s) 26, 404, 606
BmsI GCATC 3 cut(s) 44, 559, 859
BmtI GCTAGC 1 cut(s) 638
Bpu1102I GCTNAGC 2 cut(s) 68, 644
BsaBI GATNNNNATC 1 cut(s) 665
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 126
Bse1I ACTGG 3 cut(s) 211, 484, 506
Bse3DI GCAATG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 665
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 3 cut(s) 26, 404, 606
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 2 cut(s) 31, 126
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 4 cut(s) 59, 63, 118, 635
BseNI ACTGG 3 cut(s) 211, 484, 506
BseXI GCAGC 1 cut(s) 727
BsgI GTGCAG 1 cut(s) 734
BshFI GGCC 3 cut(s) 236, 263, 299
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 326, 719
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 2 cut(s) 31, 126
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 772
BsnI GGCC 3 cut(s) 236, 263, 299
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 4 cut(s) 74, 309, 433, 900
Bsp1720I GCTNAGC 2 cut(s) 68, 644
BspACI CCGC 2 cut(s) 175, 517
BspANI GGCC 3 cut(s) 236, 263, 299
BspCNI CTCAG 4 cut(s) 60, 62, 117, 636
BspEI TCCGGA 1 cut(s) 325
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 1 cut(s) 428
BspTI CTTAAG 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 3 cut(s) 211, 484, 506
BssMI GATC 4 cut(s) 74, 309, 433, 900
BssNAI GTATAC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 569
Bst1107I GTATAC 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 569
Bst2UI CCWGG 3 cut(s) 26, 404, 606
Bst4CI ACNGT 2 cut(s) 577, 747
Bst6I CTCTTC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 4 cut(s) 49, 68, 104, 644
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 4 cut(s) 77, 312, 436, 903
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 4 cut(s) 74, 309, 433, 900
BstMWI GCNNNNNNNGC 2 cut(s) 502, 640
BstNI CCWGG 3 cut(s) 26, 404, 606
BstSCI CCNGG 3 cut(s) 24, 402, 604
BstSFI CTRYAG 1 cut(s) 904
BstV1I GCAGC 1 cut(s) 727
BstZ17I GTATAC 1 cut(s) 8
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 236, 263, 299
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 743
Cac8I GCNNGC 1 cut(s) 636
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 763
CsiI ACCWGGT 1 cut(s) 24
Csp6I GTAC 1 cut(s) 44
CviAII CATG 3 cut(s) 375, 431, 617
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 4 cut(s) 49, 68, 104, 644
DpnI GATC 4 cut(s) 76, 311, 435, 902
DpnII GATC 4 cut(s) 74, 309, 433, 900
DraI TTTAAA 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 3 cut(s) 24, 402, 604
EcoT22I ATGCAT 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 3 cut(s) 378, 434, 620
FaqI GGGAC 1 cut(s) 772
FatI CATG 3 cut(s) 374, 430, 616
FauI CCCGC 1 cut(s) 510
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 716
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 716
FspBI CTAG 2 cut(s) 635, 833
GlaI GCGC 1 cut(s) 762
GluI GCNGC 1 cut(s) 716
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 3 cut(s) 236, 263, 299
HapII CCGG 2 cut(s) 326, 719
HhaI GCGC 1 cut(s) 763
Hin1II CATG 3 cut(s) 378, 434, 620
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 326, 719
HphI GGTGA 3 cut(s) 494, 723, 836
Hpy166II GTNNAC 2 cut(s) 8, 409
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 3 cut(s) 326, 437, 617
Hpy8I GTNNAC 2 cut(s) 8, 409
HpyAV CCTTC 3 cut(s) 223, 253, 507
HpyCH4III ACNGT 2 cut(s) 577, 747
HpyCH4V TGCA 5 cut(s) 62, 550, 556, 591, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 640
HpyF3I CTNAG 4 cut(s) 49, 68, 104, 644
Hsp92II CATG 3 cut(s) 378, 434, 620
HspAI GCGC 1 cut(s) 761
Kpn2I TCCGGA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 74, 309, 433, 900
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 3 cut(s) 44, 559, 859
MabI ACCWGGT 1 cut(s) 24
MaeI CTAG 2 cut(s) 635, 833
MaeIII GTNAC 1 cut(s) 729
MalI GATC 4 cut(s) 76, 311, 435, 902
MboI GATC 4 cut(s) 74, 309, 433, 900
MboII GAAGA 7 cut(s) 92, 238, 319, 464, 467, 574, 715
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 9 cut(s) 109, 183, 275, 313, 381, 398, 441, 687, 818
MluNI TGGCCA 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 5 cut(s) 427, 524, 800, 829, 871
Mox20I TGGCCA 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 552
MroI TCCGGA 1 cut(s) 325
MscI TGGCCA 1 cut(s) 236
MseI TTAA 6 cut(s) 246, 380, 446, 471, 542, 864
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 326, 719
MspR9I CCNGG 3 cut(s) 26, 404, 606
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 3 cut(s) 26, 404, 606
MwoI GCNNNNNNNGC 2 cut(s) 502, 640
NdeII GATC 4 cut(s) 74, 309, 433, 900
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 3 cut(s) 378, 434, 620
NlaIV GGNNCC 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 1 cut(s) 729
NsiI ATGCAT 1 cut(s) 552
PagI TCATGA 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 2 cut(s) 31, 126
PkrI GCNGC 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 3 cut(s) 24, 402, 604
PspGI CCWGG 3 cut(s) 24, 402, 604
PspN4I GGNNCC 1 cut(s) 211
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 621
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 6 cut(s) 246, 380, 446, 471, 542, 864
SatI GCNGC 1 cut(s) 716
Sau3AI GATC 4 cut(s) 74, 309, 433, 900
ScrFI CCNGG 3 cut(s) 26, 404, 606
SduI GDGCHC 1 cut(s) 153
SexAI ACCWGGT 1 cut(s) 24
SfaNI GCATC 3 cut(s) 44, 559, 859
SfcI CTRYAG 1 cut(s) 904
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 9 cut(s) 109, 183, 275, 313, 381, 398, 441, 687, 818
SsiI CCGC 2 cut(s) 175, 517
SspMI CTAG 2 cut(s) 635, 833
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 24, 402, 604
TaaI ACNGT 2 cut(s) 577, 747
TaqI TCGA 2 cut(s) 765, 792
TasI AATT 9 cut(s) 109, 183, 275, 313, 381, 398, 441, 687, 818
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 6 cut(s) 246, 380, 446, 471, 542, 864
Tru9I TTAA 6 cut(s) 246, 380, 446, 471, 542, 864
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 1 cut(s) 729
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 729
TspDTI ATGAA 4 cut(s) 216, 288, 605, 633
TspRI CASTG 1 cut(s) 750
Van91I CCANNNNNTGG 2 cut(s) 31, 126
Vha464I CTTAAG 1 cut(s) 470
XapI RAATTY 3 cut(s) 109, 398, 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 7
XspI CTAG 2 cut(s) 635, 833
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.