Rh3AG299200

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006327
Physical Location & Seq
Forward (+)
36634040 .. 36643552
9513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG299200.1

Sequence Viewer

Length: 1596 bp
ATGGGCATCGCAGGAGGAACAAGGAATTCGTTGCTCCACTTCTGTTGTTTGGCCAAAAATGTGTTAGGCCTCTCTCTGCCAACCATAGGCTCTCTTCCTTGTCACATGTGTATACAAAGGCAAAGCTACCGGGTTATGGCATCTTTCATACTCCCAGTAGATTCTGCATTGCTGGGCCGATCAAATATGTATCAGTATCAAACTCTTCTCAGAAATTTGCCACCCACCAGATGCATGAGTAGGACTTCGTTTGAGCTCAACACAGACAATGGTGTTGTGCGGTTTTCAATTGGTAAGCCACTTGATGAAACTAGTTCCTTGACACAAGGGAAGAAGGTGGCCAAACAAGTTAAAATGTCCAAGAAGGCCAAACTGAATGAACTACGATTTTATCGTCTAAAGGCCAAAAAGAAGATCAATTCTCCAAATCCGGAAGTTAGGATTAGATACAAACTTGAAAAGGCAAAACGAAAGGAAGCATGGTTGATTGAGAAGTTGAGAAAATTCCAGGTTCACAAAGCTTCTGCTGAAACACATGATCCTGAAATTTTAACTGAAGAAGAAAAGCATTATCTTAAGCGAACTGGTGAGAAAAAGAAGAACTATGTGCCAGTTGGAAGGCGGGGAGTATTTGGAGGGGTTGTTTTGAATATGCATCTGCATTGGAAGAAGCATGAGACAGTAAAGATTATATGCAAACCTTGTAAGCCAGGACAGGTTCATGAATATGCTGATGAGCTAGCTCGGCTGAGCAAAGGCATAGTGATTGACATCAAATCTAATAATAGTATAATTTTCTATCGGGGGAAGAACTATGTGCAGCCGGAAGTAATGTCACCACCAGATACACTGTCCAAAAATAAGGCGCTCGAAAAATATAGGTATGAGCAGTCCCTTGAACATACAAATGATTGCCCTGGGAAACAATCAACGGAAGATCCTTTGATAAACCATAAATTATTGATCCGGATTGCATGCCATTTGTATGGCTGCTGTTTTCTTGGCTTTATGATTGTGGTGAAGAGGGTCAGTTTATCAAGTGGTAAGAAGCCGCAGGGAGAGCCAGAGAACGTTGGGTCGTCGGAAGCTACGGGGCAGCAGACAGCCCAGTTCTTGGTTTTTCACCGGCGTACTGCATTTGTCACCGAGCCTCTGAAGAACTTTGAATTGAGAAATTGTGAAAATGAAAGAATTGAGCATGTTGAGAGAGAGGAAACCGGAGAAAGACAGAAAGAAGGGAGGGAAGAAGAAATGGAGGTCCAAACAGATGACCAGCTGCCAGCACAGCAGCCTGTTGAAAAATGTAGCATTAGGCAGGTATCGAGAGTGGAAGAAACAGGAGGACAGCGAGAAATAATTAGAGAAGAAGAGGAGGTGCAAGCTATCGACGAGCAGCCTTCACCACCGCCTGCTGAACAATGTAGCATTGGGCATGCATGGAGTGAGGAAGAAGTTGGAGCACTCAACAAAGGATTGGGTAGTGAGGTTGACGTCCAAATCATTGAGGTGAAGCAATCACAATCCTCAGTTGCTGCAGGCGTGAGTATCTGTTCTAACTTGTGTATTTCTTTATCATTTTACATGTTGTCCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

531

Amino Acids

60.17

Weight (kDa)

8.9

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 184 - 268 1.7e-18 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1494
Acc36I ACCTGC 1 cut(s) 1306
AccB7I CCANNNNNTGG 1 cut(s) 1114
AccI GTMKAC 1 cut(s) 112
AccIII TCCGGA 2 cut(s) 430, 966
AciI CCGC 4 cut(s) 280, 622, 1052, 1406
AclI AACGTT 1 cut(s) 1071
AclWI GGATC 3 cut(s) 533, 932, 958
AcoI YGGCCR 2 cut(s) 51, 339
AcsI RAATTY 4 cut(s) 25, 214, 503, 546
AcuI CTGAAG 2 cut(s) 576, 1175
AcyI GRCGYC 1 cut(s) 1491
AfaI GTAC 1 cut(s) 1132
AfiI CCNNNNNNNGG 3 cut(s) 86, 136, 1114
AflII CTTAAG 1 cut(s) 575
AflIII ACRYGT 2 cut(s) 105, 1581
AgsI TTSAA 6 cut(s) 288, 458, 649, 899, 1166, 1298
AhlI ACTAGT 1 cut(s) 311
AjnI CCWGG 3 cut(s) 507, 709, 916
AluBI AGCT 8 cut(s) 126, 256, 521, 739, 743, 1088, 1276, 1382
AluI AGCT 8 cut(s) 126, 256, 521, 739, 743, 1088, 1276, 1382
Alw21I GWGCWC 2 cut(s) 258, 1462
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 3 cut(s) 533, 932, 958
AlwNI CAGNNNCTG 1 cut(s) 1532
Aor13HI TCCGGA 2 cut(s) 430, 966
AoxI GGCC 6 cut(s) 51, 67, 175, 339, 366, 402
ApeKI GCWGC 7 cut(s) 820, 990, 1096, 1276, 1288, 1393, 1532
ApoI RAATTY 4 cut(s) 25, 214, 503, 546
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 175, 1258
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 7 cut(s) 599, 828, 1030, 1115, 1135, 1392, 1519
AsuNHI GCTAGC 1 cut(s) 739
AvaII GGWCC 1 cut(s) 1258
BalI TGGCCA 2 cut(s) 53, 341
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 258, 1462
BbvI GCAGC 7 cut(s) 832, 977, 1108, 1263, 1300, 1405, 1519
BciT130I CCWGG 3 cut(s) 509, 711, 918
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 671
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 2 cut(s) 312, 740
BfmI CTRYAG 1 cut(s) 1533
BfoI RGCGCY 1 cut(s) 869
BfrI CTTAAG 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 1306
BisI GCNGC 8 cut(s) 821, 991, 1052, 1097, 1277, 1289, 1394, 1533
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 8 cut(s) 822, 992, 1053, 1098, 1278, 1290, 1395, 1534
Bme1390I CCNGG 4 cut(s) 131, 509, 711, 918
Bme18I GGWCC 1 cut(s) 1258
BmgT120I GGNCC 2 cut(s) 175, 1258
BmrFI CCNGG 4 cut(s) 131, 509, 711, 918
BmrI ACTGGG 2 cut(s) 149, 1102
BmsI GCATC 4 cut(s) 15, 149, 221, 664
BmtI GCTAGC 1 cut(s) 743
BmuI ACTGGG 2 cut(s) 149, 1102
Bpu1102I GCTNAGC 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 770
BsaHI GRCGYC 1 cut(s) 1491
BsaJI CCNNGG 2 cut(s) 916, 917
BsaWI WCCGGW 3 cut(s) 430, 966, 1217
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 136, 1114
Bse118I RCCGGY 1 cut(s) 1125
Bse1I ACTGG 4 cut(s) 155, 589, 611, 1108
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 770
BseAI TCCGGA 2 cut(s) 430, 966
BseBI CCWGG 3 cut(s) 509, 711, 918
BseDI CCNNGG 2 cut(s) 916, 917
BseJI GATNNNNATC 1 cut(s) 770
BseLI CCNNNNNNNGG 3 cut(s) 86, 136, 1114
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 3 cut(s) 223, 740, 1539
BseNI ACTGG 4 cut(s) 155, 589, 611, 1108
BseRI GAGGAG 1 cut(s) 1385
BseXI GCAGC 7 cut(s) 832, 977, 1108, 1263, 1300, 1405, 1519
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 839
BshFI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
BsiHKAI GWGCWC 2 cut(s) 258, 1462
BsiSI CCGG 6 cut(s) 130, 431, 824, 967, 1126, 1218
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 3 cut(s) 86, 136, 1114
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 877
BsnI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
Bsp1286I GDGCHC 2 cut(s) 258, 1462
Bsp13I TCCGGA 2 cut(s) 430, 966
Bsp143I GATC 5 cut(s) 179, 414, 538, 937, 963
Bsp1720I GCTNAGC 1 cut(s) 749
BspACI CCGC 4 cut(s) 280, 622, 1052, 1406
BspANI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
BspCNI CTCAG 3 cut(s) 222, 741, 1538
BspEI TCCGGA 2 cut(s) 430, 966
BspHI TCATGA 1 cut(s) 721
BspMAI CTGCAG 1 cut(s) 1537
BspMI ACCTGC 1 cut(s) 1306
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 3 cut(s) 533, 932, 958
BspTI CTTAAG 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 1125
BsrI ACTGG 4 cut(s) 155, 589, 611, 1108
BssAI RCCGGY 1 cut(s) 1125
BssECI CCNNGG 2 cut(s) 916, 917
BssMI GATC 5 cut(s) 179, 414, 538, 937, 963
BssNAI GTATAC 1 cut(s) 113
BssNI GRCGYC 1 cut(s) 1491
Bst1107I GTATAC 1 cut(s) 113
Bst2UI CCWGG 3 cut(s) 509, 711, 918
Bst4CI ACNGT 2 cut(s) 682, 852
Bst6I CTCTTC 4 cut(s) 99, 210, 1016, 1362
BstACI GRCGYC 1 cut(s) 1491
BstAFI CTTAAG 1 cut(s) 575
BstC8I GCNNGC 7 cut(s) 741, 976, 1281, 1380, 1410, 1434, 1537
BstDEI CTNAG 3 cut(s) 209, 749, 1525
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 5 cut(s) 182, 417, 541, 940, 966
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 5 cut(s) 179, 414, 538, 937, 963
BstMWI GCNNNNNNNGC 3 cut(s) 745, 1060, 1285
BstNI CCWGG 3 cut(s) 509, 711, 918
BstNSI RCATGY 5 cut(s) 109, 978, 1202, 1436, 1585
BstSCI CCNGG 4 cut(s) 129, 507, 709, 916
BstSFI CTRYAG 1 cut(s) 1533
BstV1I GCAGC 7 cut(s) 832, 977, 1108, 1263, 1300, 1405, 1519
BstX2I RGATCY 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 986
BstYI RGATCY 1 cut(s) 937
BstZ17I GTATAC 1 cut(s) 113
BsuRI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
BtsIMutI CAGTG 1 cut(s) 848
BveI ACCTGC 1 cut(s) 1306
Cac8I GCNNGC 7 cut(s) 741, 976, 1281, 1380, 1410, 1434, 1537
CaiI CAGNNNCTG 1 cut(s) 1532
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 868
Cfr10I RCCGGY 1 cut(s) 1125
Cfr13I GGNCC 2 cut(s) 175, 1258
Csp6I GTAC 1 cut(s) 1131
CspCI CAANNNNNGTGG 2 cut(s) 26, 61
CviQI GTAC 1 cut(s) 1131
DdeI CTNAG 3 cut(s) 209, 749, 1525
DpnI GATC 5 cut(s) 181, 416, 540, 939, 965
DpnII GATC 5 cut(s) 179, 414, 538, 937, 963
EaeI YGGCCR 2 cut(s) 51, 339
Eam1104I CTCTTC 4 cut(s) 99, 210, 1016, 1362
EarI CTCTTC 4 cut(s) 99, 210, 1016, 1362
Ecl136II GAGCTC 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 1258
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 576, 1175
EcoICRI GAGCTC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 507, 709, 916
EcoT22I ATGCAT 3 cut(s) 236, 657, 1438
EcoT38I GRGCYC 1 cut(s) 258
FaqI GGGAC 1 cut(s) 877
FauI CCCGC 1 cut(s) 615
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 8 cut(s) 821, 991, 1052, 1097, 1277, 1289, 1394, 1533
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 8 cut(s) 821, 991, 1052, 1097, 1277, 1289, 1394, 1533
FspBI CTAG 2 cut(s) 312, 740
GlaI GCGC 1 cut(s) 867
GluI GCNGC 8 cut(s) 821, 991, 1052, 1097, 1277, 1289, 1394, 1533
GsaI CCCAGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 869
HaeIII GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
HapII CCGG 6 cut(s) 130, 431, 824, 967, 1126, 1218
HhaI GCGC 1 cut(s) 868
Hin1I GRCGYC 1 cut(s) 1491
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HincII GTYRAC 1 cut(s) 1489
HindII GTYRAC 1 cut(s) 1489
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 1 cut(s) 161
HpaII CCGG 6 cut(s) 130, 431, 824, 967, 1126, 1218
HphI GGTGA 7 cut(s) 599, 828, 1030, 1115, 1135, 1392, 1519
Hpy166II GTNNAC 3 cut(s) 113, 514, 1489
Hpy188I TCNGA 3 cut(s) 212, 1084, 1155
Hpy188III TCNNGA 5 cut(s) 431, 542, 722, 967, 1323
Hpy8I GTNNAC 3 cut(s) 113, 514, 1489
Hpy99I CGWCG 2 cut(s) 1084, 1391
HpyAV CCTTC 5 cut(s) 328, 358, 612, 1229, 1407
HpyCH4III ACNGT 2 cut(s) 682, 852
HpyCH4IV ACGT 2 cut(s) 1071, 1491
HpyF10VI GCNNNNNNNGC 3 cut(s) 745, 1060, 1285
HpyF3I CTNAG 3 cut(s) 209, 749, 1525
HpySE526I ACGT 2 cut(s) 1071, 1491
Hsp92I GRCGYC 1 cut(s) 1491
HspAI GCGC 1 cut(s) 866
Kpn2I TCCGGA 2 cut(s) 430, 966
Kzo9I GATC 5 cut(s) 179, 414, 538, 937, 963
LmnI GCTCC 2 cut(s) 39, 1457
Lsp1109I GCAGC 7 cut(s) 832, 977, 1108, 1263, 1300, 1405, 1519
LweI GCATC 4 cut(s) 15, 149, 221, 664
MaeI CTAG 2 cut(s) 312, 740
MaeII ACGT 2 cut(s) 1071, 1491
MaeIII GTNAC 3 cut(s) 101, 834, 1141
MalI GATC 5 cut(s) 181, 416, 540, 939, 965
MboI GATC 5 cut(s) 179, 414, 538, 937, 963
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 2 cut(s) 258, 1462
MlsI TGGCCA 2 cut(s) 53, 341
MluNI TGGCCA 2 cut(s) 53, 341
MmeI TCCRAC 3 cut(s) 595, 1062, 1435
Mox20I TGGCCA 2 cut(s) 53, 341
Mph1103I ATGCAT 3 cut(s) 236, 657, 1438
MroI TCCGGA 2 cut(s) 430, 966
MscI TGGCCA 2 cut(s) 53, 341
MseI TTAA 3 cut(s) 351, 551, 576
MslI CAYNNNNRTG 4 cut(s) 726, 906, 984, 1505
Msp20I TGGCCA 2 cut(s) 53, 341
MspA1I CMGCKG 1 cut(s) 1276
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 6 cut(s) 130, 431, 824, 967, 1126, 1218
MspR9I CCNGG 4 cut(s) 131, 509, 711, 918
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 3 cut(s) 509, 711, 918
MwoI GCNNNNNNNGC 3 cut(s) 745, 1060, 1285
NciI CCSGG 1 cut(s) 131
NdeII GATC 5 cut(s) 179, 414, 538, 937, 963
NheI GCTAGC 1 cut(s) 739
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 3 cut(s) 101, 834, 1141
NsiI ATGCAT 3 cut(s) 236, 657, 1438
NspI RCATGY 5 cut(s) 109, 978, 1202, 1436, 1585
PaeI GCATGC 2 cut(s) 978, 1436
PagI TCATGA 1 cut(s) 721
PasI CCCWGGG 1 cut(s) 917
PceI AGGCCT 1 cut(s) 69
PciI ACATGT 2 cut(s) 105, 1581
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 1114
PkrI GCNGC 8 cut(s) 822, 992, 1053, 1098, 1278, 1290, 1395, 1534
PscI ACATGT 2 cut(s) 105, 1581
Psp124BI GAGCTC 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 1071
Psp6I CCWGG 3 cut(s) 507, 709, 916
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 3 cut(s) 507, 709, 916
PspPI GGNCC 2 cut(s) 175, 1258
PstI CTGCAG 1 cut(s) 1537
PstNI CAGNNNCTG 1 cut(s) 1532
PsuI RGATCY 1 cut(s) 937
PvuII CAGCTG 1 cut(s) 1276
RsaI GTAC 1 cut(s) 1132
RsaNI GTAC 1 cut(s) 1131
RseI CAYNNNNRTG 4 cut(s) 726, 906, 984, 1505
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 3 cut(s) 351, 551, 576
SatI GCNGC 8 cut(s) 821, 991, 1052, 1097, 1277, 1289, 1394, 1533
Sau3AI GATC 5 cut(s) 179, 414, 538, 937, 963
Sau96I GGNCC 2 cut(s) 175, 1258
ScrFI CCNGG 4 cut(s) 131, 509, 711, 918
SduI GDGCHC 2 cut(s) 258, 1462
SfaNI GCATC 4 cut(s) 15, 149, 221, 664
SfcI CTRYAG 1 cut(s) 1533
SgrAI CRCCGGYG 1 cut(s) 1125
SinI GGWCC 1 cut(s) 1258
SmiMI CAYNNNNRTG 4 cut(s) 726, 906, 984, 1505
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 311
SphI GCATGC 2 cut(s) 978, 1436
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 4 cut(s) 280, 622, 1052, 1406
SspMI CTAG 2 cut(s) 312, 740
SstI GAGCTC 1 cut(s) 258
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 4 cut(s) 129, 507, 709, 916
TaaI ACNGT 2 cut(s) 682, 852
TaiI ACGT 2 cut(s) 1074, 1494
TaqI TCGA 3 cut(s) 870, 1322, 1386
TauI GCSGC 1 cut(s) 1054
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 351, 551, 576
Tru9I TTAA 3 cut(s) 351, 551, 576
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 3 cut(s) 101, 834, 1141
TseI GCWGC 7 cut(s) 820, 990, 1096, 1276, 1288, 1393, 1532
Tsp45I GTSAC 3 cut(s) 101, 834, 1141
TspDTI ATGAA 6 cut(s) 136, 321, 393, 710, 738, 1200
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 1114
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 1258
XapI RAATTY 4 cut(s) 25, 214, 503, 546
XceI RCATGY 5 cut(s) 109, 978, 1202, 1436, 1585
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 2 cut(s) 312, 740
ZraI GACGTC 1 cut(s) 1492
Zsp2I ATGCAT 3 cut(s) 236, 657, 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.