Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006327

Physical Location & Seq

Genomic Coordinates Reverse (-)

13137416 .. 13146795

Gene Structure 9380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGACGTCGTCCTCCGCTGCTTCTCTATTGGGTTTGCGTATAAGGACTGCTTCTTCCTCCACCACCAGCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACCGACCGAAAGGACCCCCACAGCAAGGTTTACACCGCCAAAGGCCCCAGGGACCACCGCGTCCGGCTCGCCGCCCACACCGCTATTCAATTCTACGACGTGCAAGACCGGCTCGGATACTACCGGCCCAGCAAGGTCGTCGATTGGGTCATCAAGAAAGCCAAGGCCGCAATCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTCTGTTCAGACAACATCTTCTCCGACGAATGACCCAGTTCCTTCGAGGGACAAATGTGTGGGGAGATCGGTCGAGACTCTACCATGTGTGCCGGATAGAAGGCTTGCAGCTTCATGCTACCAAGTAGGGGAAAGAAGACGGCGGAGGATCCATATCAAGCTCTCCGATGGCAATGCGTTCCCCAATGGTGAAGGCGTGTTTTGTGTGGTTTTCGGTATATATAGCCATCAGCCCAATAGTAGCCCAAAGAAAAAATTATCTACAACCAAGCTTGCTTTGTTTTCTGATTTGCTCCAAACGGGAGATTTGGGACACAGCAGGACAAGAAAGGTTTCAAAGTCTCAGGGCAGCATTTTATGTGGAGCAGATTGTTGTGTTCTTGTTTATGATGTGAATGTTCTAAGATCATTTGAAACACTTCAGAACTGGCATCAAGAGTTTCTCAAACACGTAGGTCCAGCTGACACTGAGGCATTTCCATTTATACTACTTGGCAACAAGATTGATATAGATGGCGGAAACAGCAGAGCAACTCTGGCTGTGGCTGGATTTTCAAGGATGGGCATCACAGGAGGAACAAGGAATTCGTTGCTCCGCTTCTGTTGTTTGGCCAAAAATGTGTTAGGCCTCTCTTTACCAACCGTAGGCTCTCTTCCTTGTCACATGTGTATACAAAGGCAAAGCTACCAGGTTATGGCATCTTTCGGACTCTTAGTAGATTCTGCATTGCTGAGCCGATCAAATATGTATCAGTATCAAACTCTTCTCAGAAATTTGCCACCCACCAGATGCATGAGCAGGACTTCGTTTGAGCTCAACACAGATAATGGTGTTGTGCGGTTTTCAATTGGTAAGCCACTTGATGAAACTGGTTCCTTGACACAAGGGAAGAAGGTGGCCAAACGAGTTAAAATGTCCAAGAAGGCCAAACTGAATGAACTACGATTTTATCGTCTAAAGGCCAAAAAGAAGATCAATTCTCCAAATCCGGAAGTTAGGATTACATACAAACTTGAAAAGGCAAAACGAAAGGAAGCATGGTTGATTGAGAAGTTGAGAAAATTCCAGGTTCACAAAGCTTCTGCTGAAACACATGATCCTGAAATTTTAACTGAAGAAGAAAAGCATTATCTTAAGCGAACTGGTGAGAAAAAGAAGAACTATGTGCCAGTTGGAAGGCGGGGAGTATTTGGAGGGGTTGTTTTAAATATGCATCTGCATTGGAAGAAGCATGAGACAGTAAAGGTTATATGCAAACCTTGTAAGCCAGGACAGGTTCATGAATATGCTGATGAGCTAGCTCGGCTGAGCAAAGGCATAGTGATTGACATCAAACCTAATAATACTATAATTTTCTATCGGGGGAAGAACTATGTGCAGCCGGAAGTAATGTCACCATCAGAAACACTGTCCAAAAATAAGGCGCTCGAAAAATATAGGTATGGGCAGTCCCTCGAACATACAGATGATTGCCCTGGGAAACAATCAACAGAAGATTCTTGGATAAACCATAAATTATTGATCCGGATTGCATGCCATTTGTGTATGACTGCTGTTTTCTTGGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

628

Amino Acids

70.39

Weight (kDa)

9.77

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	37 - 110	5.3e-24	TCP family transcription factor
Ras	PF00071	221 - 275	3.7e-08	Ras family
CRS1_YhbY	PF01985	474 - 558	9.7e-19	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13070
fragaria_vesca	FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180
malus_domestica	MD10G1049100.v1.1
prunus_persica	Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491551
rosa_laevigata	RLG00000022837 RLG00000022839
rosa_multiflora	Rmu_sc0001267.1_g000015
rosa_roxburghii	Rroxscaffold_6G00392910 Rroxscaffold_6G00392940
rosa_rugosa	Rorug03G0250200
rosa_samantha	Rh3AG299200 Rh3BG335000 Rh3BG335600 Rh3CG331800 Rh3DG333500
rosa_wichuraiana	Rw3G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AatII	GACGTC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	982
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	2 cut(s)	1300, 1836
AclWI	GGATC	4 cut(s)	454, 467, 1403, 1828
AcoI	YGGCCR	2 cut(s)	921, 1209
AcsI	RAATTY	4 cut(s)	895, 1084, 1373, 1416
AcuI	CTGAAG	2 cut(s)	716, 1446
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	130, 439, 956, 1006
AflII	CTTAAG	1 cut(s)	1445
AflIII	ACRYGT	2 cut(s)	760, 975
AgsI	TTSAA	6 cut(s)	194, 648, 725, 867, 1158, 1328
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	5 cut(s)	152, 999, 1377, 1579, 1786
Alw21I	GWGCWC	1 cut(s)	1128
Alw26I	GTCTC	3 cut(s)	380, 657, 1541
AlwI	GGATC	4 cut(s)	454, 467, 1403, 1828
Ama87I	CYCGRG	1 cut(s)	84
Aor13HI	TCCGGA	2 cut(s)	1300, 1836
ApeKI	GCWGC	5 cut(s)	17, 286, 419, 660, 1690
ApoI	RAATTY	4 cut(s)	895, 1084, 1373, 1416
Asp700I	GAANNNNTTC	2 cut(s)	643, 729
AspLEI	GCGC	1 cut(s)	1738
AspS9I	GGNCC	6 cut(s)	102, 118, 149, 157, 231, 767
AsuHPI	GGTGA	3 cut(s)	512, 1469, 1698
AsuNHI	GCTAGC	1 cut(s)	1609
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	3 cut(s)	118, 157, 767
BalI	TGGCCA	2 cut(s)	923, 1211
BamHI	GGATCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	1128
BarI	GAAGNNNNNNTAC	2 cut(s)	948, 980
BbsI	GAAGAC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	1128
BbvI	GCAGC	5 cut(s)	4, 273, 431, 672, 1702
BccI	CCATC	5 cut(s)	473, 546, 818, 865, 1717
BceAI	ACGGC	2 cut(s)	277, 467
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 467, 501
BciT130I	CCWGG	5 cut(s)	154, 1001, 1379, 1581, 1788
BciVI	GTATCC	1 cut(s)	215
BcoDI	GTCTC	3 cut(s)	380, 657, 1541
BfaI	CTAG	1 cut(s)	1610
BfoI	RGCGCY	1 cut(s)	1739
BfrI	CTTAAG	1 cut(s)	1445
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	8 cut(s)	18, 177, 273, 287, 290, 420, 661, 1691
BlpI	GCTNAGC	2 cut(s)	1043, 1619
BlsI	GCNGC	8 cut(s)	19, 178, 274, 288, 291, 421, 662, 1692
Bme1390I	CCNGG	5 cut(s)	154, 1001, 1379, 1581, 1788
Bme18I	GGWCC	3 cut(s)	118, 157, 767
BmeT110I	CYCGRG	1 cut(s)	84
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	6 cut(s)	102, 118, 149, 157, 231, 767
BmiI	GGNNCC	6 cut(s)	120, 151, 158, 299, 461, 1186
BmrFI	CCNGG	5 cut(s)	154, 1001, 1379, 1581, 1788
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	5 cut(s)	751, 885, 1019, 1091, 1534
BmtI	GCTAGC	1 cut(s)	1613
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	454
Bpu1102I	GCTNAGC	2 cut(s)	1043, 1619
BsaAI	YACGTR	1 cut(s)	763
BsaBI	GATNNNNATC	3 cut(s)	464, 875, 1640
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	6 cut(s)	152, 153, 267, 293, 1786, 1787
BsaWI	WCCGGW	2 cut(s)	1300, 1836
BsaXI	ACNNNNNCTCC	4 cut(s)	316, 346, 1497, 1527
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 439, 956, 1006
Bse118I	RCCGGY	2 cut(s)	213, 228
Bse1I	ACTGG	5 cut(s)	347, 743, 1186, 1459, 1481
Bse3DI	GCAATG	2 cut(s)	490, 1037
Bse8I	GATNNNNATC	3 cut(s)	464, 875, 1640
BseAI	TCCGGA	2 cut(s)	1300, 1836
BseBI	CCWGG	5 cut(s)	154, 1001, 1379, 1581, 1788
BseDI	CCNNGG	6 cut(s)	152, 153, 267, 293, 1786, 1787
BseGI	GGATG	1 cut(s)	876
BseJI	GATNNNNATC	3 cut(s)	464, 875, 1640
BseLI	CCNNNNNNNGG	4 cut(s)	130, 439, 956, 1006
BseMI	GCAATG	2 cut(s)	490, 1037
BseMII	CTCAG	5 cut(s)	668, 771, 1034, 1093, 1610
BseNI	ACTGG	5 cut(s)	347, 743, 1186, 1459, 1481
BseXI	GCAGC	5 cut(s)	4, 273, 431, 672, 1702
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	1709
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	2 cut(s)	112, 384
BsiEI	CGRYCG	2 cut(s)	112, 384
BsiHKAI	GWGCWC	1 cut(s)	1128
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	7 cut(s)	169, 214, 229, 404, 1301, 1694, 1837
BslFI	GGGAC	4 cut(s)	170, 374, 636, 1747
BslI	CCNNNNNNNGG	4 cut(s)	130, 439, 956, 1006
BsmAI	GTCTC	3 cut(s)	380, 657, 1541
BsmFI	GGGAC	4 cut(s)	170, 374, 636, 1747
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	1128
Bsp13I	TCCGGA	2 cut(s)	1300, 1836
Bsp143I	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
Bsp1720I	GCTNAGC	2 cut(s)	1043, 1619
BspCNI	CTCAG	5 cut(s)	667, 772, 1035, 1092, 1611
BspEI	TCCGGA	2 cut(s)	1300, 1836
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	1591
BspLI	GGNNCC	6 cut(s)	120, 151, 158, 299, 461, 1186
BspOI	GCTAGC	1 cut(s)	1613
BspPI	GGATC	4 cut(s)	454, 467, 1403, 1828
BspTI	CTTAAG	1 cut(s)	1445
BsrDI	GCAATG	2 cut(s)	490, 1037
BsrFI	RCCGGY	2 cut(s)	213, 228
BsrI	ACTGG	5 cut(s)	347, 743, 1186, 1459, 1481
BssAI	RCCGGY	2 cut(s)	213, 228
BssECI	CCNNGG	6 cut(s)	152, 153, 267, 293, 1786, 1787
BssMI	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
BssNAI	GTATAC	1 cut(s)	983
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	267
Bst1107I	GTATAC	1 cut(s)	983
Bst2UI	CCWGG	5 cut(s)	154, 1001, 1379, 1581, 1788
Bst4CI	ACNGT	3 cut(s)	955, 1552, 1722
Bst6I	CTCTTC	2 cut(s)	969, 1080
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	1445
BstBAI	YACGTR	1 cut(s)	763
BstC8I	GCNNGC	5 cut(s)	174, 417, 585, 1611, 1846
BstDEI	CTNAG	8 cut(s)	98, 654, 713, 780, 1024, 1043, 1079, 1619
BstDSI	CCRYGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	876
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	1739
BstHHI	GCGC	1 cut(s)	1738
BstKTI	GATC	7 cut(s)	380, 462, 719, 1052, 1287, 1411, 1836
BstMAI	GTCTC	3 cut(s)	380, 657, 1541
BstMBI	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
BstMCI	CGRYCG	2 cut(s)	112, 384
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 214, 272, 834, 848, 1615
BstNI	CCWGG	5 cut(s)	154, 1001, 1379, 1581, 1788
BstNSI	RCATGY	2 cut(s)	979, 1848
BstSCI	CCNGG	5 cut(s)	152, 999, 1377, 1579, 1786
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	5 cut(s)	4, 273, 431, 672, 1702
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BstZ17I	GTATAC	1 cut(s)	983
BsuI	GTATCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	293
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	777, 1718
Cac8I	GCNNGC	5 cut(s)	174, 417, 585, 1611, 1846
CciI	TCATGA	1 cut(s)	1591
CfoI	GCGC	1 cut(s)	1738
Cfr10I	RCCGGY	2 cut(s)	213, 228
Cfr13I	GGNCC	6 cut(s)	102, 118, 149, 157, 231, 767
CseI	GACGC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	999
CviAII	CATG	9 cut(s)	396, 426, 976, 1105, 1350, 1406, 1544, 1592, 1845
DdeI	CTNAG	8 cut(s)	98, 654, 713, 780, 1024, 1043, 1079, 1619
DpnI	GATC	7 cut(s)	379, 461, 718, 1051, 1286, 1410, 1835
DpnII	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
DraI	TTTAAA	1 cut(s)	1518
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	921, 1209
Eam1104I	CTCTTC	2 cut(s)	969, 1080
EarI	CTCTTC	2 cut(s)	969, 1080
EciI	GGCGGA	2 cut(s)	469, 843
Ecl136II	GAGCTC	1 cut(s)	1126
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	939
Eco24I	GRGCYC	1 cut(s)	1128
Eco47I	GGWCC	3 cut(s)	118, 157, 767
Eco53kI	GAGCTC	1 cut(s)	1126
Eco57I	CTGAAG	2 cut(s)	716, 1446
Eco88I	CYCGRG	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	1126
EcoO109I	RGGNCCY	2 cut(s)	118, 149
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	5 cut(s)	152, 999, 1377, 1579, 1786
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	2 cut(s)	1106, 1527
EcoT38I	GRGCYC	1 cut(s)	1128
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	9 cut(s)	399, 429, 979, 1108, 1353, 1409, 1547, 1595, 1848
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	4 cut(s)	170, 374, 636, 1747
FatI	CATG	9 cut(s)	395, 425, 975, 1104, 1349, 1405, 1543, 1591, 1844
FauI	CCCGC	1 cut(s)	1485
FblI	GTMKAC	1 cut(s)	982
Fnu4HI	GCNGC	8 cut(s)	18, 177, 273, 287, 290, 420, 661, 1691
FokI	GGATG	1 cut(s)	883
FriOI	GRGCYC	1 cut(s)	1128
Fsp4HI	GCNGC	8 cut(s)	18, 177, 273, 287, 290, 420, 661, 1691
FspBI	CTAG	1 cut(s)	1610
GlaI	GCGC	1 cut(s)	1737
GluI	GCNGC	8 cut(s)	18, 177, 273, 287, 290, 420, 661, 1691
GsaI	CCCAGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	1739
HapII	CCGG	7 cut(s)	169, 214, 229, 404, 1301, 1694, 1837
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	1738
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	9 cut(s)	399, 429, 979, 1108, 1353, 1409, 1547, 1595, 1848
Hin6I	GCGC	1 cut(s)	1736
HinP1I	GCGC	1 cut(s)	1736
HindIII	AAGCTT	2 cut(s)	581, 1389
HinfI	GANTC	4 cut(s)	388, 1020, 1031, 1808
HpaII	CCGG	7 cut(s)	169, 214, 229, 404, 1301, 1694, 1837
HphI	GGTGA	3 cut(s)	512, 1469, 1698
Hpy166II	GTNNAC	3 cut(s)	136, 983, 1384
Hpy188I	TCNGA	9 cut(s)	221, 321, 336, 478, 598, 735, 1019, 1082, 1714
Hpy188III	TCNNGA	7 cut(s)	259, 385, 746, 1301, 1412, 1592, 1837
Hpy8I	GTNNAC	3 cut(s)	136, 983, 1384
Hpy99I	CGWCG	5 cut(s)	10, 206, 248, 284, 340
HpyAV	CCTTC	6 cut(s)	363, 405, 497, 1198, 1228, 1482
HpyCH4III	ACNGT	3 cut(s)	955, 1552, 1722
HpyCH4IV	ACGT	3 cut(s)	5, 204, 762
HpyCH4V	TGCA	9 cut(s)	208, 419, 1037, 1104, 1525, 1531, 1566, 1690, 1844
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 214, 272, 834, 848, 1615
HpyF3I	CTNAG	8 cut(s)	98, 654, 713, 780, 1024, 1043, 1079, 1619
HpySE526I	ACGT	3 cut(s)	5, 204, 762
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	9 cut(s)	399, 429, 979, 1108, 1353, 1409, 1547, 1595, 1848
HspAI	GCGC	1 cut(s)	1736
Kpn2I	TCCGGA	2 cut(s)	1300, 1836
Kzo9I	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
LmnI	GCTCC	3 cut(s)	609, 674, 909
Lsp1109I	GCAGC	5 cut(s)	4, 273, 431, 672, 1702
LweI	GCATC	5 cut(s)	751, 885, 1019, 1091, 1534
MabI	ACCWGGT	1 cut(s)	999
MaeI	CTAG	1 cut(s)	1610
MaeII	ACGT	3 cut(s)	5, 204, 762
MaeIII	GTNAC	2 cut(s)	971, 1704
MalI	GATC	7 cut(s)	379, 461, 718, 1051, 1286, 1410, 1835
MboI	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
MfeI	CAATTG	1 cut(s)	1158
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	1128
MlsI	TGGCCA	2 cut(s)	923, 1211
MluNI	TGGCCA	2 cut(s)	923, 1211
MlyI	GAGTC	2 cut(s)	382, 1014
MmeI	TCCRAC	2 cut(s)	359, 1465
Mox20I	TGGCCA	2 cut(s)	923, 1211
Mph1103I	ATGCAT	2 cut(s)	1106, 1527
MroI	TCCGGA	2 cut(s)	1300, 1836
MroXI	GAANNNNTTC	2 cut(s)	643, 729
MscI	TGGCCA	2 cut(s)	923, 1211
MseI	TTAA	4 cut(s)	1221, 1421, 1446, 1517
MslI	CAYNNNNRTG	2 cut(s)	1596, 1776
Msp20I	TGGCCA	2 cut(s)	923, 1211
MspA1I	CMGCKG	2 cut(s)	17, 773
MspCI	CTTAAG	1 cut(s)	1445
MspI	CCGG	7 cut(s)	169, 214, 229, 404, 1301, 1694, 1837
MspR9I	CCNGG	5 cut(s)	154, 1001, 1379, 1581, 1788
MunI	CAATTG	1 cut(s)	1158
MvaI	CCWGG	5 cut(s)	154, 1001, 1379, 1581, 1788
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	6 cut(s)	185, 214, 272, 834, 848, 1615
NdeII	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
NheI	GCTAGC	1 cut(s)	1609
NlaIII	CATG	9 cut(s)	399, 429, 979, 1108, 1353, 1409, 1547, 1595, 1848
NlaIV	GGNNCC	6 cut(s)	120, 151, 158, 299, 461, 1186
NmeAIII	GCCGAG	1 cut(s)	1594
NmuCI	GTSAC	2 cut(s)	971, 1704
NsiI	ATGCAT	2 cut(s)	1106, 1527
NspI	RCATGY	2 cut(s)	979, 1848
PaeI	GCATGC	1 cut(s)	1848
PaeR7I	CTCGAG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	1591
PasI	CCCWGGG	2 cut(s)	153, 1787
PceI	AGGCCT	1 cut(s)	939
PciI	ACATGT	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	1 cut(s)	1261
PdmI	GAANNNNTTC	2 cut(s)	643, 729
PfeI	GAWTC	2 cut(s)	1031, 1808
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	1006
PkrI	GCNGC	8 cut(s)	19, 178, 274, 288, 291, 421, 662, 1692
PleI	GAGTC	2 cut(s)	382, 1014
PpsI	GAGTC	2 cut(s)	382, 1014
Ppu21I	YACGTR	1 cut(s)	763
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	975
Psp124BI	GAGCTC	1 cut(s)	1128
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	5 cut(s)	152, 999, 1377, 1579, 1786
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	5 cut(s)	152, 999, 1377, 1579, 1786
PspN4I	GGNNCC	6 cut(s)	120, 151, 158, 299, 461, 1186
PspPI	GGNCC	6 cut(s)	102, 118, 149, 157, 231, 767
PspPPI	RGGWCCY	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	773
RseI	CAYNNNNRTG	2 cut(s)	1596, 1776
SacI	GAGCTC	1 cut(s)	1128
SaqAI	TTAA	4 cut(s)	1221, 1421, 1446, 1517
SatI	GCNGC	8 cut(s)	18, 177, 273, 287, 290, 420, 661, 1691
Sau3AI	GATC	7 cut(s)	377, 459, 716, 1049, 1284, 1408, 1833
Sau96I	GGNCC	6 cut(s)	102, 118, 149, 157, 231, 767
SchI	GAGTC	2 cut(s)	382, 1014
ScrFI	CCNGG	5 cut(s)	154, 1001, 1379, 1581, 1788
SduI	GDGCHC	1 cut(s)	1128
SexAI	ACCWGGT	1 cut(s)	999
SfaNI	GCATC	5 cut(s)	751, 885, 1019, 1091, 1534
Sfr274I	CTCGAG	1 cut(s)	84
SinI	GGWCC	3 cut(s)	118, 157, 767
SlaI	CTCGAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	1596, 1776
SmlI	CTYRAG	2 cut(s)	84, 1445
SmoI	CTYRAG	2 cut(s)	84, 1445
SphI	GCATGC	1 cut(s)	1848
SseBI	AGGCCT	1 cut(s)	939
SspMI	CTAG	1 cut(s)	1610
SstI	GAGCTC	1 cut(s)	1128
StuI	AGGCCT	1 cut(s)	939
StyD4I	CCNGG	5 cut(s)	152, 999, 1377, 1579, 1786
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	955, 1552, 1722
TaiI	ACGT	3 cut(s)	8, 207, 765
TaqI	TCGA	7 cut(s)	85, 246, 279, 356, 384, 1740, 1767
TaqII	GACCGA	2 cut(s)	126, 370
TauI	GCSGC	3 cut(s)	179, 275, 292
TfiI	GAWTC	2 cut(s)	1031, 1808
Tru1I	TTAA	4 cut(s)	1221, 1421, 1446, 1517
Tru9I	TTAA	4 cut(s)	1221, 1421, 1446, 1517
TscAI	CASTG	2 cut(s)	784, 1725
TseFI	GTSAC	2 cut(s)	971, 1704
TseI	GCWGC	5 cut(s)	17, 286, 419, 660, 1690
Tsp45I	GTSAC	2 cut(s)	971, 1704
TspDTI	ATGAA	5 cut(s)	414, 1191, 1263, 1580, 1608
TspRI	CASTG	2 cut(s)	784, 1725
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	1006
Vha464I	CTTAAG	1 cut(s)	1445
VpaK11BI	GGWCC	3 cut(s)	118, 157, 767
XapI	RAATTY	4 cut(s)	895, 1084, 1373, 1416
XceI	RCATGY	2 cut(s)	979, 1848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	982
XmnI	GAANNNNTTC	2 cut(s)	643, 729
XspI	CTAG	1 cut(s)	1610
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	2 cut(s)	1106, 1527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.