Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006327

Physical Location & Seq

Genomic Coordinates Reverse (-)

13103473 .. 13107942

Gene Structure 4470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCGGCGTTTTCCCTAATGGTGAAGGCGTGTTCTGTGTGGTTTTCGATAACCATTGACCTGGGCTGGGGCTCTTATTTGGGACACAGCAGGACAAGAAAGGTTTCAAAGTCTCAGGGCAGCATTTTATGTGGAGCAGATTGTTGTGTTCTTGTTTATGATGTGAATGTTCTAAGATCATTTGAAACACTTCAGAACTGGCATCAAGAGTTTCTCAAACAGGTAGGTCCAGCTGACACTGAGGCATTTCCATTTATACTACTTGGCAACAAAATTGATATAGATGGCGGAAACAGCAGAGCAACTCTGGCTGTGGCTGGATTTTCAAGGATGGGCATCACAGGAGGAACAAGGAATTCGTTGCTCCGCTTCTGTTGTTTGGCCAAAAATGTGTTAGGCGTCTCTTTGCCAACCATAGACTCTCTTCCTTGTCACATGTGTATACAAAGGCAAAGCTACCGGGTTATGGCATCCTTCGTACTCTCAGTAGATTCTGCTTTGCTGAGCCGATCAAATATGTATCAGTATCAAACTCTTCTCAGAAATTTGCCACCCACCAGATGCATGAGTAGGACTTCGTTTGAGCTCAACACAGACAATGGTGTTGTGCGGTTTTCAATTGGTAAGCCACTTGATGAAACTGGTTCCTTGACACAAGGGAAGAAGGTGGCCAAACGAGTTAAAATGTCCAAGAAGGCCAAACTGAATGAACTACGATTTTATCGTTTAAAGGCCAAAAAGAAGATCAATTCTCCAAATCCGGAAGTTAGGATTAGATACAAACTTGAAAAGGCAAAACGAAAGGAAGCATGGTTGATTGAGAAGTTGAGAAAATTCCAGGTTCACAAAGCTTCTGCTGAAACACATGATCCTGAAATTTTAACTGAAGAAGAAAAGCATTATCTTAAGCGAACTGGTGAGAAAAAGAAGAACTATGTGCCAGTTGGAAGGCGGGGAGTATTTGGAGGGGTTGTTTTAAATATGCATCTGCATTGGAAGAAGCATGAGACAGTAAAGGTTATATGCAAACCTTGTAAGCCAGGACAGGTTCATGAATATGCTGATGAGCTAGCTCGGCTGAGCAAAGGCATAGTGATTGACATCAAACCTAATAATACTATAATTTTCTATCGGGGGAAGAACTATGTGCAGCCGGAAGTAATGTCACCACCAGATACACTGTCCAAAAATAAGGCGCTCAAAAAATATAGGTATGAGCAGTCCCTCGAACATACAAGCCAGTTTATTGAAAAATTGGAGAAAGAACTAGAGGAATATCACCAGCATCTTGCTCGGTTTAAGAAAGTAAAAGAGGATACGACACAAGATTGTTTGATCTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

449

Amino Acids

51.26

Weight (kDa)

9.7

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	41 - 95	4.3e-08	Ras family
CRS1_YhbY	PF01985	294 - 378	5.8e-19	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13070
fragaria_vesca	FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180
malus_domestica	MD10G1049100.v1.1
prunus_persica	Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491551
rosa_laevigata	RLG00000022837 RLG00000022839
rosa_multiflora	Rmu_sc0001267.1_g000015
rosa_roxburghii	Rroxscaffold_6G00392910 Rroxscaffold_6G00392940
rosa_rugosa	Rorug03G0250200
rosa_samantha	Rh3AG299200 Rh3BG335000 Rh3BG335600 Rh3CG331800 Rh3DG333500
rosa_wichuraiana	Rw3G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	442
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	5 cut(s)	5, 288, 367, 610, 952
AclWI	GGATC	1 cut(s)	863
AcoI	YGGCCR	2 cut(s)	381, 669
AcsI	RAATTY	4 cut(s)	355, 544, 833, 876
AcuI	CTGAAG	2 cut(s)	176, 906
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	67, 466
AflII	CTTAAG	1 cut(s)	905
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	6 cut(s)	108, 185, 327, 618, 788, 1250
AjnI	CCWGG	3 cut(s)	60, 837, 1039
AluBI	AGCT	6 cut(s)	233, 456, 586, 851, 1069, 1073
AluI	AGCT	6 cut(s)	233, 456, 586, 851, 1069, 1073
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	3 cut(s)	117, 406, 1001
AlwI	GGATC	1 cut(s)	863
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	4 cut(s)	381, 669, 696, 732
ApeKI	GCWGC	2 cut(s)	120, 1150
ApoI	RAATTY	4 cut(s)	355, 544, 833, 876
Asp700I	GAANNNNTTC	2 cut(s)	103, 189
AspLEI	GCGC	1 cut(s)	1198
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	4 cut(s)	34, 929, 1158, 1271
AsuNHI	GCTAGC	1 cut(s)	1069
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	2 cut(s)	383, 671
BanII	GRGCYC	2 cut(s)	74, 588
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	132, 1162
BccI	CCATC	2 cut(s)	278, 325
BcgI	CGANNNNNNTGC	2 cut(s)	1274, 1308
BciT130I	CCWGG	3 cut(s)	62, 839, 1041
BciVI	GTATCC	1 cut(s)	1309
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	3 cut(s)	117, 406, 1001
BfaI	CTAG	2 cut(s)	1070, 1268
BfmI	CTRYAG	1 cut(s)	1339
BfoI	RGCGCY	1 cut(s)	1199
BfrI	CTTAAG	1 cut(s)	905
BfuI	GTATCC	1 cut(s)	1309
BisI	GCNGC	3 cut(s)	6, 121, 1151
BlpI	GCTNAGC	2 cut(s)	503, 1079
BlsI	GCNGC	3 cut(s)	7, 122, 1152
Bme1390I	CCNGG	4 cut(s)	62, 461, 839, 1041
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	4 cut(s)	62, 461, 839, 1041
BmsI	GCATC	6 cut(s)	211, 345, 479, 551, 994, 1294
BmtI	GCTAGC	1 cut(s)	1073
Bpu1102I	GCTNAGC	2 cut(s)	503, 1079
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	2 cut(s)	335, 1100
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 466
Bse1I	ACTGG	5 cut(s)	203, 646, 919, 941, 1240
Bse8I	GATNNNNATC	2 cut(s)	335, 1100
BseAI	TCCGGA	1 cut(s)	760
BseBI	CCWGG	3 cut(s)	62, 839, 1041
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	336, 470
BseJI	GATNNNNATC	2 cut(s)	335, 1100
BseLI	CCNNNNNNNGG	2 cut(s)	67, 466
BseMII	CTCAG	6 cut(s)	128, 231, 494, 498, 553, 1070
BseNI	ACTGG	5 cut(s)	203, 646, 919, 941, 1240
BseXI	GCAGC	2 cut(s)	132, 1162
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	1169
BshFI	GGCC	4 cut(s)	383, 671, 698, 734
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	3 cut(s)	460, 761, 1154
BslFI	GGGAC	2 cut(s)	96, 1207
BslI	CCNNNNNNNGG	2 cut(s)	67, 466
BsmAI	GTCTC	3 cut(s)	117, 406, 1001
BsmBI	CGTCTC	1 cut(s)	406
BsmFI	GGGAC	2 cut(s)	96, 1207
BsnI	GGCC	4 cut(s)	383, 671, 698, 734
Bsp1286I	GDGCHC	2 cut(s)	74, 588
Bsp13I	TCCGGA	1 cut(s)	760
Bsp143I	GATC	5 cut(s)	176, 509, 744, 868, 1335
Bsp1720I	GCTNAGC	2 cut(s)	503, 1079
BspACI	CCGC	5 cut(s)	5, 288, 367, 610, 952
BspANI	GGCC	4 cut(s)	383, 671, 698, 734
BspCNI	CTCAG	6 cut(s)	127, 232, 495, 497, 552, 1071
BspEI	TCCGGA	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	1051
BspLI	GGNNCC	1 cut(s)	646
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	1 cut(s)	863
BspTI	CTTAAG	1 cut(s)	905
BsrI	ACTGG	5 cut(s)	203, 646, 919, 941, 1240
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	5 cut(s)	176, 509, 744, 868, 1335
BssNAI	GTATAC	1 cut(s)	443
BssNI	GRCGYC	1 cut(s)	399
Bst1107I	GTATAC	1 cut(s)	443
Bst2UI	CCWGG	3 cut(s)	62, 839, 1041
Bst4CI	ACNGT	2 cut(s)	1012, 1182
Bst6I	CTCTTC	2 cut(s)	429, 540
BstACI	GRCGYC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	905
BstC8I	GCNNGC	1 cut(s)	1071
BstDEI	CTNAG	7 cut(s)	114, 173, 240, 484, 503, 539, 1079
BstF5I	GGATG	2 cut(s)	336, 470
BstH2I	RGCGCY	1 cut(s)	1199
BstHHI	GCGC	1 cut(s)	1198
BstKTI	GATC	5 cut(s)	179, 512, 747, 871, 1338
BstMAI	GTCTC	3 cut(s)	117, 406, 1001
BstMBI	GATC	5 cut(s)	176, 509, 744, 868, 1335
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 308, 1075
BstNI	CCWGG	3 cut(s)	62, 839, 1041
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	4 cut(s)	60, 459, 837, 1039
BstSFI	CTRYAG	1 cut(s)	1339
BstV1I	GCAGC	2 cut(s)	132, 1162
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstZ17I	GTATAC	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	1309
BsuRI	GGCC	4 cut(s)	383, 671, 698, 734
BtsCI	GGATG	2 cut(s)	336, 470
BtsIMutI	CAGTG	2 cut(s)	237, 1178
Cac8I	GCNNGC	1 cut(s)	1071
CciI	TCATGA	1 cut(s)	1051
CfoI	GCGC	1 cut(s)	1198
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	6 cut(s)	436, 565, 810, 866, 1004, 1052
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	7 cut(s)	114, 173, 240, 484, 503, 539, 1079
DpnI	GATC	5 cut(s)	178, 511, 746, 870, 1337
DpnII	GATC	5 cut(s)	176, 509, 744, 868, 1335
DraI	TTTAAA	2 cut(s)	729, 978
EaeI	YGGCCR	2 cut(s)	381, 669
Eam1104I	CTCTTC	2 cut(s)	429, 540
EarI	CTCTTC	2 cut(s)	429, 540
EciI	GGCGGA	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	586
Eco24I	GRGCYC	2 cut(s)	74, 588
Eco47I	GGWCC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	2 cut(s)	176, 906
EcoICRI	GAGCTC	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	3 cut(s)	60, 837, 1039
EcoT22I	ATGCAT	2 cut(s)	566, 987
EcoT38I	GRGCYC	2 cut(s)	74, 588
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	6 cut(s)	439, 568, 813, 869, 1007, 1055
FaqI	GGGAC	2 cut(s)	96, 1207
FatI	CATG	6 cut(s)	435, 564, 809, 865, 1003, 1051
FauI	CCCGC	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	3 cut(s)	6, 121, 1151
FokI	GGATG	2 cut(s)	343, 457
FriOI	GRGCYC	2 cut(s)	74, 588
Fsp4HI	GCNGC	3 cut(s)	6, 121, 1151
FspBI	CTAG	2 cut(s)	1070, 1268
GlaI	GCGC	1 cut(s)	1197
GluI	GCNGC	3 cut(s)	6, 121, 1151
GsaI	CCCAGC	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	1199
HaeIII	GGCC	4 cut(s)	383, 671, 698, 734
HapII	CCGG	3 cut(s)	460, 761, 1154
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	1198
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	6 cut(s)	439, 568, 813, 869, 1007, 1055
Hin6I	GCGC	1 cut(s)	1196
HinP1I	GCGC	1 cut(s)	1196
HindIII	AAGCTT	1 cut(s)	849
HinfI	GANTC	2 cut(s)	419, 491
HpaII	CCGG	3 cut(s)	460, 761, 1154
HphI	GGTGA	4 cut(s)	34, 929, 1158, 1271
Hpy166II	GTNNAC	2 cut(s)	443, 844
Hpy188I	TCNGA	2 cut(s)	195, 542
Hpy188III	TCNNGA	4 cut(s)	206, 761, 872, 1052
Hpy8I	GTNNAC	2 cut(s)	443, 844
HpyAV	CCTTC	5 cut(s)	19, 484, 658, 688, 942
HpyCH4III	ACNGT	2 cut(s)	1012, 1182
HpyCH4V	TGCA	5 cut(s)	564, 985, 991, 1026, 1150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 308, 1075
HpyF3I	CTNAG	7 cut(s)	114, 173, 240, 484, 503, 539, 1079
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	6 cut(s)	439, 568, 813, 869, 1007, 1055
HspAI	GCGC	1 cut(s)	1196
Kpn2I	TCCGGA	1 cut(s)	760
Kzo9I	GATC	5 cut(s)	176, 509, 744, 868, 1335
LmnI	GCTCC	2 cut(s)	134, 369
Lsp1109I	GCAGC	2 cut(s)	132, 1162
LweI	GCATC	6 cut(s)	211, 345, 479, 551, 994, 1294
MaeI	CTAG	2 cut(s)	1070, 1268
MaeIII	GTNAC	2 cut(s)	431, 1164
MalI	GATC	5 cut(s)	178, 511, 746, 870, 1337
MboI	GATC	5 cut(s)	176, 509, 744, 868, 1335
MboII	GAAGA	9 cut(s)	416, 527, 673, 754, 899, 902, 940, 1009, 1150
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	2 cut(s)	74, 588
MlsI	TGGCCA	2 cut(s)	383, 671
MluCI	AATT	9 cut(s)	273, 355, 544, 618, 748, 833, 876, 1122, 1253
MluNI	TGGCCA	2 cut(s)	383, 671
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	925
MnlI	CCTC	6 cut(s)	235, 338, 959, 1235, 1264, 1306
Mox20I	TGGCCA	2 cut(s)	383, 671
Mph1103I	ATGCAT	2 cut(s)	566, 987
MroI	TCCGGA	1 cut(s)	760
MroXI	GAANNNNTTC	2 cut(s)	103, 189
MscI	TGGCCA	2 cut(s)	383, 671
MseI	TTAA	6 cut(s)	681, 728, 881, 906, 977, 1299
MslI	CAYNNNNRTG	1 cut(s)	1056
Msp20I	TGGCCA	2 cut(s)	383, 671
MspA1I	CMGCKG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	3 cut(s)	460, 761, 1154
MspR9I	CCNGG	4 cut(s)	62, 461, 839, 1041
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	3 cut(s)	62, 839, 1041
MwoI	GCNNNNNNNGC	3 cut(s)	294, 308, 1075
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	5 cut(s)	176, 509, 744, 868, 1335
NheI	GCTAGC	1 cut(s)	1069
NlaIII	CATG	6 cut(s)	439, 568, 813, 869, 1007, 1055
NlaIV	GGNNCC	1 cut(s)	646
NmeAIII	GCCGAG	1 cut(s)	1054
NmuCI	GTSAC	2 cut(s)	431, 1164
NsiI	ATGCAT	2 cut(s)	566, 987
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	1 cut(s)	1051
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	721
PdmI	GAANNNNTTC	2 cut(s)	103, 189
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	3 cut(s)	7, 122, 1152
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	3 cut(s)	60, 837, 1039
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	3 cut(s)	60, 837, 1039
PspN4I	GGNNCC	1 cut(s)	646
PspPI	GGNCC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	1056
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	6 cut(s)	681, 728, 881, 906, 977, 1299
SatI	GCNGC	3 cut(s)	6, 121, 1151
Sau3AI	GATC	5 cut(s)	176, 509, 744, 868, 1335
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	4 cut(s)	62, 461, 839, 1041
SduI	GDGCHC	2 cut(s)	74, 588
SfaNI	GCATC	6 cut(s)	211, 345, 479, 551, 994, 1294
SfcI	CTRYAG	1 cut(s)	1339
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	1056
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
Sse9I	AATT	9 cut(s)	273, 355, 544, 618, 748, 833, 876, 1122, 1253
SsiI	CCGC	5 cut(s)	5, 288, 367, 610, 952
SspMI	CTAG	2 cut(s)	1070, 1268
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	4 cut(s)	60, 459, 837, 1039
TaaI	ACNGT	2 cut(s)	1012, 1182
TaqI	TCGA	2 cut(s)	47, 1227
TasI	AATT	9 cut(s)	273, 355, 544, 618, 748, 833, 876, 1122, 1253
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	6 cut(s)	681, 728, 881, 906, 977, 1299
Tru9I	TTAA	6 cut(s)	681, 728, 881, 906, 977, 1299
TscAI	CASTG	2 cut(s)	244, 1185
TseFI	GTSAC	2 cut(s)	431, 1164
TseI	GCWGC	2 cut(s)	120, 1150
Tsp45I	GTSAC	2 cut(s)	431, 1164
TspDTI	ATGAA	4 cut(s)	651, 723, 1040, 1068
TspRI	CASTG	2 cut(s)	244, 1185
Vha464I	CTTAAG	1 cut(s)	905
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	4 cut(s)	355, 544, 833, 876
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	442
XmnI	GAANNNNTTC	2 cut(s)	103, 189
XspI	CTAG	2 cut(s)	1070, 1268
Zsp2I	ATGCAT	2 cut(s)	566, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.