Rroxscaffold_6G00392940

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006327
Physical Location & Seq
Reverse (-)
12729937 .. 12736507
6571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392940.1

Sequence Viewer

Length: 1017 bp
ATGGGCATCGCAGGAGGAACAAGGAATTCGTTGCTCCGCTTCTGTTGTTTGGCCAAAAATGTGTTAGGCCTGTCTTTGCCAACCGTAGGCTCTCTTCCTTGTCACATGTGTATACAAAGGCAAAGCTACCAGGTTATGGCATCTTTCGTACTCTCAGCAGATTCTGCATTGCTGAGCCAATCAAATTTGTATCAGTATCAAACTCTTCTCAGAAATTTGCCACCCACCAGATGCATGAGTAGGACTTCGTTTGAGCTCAACACAGACAATGGTGTTGTGCGGTTTTCAATTGGTAAGCCACTTGATGAAACTGGTTCCTTGACACAAGGGAAGAAGGTGGCCAAACGAGTTAAAATGTCCAAGAAGGCCAAACTGAATGAACTACGATTTTATCGTCTAAAGGCCAAAAAGAAGATCAATTCTCCAAATCCGGAAGTTAGGATTAGATACAAACTTGAAAAGGCAAAACGAAAGGAAGCATGGTTGATTGAGAAGTTGAGAAAATTCCAGGTTCACAAAGCTTCTGCTGAGACACATGATCCTGAAATTTTAACTGAAGAAGAAAAGCATTATCTTAAGCGAACTGGTGAGAAAAAGAAGAACTATGTGCCAGTTGGAAGGCGGGGAGTATTTGGAGGGGTTGTTTTAAATATGCATCTGCATTGGAAGAAGCATGAGACAGTAAAGGTTATATGCAAACCTTGTAAGCCAGGACAGGTTCATGAATATGCTGATGAGCTAGCTCGGCTGAGCAAAGGCATAGTGATTGACATCAAATCTAATAATACTATAATCTTCTATCGGGGGAAGAACTATGTGCAGCCGGAAGTAATGTCACCACCAGATACACTGTCCAAAAATAAGGCGCTCGAAAAATATAGGTATGAGCAGTCCCTCGAACATACAAGTCAGTTTATTGAAAAATTGGAGAAAGAACTAGAGGAATATCACCAGCATCTTGCTCGGTTTAAGAAAGTAAAAGAGGATACGACACAAGATTGTTTGATCTATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

338

Amino Acids

39.04

Weight (kDa)

9.76

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 184 - 268 2.7e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AccI GTMKAC 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 3 cut(s) 37, 280, 622
AclWI GGATC 1 cut(s) 533
AcoI YGGCCR 2 cut(s) 51, 339
AcsI RAATTY 5 cut(s) 25, 184, 214, 503, 546
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 86, 136
AflII CTTAAG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 3 cut(s) 288, 458, 920
AjnI CCWGG 3 cut(s) 129, 507, 709
AluBI AGCT 5 cut(s) 126, 256, 521, 739, 743
AluI AGCT 5 cut(s) 126, 256, 521, 739, 743
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 524, 671
AlwI GGATC 1 cut(s) 533
AlwNI CAGNNNCTG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 5 cut(s) 51, 67, 339, 366, 402
ApeKI GCWGC 1 cut(s) 820
ApoI RAATTY 5 cut(s) 25, 184, 214, 503, 546
AspLEI GCGC 1 cut(s) 868
AsuHPI GGTGA 3 cut(s) 599, 828, 941
AsuNHI GCTAGC 1 cut(s) 739
BalI TGGCCA 2 cut(s) 53, 341
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 78, 110
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 832
BcgI CGANNNNNNTGC 2 cut(s) 944, 978
BciT130I CCWGG 3 cut(s) 131, 509, 711
BciVI GTATCC 1 cut(s) 979
BcoDI GTCTC 2 cut(s) 524, 671
BfaI CTAG 2 cut(s) 740, 938
BfmI CTRYAG 1 cut(s) 1009
BfoI RGCGCY 1 cut(s) 869
BfrI CTTAAG 1 cut(s) 575
BfuI GTATCC 1 cut(s) 979
BisI GCNGC 1 cut(s) 821
BlpI GCTNAGC 2 cut(s) 173, 749
BlsI GCNGC 1 cut(s) 822
Bme1390I CCNGG 3 cut(s) 131, 509, 711
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 3 cut(s) 131, 509, 711
BmsI GCATC 5 cut(s) 15, 149, 221, 664, 964
BmtI GCTAGC 1 cut(s) 743
Bpu1102I GCTNAGC 2 cut(s) 173, 749
BsaBI GATNNNNATC 1 cut(s) 770
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 136
Bse1I ACTGG 3 cut(s) 316, 589, 611
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 770
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 3 cut(s) 131, 509, 711
BseJI GATNNNNATC 1 cut(s) 770
BseLI CCNNNNNNNGG 2 cut(s) 86, 136
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 5 cut(s) 164, 168, 223, 519, 740
BseNI ACTGG 3 cut(s) 316, 589, 611
BseXI GCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 839
BshFI GGCC 5 cut(s) 53, 69, 341, 368, 404
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 431, 824
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 2 cut(s) 86, 136
BsmAI GTCTC 2 cut(s) 524, 671
BsmFI GGGAC 1 cut(s) 877
BsnI GGCC 5 cut(s) 53, 69, 341, 368, 404
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 414, 538, 1005
Bsp1720I GCTNAGC 2 cut(s) 173, 749
BspACI CCGC 3 cut(s) 37, 280, 622
BspANI GGCC 5 cut(s) 53, 69, 341, 368, 404
BspCNI CTCAG 5 cut(s) 165, 167, 222, 520, 741
BspEI TCCGGA 1 cut(s) 430
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 533
BspTI CTTAAG 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 3 cut(s) 316, 589, 611
BssMI GATC 3 cut(s) 414, 538, 1005
BssNAI GTATAC 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 113
Bst2UI CCWGG 3 cut(s) 131, 509, 711
Bst4CI ACNGT 3 cut(s) 85, 682, 852
Bst6I CTCTTC 2 cut(s) 99, 210
BstAFI CTTAAG 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 5 cut(s) 154, 173, 209, 528, 749
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 3 cut(s) 417, 541, 1008
BstMAI GTCTC 2 cut(s) 524, 671
BstMBI GATC 3 cut(s) 414, 538, 1005
BstMWI GCNNNNNNNGC 2 cut(s) 164, 745
BstNI CCWGG 3 cut(s) 131, 509, 711
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 3 cut(s) 129, 507, 709
BstSFI CTRYAG 1 cut(s) 1009
BstV1I GCAGC 1 cut(s) 832
BstZ17I GTATAC 1 cut(s) 113
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 5 cut(s) 53, 69, 341, 368, 404
BtsIMutI CAGTG 1 cut(s) 848
Cac8I GCNNGC 1 cut(s) 741
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 868
CsiI ACCWGGT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 149
CviAII CATG 6 cut(s) 106, 235, 480, 536, 674, 722
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 5 cut(s) 154, 173, 209, 528, 749
DpnI GATC 3 cut(s) 416, 540, 1007
DpnII GATC 3 cut(s) 414, 538, 1005
DraI TTTAAA 1 cut(s) 648
EaeI YGGCCR 2 cut(s) 51, 339
Eam1104I CTCTTC 2 cut(s) 99, 210
EarI CTCTTC 2 cut(s) 99, 210
Ecl136II GAGCTC 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 576
EcoICRI GAGCTC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 129, 507, 709
EcoT22I ATGCAT 2 cut(s) 236, 657
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 6 cut(s) 109, 238, 483, 539, 677, 725
FaqI GGGAC 1 cut(s) 877
FatI CATG 6 cut(s) 105, 234, 479, 535, 673, 721
FauI CCCGC 1 cut(s) 615
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 821
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 821
FspBI CTAG 2 cut(s) 740, 938
GlaI GCGC 1 cut(s) 867
GluI GCNGC 1 cut(s) 821
HaeII RGCGCY 1 cut(s) 869
HaeIII GGCC 5 cut(s) 53, 69, 341, 368, 404
HapII CCGG 2 cut(s) 431, 824
HhaI GCGC 1 cut(s) 868
Hin1II CATG 6 cut(s) 109, 238, 483, 539, 677, 725
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 431, 824
HphI GGTGA 3 cut(s) 599, 828, 941
Hpy166II GTNNAC 2 cut(s) 113, 514
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 431, 542, 722
Hpy8I GTNNAC 2 cut(s) 113, 514
HpyAV CCTTC 3 cut(s) 328, 358, 612
HpyCH4III ACNGT 3 cut(s) 85, 682, 852
HpyCH4V TGCA 6 cut(s) 167, 234, 655, 661, 696, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 745
HpyF3I CTNAG 5 cut(s) 154, 173, 209, 528, 749
Hsp92II CATG 6 cut(s) 109, 238, 483, 539, 677, 725
HspAI GCGC 1 cut(s) 866
Kpn2I TCCGGA 1 cut(s) 430
Kzo9I GATC 3 cut(s) 414, 538, 1005
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 5 cut(s) 15, 149, 221, 664, 964
MabI ACCWGGT 1 cut(s) 129
MaeI CTAG 2 cut(s) 740, 938
MaeIII GTNAC 2 cut(s) 101, 834
MalI GATC 3 cut(s) 416, 540, 1007
MboI GATC 3 cut(s) 414, 538, 1005
MfeI CAATTG 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 2 cut(s) 53, 341
MluCI AATT 8 cut(s) 25, 184, 214, 288, 418, 503, 546, 923
MluNI TGGCCA 2 cut(s) 53, 341
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 5 cut(s) 8, 629, 905, 934, 976
Mox20I TGGCCA 2 cut(s) 53, 341
Mph1103I ATGCAT 2 cut(s) 236, 657
MroI TCCGGA 1 cut(s) 430
MscI TGGCCA 2 cut(s) 53, 341
MseI TTAA 5 cut(s) 351, 551, 576, 647, 969
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 2 cut(s) 53, 341
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 2 cut(s) 431, 824
MspR9I CCNGG 3 cut(s) 131, 509, 711
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 3 cut(s) 131, 509, 711
MwoI GCNNNNNNNGC 2 cut(s) 164, 745
NdeII GATC 3 cut(s) 414, 538, 1005
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 6 cut(s) 109, 238, 483, 539, 677, 725
NlaIV GGNNCC 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 2 cut(s) 101, 834
NsiI ATGCAT 2 cut(s) 236, 657
NspI RCATGY 1 cut(s) 109
PagI TCATGA 1 cut(s) 721
PceI AGGCCT 1 cut(s) 69
PciI ACATGT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 1 cut(s) 822
PscI ACATGT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 3 cut(s) 129, 507, 709
PspGI CCWGG 3 cut(s) 129, 507, 709
PspN4I GGNNCC 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 5 cut(s) 351, 551, 576, 647, 969
SatI GCNGC 1 cut(s) 821
Sau3AI GATC 3 cut(s) 414, 538, 1005
ScrFI CCNGG 3 cut(s) 131, 509, 711
SduI GDGCHC 1 cut(s) 258
SexAI ACCWGGT 1 cut(s) 129
SfaNI GCATC 5 cut(s) 15, 149, 221, 664, 964
SfcI CTRYAG 1 cut(s) 1009
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 8 cut(s) 25, 184, 214, 288, 418, 503, 546, 923
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 3 cut(s) 37, 280, 622
SspMI CTAG 2 cut(s) 740, 938
SstI GAGCTC 1 cut(s) 258
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 129, 507, 709
TaaI ACNGT 3 cut(s) 85, 682, 852
TaqI TCGA 2 cut(s) 870, 897
TasI AATT 8 cut(s) 25, 184, 214, 288, 418, 503, 546, 923
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 5 cut(s) 351, 551, 576, 647, 969
Tru9I TTAA 5 cut(s) 351, 551, 576, 647, 969
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 2 cut(s) 101, 834
TseI GCWGC 1 cut(s) 820
Tsp45I GTSAC 2 cut(s) 101, 834
TspDTI ATGAA 4 cut(s) 321, 393, 710, 738
TspRI CASTG 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 575
XapI RAATTY 5 cut(s) 25, 184, 214, 503, 546
XceI RCATGY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 2 cut(s) 740, 938
Zsp2I ATGCAT 2 cut(s) 236, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.