Rorug03G0250200

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006327
Physical Location & Seq
Reverse (-)
23599248 .. 23601648
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0250200.1

Sequence Viewer

Length: 1308 bp
ATGACTTTTCGTGTATCACATATTTTTCGTGAAGGTAATAAGGTAGCTGATGCTTTGGCGAATTATGGTACGACTGCTCCTAATATGGTGTGGTGGGATGCTCCACCATCTTTTCTTTTATCGCATTGTCAGAGTGACCAATTGGGTTTTCCCCAATTTCGGTACGAAAATGGACGATGTGAAGCATTTATTTGGGATAACACGGATCCAGAAGAGAAATCCAAGACAAGTGGATTTGAAGTAGAAGAGGATGCAGCTAGAGCTCATGACCTAGCTGCTCTAAAATTATGGGGAGAGTCTGCGAGTTTGAATTTTCCGTTAAGCAACTACGTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACTTTCTACACATCAGAAGAAGCAAGACGGGTTTAGCCAAGACGGTATCCAATTACCGTGGAGTTTCGAGGAACGCGCACAACAAAAAATGGCAAGTTAGGTTAGGAAAAGGAAAAGACATTGATAGCATTTACGTGGGAACATTTGATACCGAAGAGCAAGCCGCCGAAGCATATGACGTTGCAGCTATAAGGGTGAAAGGGCCGAAAGCAATCACCAATTTTGATAAAAGTAACTACGATGTCAAACAGATTCTTGAAAGCCCAAAATTTCTAATTGATAAAGGTGCATCGAAGACGTTGAGGCGGAGTTCAGTTGATGATGTGCTTCAAAAGAGAAGAAAGACTCGCAATGACTCCAGCTCAACCCCTAGTGCCCCACCACCACTTCACCCAATCGATCAAACTCAACCAACGGCAATCGATTCAAGCCTTCAATATCAATTTCCGATCCCTTACCTCCAAGTTCCAGTCCCTCACGGTTACCAAAACCCTATCTTTGAAGCAAACCGAAGTTTCAGTCCTCAGTATGACTATGGTGGAAGTGAGCCAATAGCCCAGCTTCAACCTTTCATACCCTTATTGAATCAAGAGTTTCCATCTCACCAGTATTGTAACAGCAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCCCAGTTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTGGGTTGAACAACCTTGCAAGTGATAGCTGTACGGAAGAATTTTCCAGCAGTCAGGTTCATGAGGCGAGTTTCGAGATGATGGGGACGAACGAGGGTGGTGCTCACGGTGATGGTAGCAGTCAAGTAGTTGGAAATCTTGGTGATCCTGTGTTTGGGCTGGGCAATTCTGACTTGGATCCTGTTAGCTGGCTGGAAACGTTCTTGAGGATGAGCCCACAACGTCCTGATTCTAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

435

Amino Acids

48.64

Weight (kDa)

5.5

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 141 - 192 3.1e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 449
AciI CCGC 2 cut(s) 537, 679
AclI AACGTT 1 cut(s) 1265
AclWI GGATC 6 cut(s) 200, 213, 817, 1205, 1238, 1251
AcsI RAATTY 3 cut(s) 310, 641, 1106
AfaI GTAC 3 cut(s) 70, 164, 1099
AfiI CCNNNNNNNGG 2 cut(s) 159, 1220
AjnI CCWGG 1 cut(s) 339
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
Alw21I GWGCWC 2 cut(s) 265, 1171
AlwI GGATC 6 cut(s) 200, 213, 817, 1205, 1238, 1251
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 3 cut(s) 254, 275, 557
ApoI RAATTY 3 cut(s) 310, 641, 1106
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 6 cut(s) 580, 580, 755, 968, 1187, 1220
BaeGI GKGCMC 1 cut(s) 751
BamHI GGATCC 2 cut(s) 205, 1243
BanII GRGCYC 2 cut(s) 265, 1283
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BbsI GAAGAC 1 cut(s) 674
Bbv12I GWGCWC 2 cut(s) 265, 1171
BbvI GCAGC 3 cut(s) 262, 266, 569
BccI CCATC 4 cut(s) 115, 979, 1141, 1172
BceAI ACGGC 1 cut(s) 804
BcgI CGANNNNNNTGC 2 cut(s) 1148, 1182
BciT130I CCWGG 1 cut(s) 341
BciVI GTATCC 1 cut(s) 430
BclI TGATCA 1 cut(s) 1012
BfaI CTAG 4 cut(s) 258, 272, 744, 1023
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 4 cut(s) 255, 276, 537, 558
BlsI GCNGC 4 cut(s) 256, 277, 538, 559
Bme1390I CCNGG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 207, 1245
BmrFI CCNGG 1 cut(s) 341
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 4 cut(s) 40, 88, 241, 671
BmuI ACTGGG 1 cut(s) 1024
BpiI GAAGAC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 1291
Bsa29I ATCGAT 2 cut(s) 771, 795
BsaAI YACGTR 2 cut(s) 331, 508
BsaJI CCNNGG 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 1220
Bse1I ACTGG 3 cut(s) 842, 979, 1030
Bse3DI GCAATG 1 cut(s) 730
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 2 cut(s) 771, 795
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 3 cut(s) 103, 256, 1281
BseLI CCNNNNNNNGG 2 cut(s) 159, 1220
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 2 cut(s) 911, 1061
BseNI ACTGG 3 cut(s) 842, 979, 1030
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 3 cut(s) 262, 266, 569
BseYI CCCAGC 4 cut(s) 930, 999, 1067, 1225
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 1 cut(s) 577
BshVI ATCGAT 2 cut(s) 771, 795
BsiHKAI GWGCWC 2 cut(s) 265, 1171
BslFI GGGAC 2 cut(s) 830, 1165
BslI CCNNNNNNNGG 2 cut(s) 159, 1220
BsmFI GGGAC 2 cut(s) 830, 1165
BsnI GGCC 1 cut(s) 577
Bsp1286I GDGCHC 4 cut(s) 265, 751, 1171, 1283
Bsp143I GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
BspACI CCGC 2 cut(s) 537, 679
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 2 cut(s) 910, 1060
BspDI ATCGAT 2 cut(s) 771, 795
BspFNI CGCG 1 cut(s) 449
BspHI TCATGA 2 cut(s) 265, 1126
BspLI GGNNCC 2 cut(s) 207, 1245
BspPI GGATC 6 cut(s) 200, 213, 817, 1205, 1238, 1251
BspQI GCTCTTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 730
BsrI ACTGG 3 cut(s) 842, 979, 1030
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 4 cut(s) 418, 431, 854, 1175
Bst6I CTCTTC 3 cut(s) 207, 240, 522
BstBAI YACGTR 2 cut(s) 331, 508
BstC8I GCNNGC 2 cut(s) 534, 1256
BstDEI CTNAG 3 cut(s) 897, 1047, 1299
BstDSI CCRYGG 1 cut(s) 430
BstEII GGTNACC 1 cut(s) 854
BstF5I GGATG 3 cut(s) 103, 256, 1281
BstFNI CGCG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 6 cut(s) 208, 775, 825, 1015, 1213, 1246
BstMBI GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
BstMWI GCNNNNNNNGC 2 cut(s) 260, 542
BstNI CCWGG 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 854
BstSCI CCNGG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 751
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 262, 266, 569
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 2 cut(s) 205, 1243
BstYI RGATCY 2 cut(s) 205, 1243
Bsu15I ATCGAT 2 cut(s) 771, 795
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 1 cut(s) 577
BsuTUI ATCGAT 2 cut(s) 771, 795
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 3 cut(s) 103, 256, 1281
Cac8I GCNNGC 2 cut(s) 534, 1256
CciI TCATGA 2 cut(s) 265, 1126
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 575
ClaI ATCGAT 2 cut(s) 771, 795
Csp6I GTAC 3 cut(s) 69, 163, 1098
CspCI CAANNNNNGTGG 4 cut(s) 211, 246, 412, 447
CviAII CATG 2 cut(s) 266, 1127
CviQI GTAC 3 cut(s) 69, 163, 1098
DdeI CTNAG 3 cut(s) 897, 1047, 1299
DpnI GATC 6 cut(s) 207, 774, 824, 1014, 1212, 1245
DpnII GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
Eam1104I CTCTTC 3 cut(s) 207, 240, 522
EarI CTCTTC 3 cut(s) 207, 240, 522
EciI GGCGGA 1 cut(s) 694
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 2 cut(s) 265, 1283
Eco53kI GAGCTC 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 854
EcoICRI GAGCTC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 854
EcoRII CCWGG 1 cut(s) 339
EcoT38I GRGCYC 2 cut(s) 265, 1283
FaeI CATG 2 cut(s) 269, 1130
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 2 cut(s) 830, 1165
FatI CATG 2 cut(s) 265, 1126
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 1012
Fnu4HI GCNGC 4 cut(s) 255, 276, 537, 558
FokI GGATG 3 cut(s) 110, 263, 1288
FriOI GRGCYC 2 cut(s) 265, 1283
Fsp4HI GCNGC 4 cut(s) 255, 276, 537, 558
FspBI CTAG 4 cut(s) 258, 272, 744, 1023
GlaI GCGC 1 cut(s) 450
GluI GCNGC 4 cut(s) 255, 276, 537, 558
GsaI CCCAGC 4 cut(s) 934, 1003, 1071, 1229
GsuI CTGGAG 1 cut(s) 715
HaeIII GGCC 1 cut(s) 577
HhaI GCGC 1 cut(s) 451
Hin1II CATG 2 cut(s) 269, 1130
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 7 cut(s) 296, 625, 718, 728, 797, 958, 1295
HphI GGTGA 6 cut(s) 580, 580, 755, 968, 1187, 1220
Hpy188I TCNGA 5 cut(s) 132, 389, 822, 1050, 1237
HpyAV CCTTC 4 cut(s) 26, 361, 815, 1046
HpyCH4III ACNGT 4 cut(s) 418, 431, 854, 1175
HpyCH4IV ACGT 6 cut(s) 330, 507, 552, 671, 1265, 1288
HpyCH4V TGCA 4 cut(s) 254, 557, 662, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 542
HpyF3I CTNAG 3 cut(s) 897, 1047, 1299
HpySE526I ACGT 6 cut(s) 330, 507, 552, 671, 1265, 1288
Hsp92II CATG 2 cut(s) 269, 1130
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 3 cut(s) 82, 106, 1031
Lsp1109I GCAGC 3 cut(s) 262, 266, 569
LweI GCATC 4 cut(s) 40, 88, 241, 671
MaeI CTAG 4 cut(s) 258, 272, 744, 1023
MaeII ACGT 6 cut(s) 330, 507, 552, 671, 1265, 1288
MaeIII GTNAC 4 cut(s) 134, 605, 854, 986
MalI GATC 6 cut(s) 207, 774, 824, 1014, 1212, 1245
MboI GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
MboII GAAGA 9 cut(s) 224, 257, 356, 376, 402, 539, 679, 723, 1115
MfeI CAATTG 1 cut(s) 140
MflI RGATCY 2 cut(s) 205, 1243
MhlI GDGCHC 4 cut(s) 265, 751, 1171, 1283
MlyI GAGTC 3 cut(s) 305, 712, 722
MmeI TCCRAC 1 cut(s) 1177
MnlI CCTC 9 cut(s) 241, 435, 669, 842, 858, 906, 1123, 1153, 1266
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 1 cut(s) 320
MslI CAYNNNNRTG 2 cut(s) 506, 1176
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 260, 542
NdeI CATATG 1 cut(s) 547
NdeII GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
NlaIII CATG 2 cut(s) 269, 1130
NlaIV GGNNCC 2 cut(s) 207, 1245
NmuCI GTSAC 1 cut(s) 134
PagI TCATGA 2 cut(s) 265, 1126
PciSI GCTCTTC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 4 cut(s) 625, 797, 958, 1295
PkrI GCNGC 4 cut(s) 256, 277, 538, 559
PleI GAGTC 3 cut(s) 304, 712, 722
PpsI GAGTC 3 cut(s) 304, 712, 722
Ppu21I YACGTR 2 cut(s) 331, 508
Psp124BI GAGCTC 1 cut(s) 265
Psp1406I AACGTT 1 cut(s) 1265
Psp6I CCWGG 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 854
PspFI CCCAGC 4 cut(s) 930, 999, 1067, 1225
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 207, 1245
PspPI GGNCC 1 cut(s) 575
PsrI GAACNNNNNNTAC 2 cut(s) 505, 537
PsuI RGATCY 2 cut(s) 205, 1243
RsaI GTAC 3 cut(s) 70, 164, 1099
RsaNI GTAC 3 cut(s) 69, 163, 1098
RseI CAYNNNNRTG 2 cut(s) 506, 1176
SacI GAGCTC 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 4 cut(s) 255, 276, 537, 558
Sau3AI GATC 6 cut(s) 205, 772, 822, 1012, 1210, 1243
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 3 cut(s) 305, 712, 722
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 4 cut(s) 265, 751, 1171, 1283
SfaNI GCATC 4 cut(s) 40, 88, 241, 671
SmiMI CAYNNNNRTG 2 cut(s) 506, 1176
SmlI CTYRAG 1 cut(s) 1270
SmoI CTYRAG 1 cut(s) 1270
SsiI CCGC 2 cut(s) 537, 679
SspMI CTAG 4 cut(s) 258, 272, 744, 1023
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 4 cut(s) 418, 431, 854, 1175
TaiI ACGT 6 cut(s) 333, 510, 555, 674, 1268, 1291
TaqI TCGA 5 cut(s) 440, 665, 771, 795, 1140
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 4 cut(s) 625, 797, 958, 1295
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 3 cut(s) 254, 275, 557
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 365, 934, 1115
TspGWI ACGGA 3 cut(s) 218, 306, 1115
XapI RAATTY 3 cut(s) 310, 641, 1106
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 4 cut(s) 258, 272, 744, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.