Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006327

Physical Location & Seq

Genomic Coordinates Forward (+)

242806 .. 248763

Gene Structure 5958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTTTGCTTCAACTTCTGTAAGAGCCGCTTCTCGCTCTTCTCCGAGTGCCATCAAAAGGGGCTCTTTTGTCTGGTTCAGTTGTCTAGCACAAAATATTTTCAATCTCTCTTTGCCAACCATAGCACGTTTTAGACAGTCTCTTTATTGCAATATGTGTATGCAAAGGCAAAGATACAGTGTATTGACGTCTTTCTTAGAAGTTCCATATGTATCCTCCTCATTCGATTCTTCATTGGTGCGGAGATCAAATATTTTTGACTGTCAAAGTGTTCTTAGAAACTGTCCGCCTGCTAGATGCATGAGTAGTACATCAATTGAGCTGAAGACAAAAAATGATGTTGTGAGGTTTTCATTTGGTAAGCCACTTGATAAAACTGGTTCCTCAACCAAAGGGAAGAAGATGGCCAAACGAGCTGAAGTGTCCAAGAAGGCCAAACTGAATGAACTGCGATTTTACCGTCTGAAGGCCAAGAAGAAGATGAATTCTCCAAATCCAGAAGTTAGAATTAGATACAAACTTGAAAAGGCAAAACGAAAGGAAGCATGGTTGATTGAGAAGTTGATGAAATTTGAGGTTGCCAAAGCCCCTGCTGATATACATGATCCTGAAATTTTAACTGAAGAAGAAAAACATTATCTTAAGAGAACTGGTGAGAAAAAGAAGAATTATGTCCCAGTAGGAAGGCGGGGAGTATTTGGAGGTGTGGTTCTAAATATGCATTTGCATTGGAAGAAGCATGAGACAGTAAAGGTGATTTGCAAGCCTTGTAAGCCAGGACAGGTTCAGGAATATGCTCAAGAGCTTGCTAGACTGAGTAAAGGCATTGTGATTGACATAAAACCCAATAATACTGTAATTTTCTACCGGGGAAAGAACTATGTTCAGCCGAAAGTAATGTCACCTGCGGATACACTATCTAAAAATAAGGCCCTGGAAAAATATAAGTATGAGCAGTCCCTTGAACATACAAGTCAGTTCATTGAAAAACTGGGGAAAGAACTGGAAGAGTATCACAAGCACCTTGCTCGGTTTAAGAAAGTAAATGAGAATGCAACACAAGTCTTTGATCAACACATGAATGATAAGCTTGCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

367

Amino Acids

42.22

Weight (kDa)

9.93

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13070
fragaria_vesca	FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180 FvH4_1g30180
malus_domestica	MD10G1049100.v1.1
prunus_persica	Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1 Prupe.7G001900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491551
rosa_laevigata	RLG00000022837 RLG00000022839
rosa_multiflora	Rmu_sc0001267.1_g000015
rosa_roxburghii	Rroxscaffold_6G00392910 Rroxscaffold_6G00392940
rosa_rugosa	Rorug03G0250200
rosa_samantha	Rh3AG299200 Rh3BG335000 Rh3BG335600 Rh3CG331800 Rh3DG333500
rosa_wichuraiana	Rw3G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	913
AatII	GACGTC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	913
AciI	CCGC	5 cut(s)	27, 241, 287, 688, 908
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	3 cut(s)	484, 569, 612
AcuI	CTGAAG	4 cut(s)	344, 438, 485, 642
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	2 cut(s)	57, 466
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	5 cut(s)	12, 103, 524, 965, 986
AjnI	CCWGG	2 cut(s)	775, 933
AloI	GAACNNNNNNTCC	2 cut(s)	693, 725
AluBI	AGCT	4 cut(s)	322, 416, 805, 1090
AluI	AGCT	4 cut(s)	322, 416, 805, 1090
Alw26I	GTCTC	2 cut(s)	144, 737
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	4 cut(s)	405, 432, 468, 930
ApoI	RAATTY	3 cut(s)	484, 569, 612
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AspS9I	GGNCC	1 cut(s)	931
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	3 cut(s)	665, 766, 894
BalI	TGGCCA	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	332
BccI	CCATC	2 cut(s)	59, 397
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	2 cut(s)	777, 935
BciVI	GTATCC	2 cut(s)	223, 904
BclI	TGATCA	1 cut(s)	1069
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	2 cut(s)	144, 737
BfaI	CTAG	3 cut(s)	86, 294, 810
BfrI	CTTAAG	1 cut(s)	641
BfuAI	ACCTGC	1 cut(s)	913
BfuI	GTATCC	2 cut(s)	223, 904
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	3 cut(s)	777, 869, 935
BmgT120I	GGNCC	1 cut(s)	931
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	3 cut(s)	777, 869, 935
BmrI	ACTGGG	2 cut(s)	671, 1001
BmsI	GCATC	1 cut(s)	287
BmuI	ACTGGG	2 cut(s)	671, 1001
BpiI	GAAGAC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	783
BpuMI	CCSGG	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	868, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 466
Bse1I	ACTGG	6 cut(s)	382, 655, 677, 996, 1008, 1095
BseBI	CCWGG	2 cut(s)	777, 935
BseDI	CCNNGG	2 cut(s)	868, 933
BseLI	CCNNNNNNNGG	2 cut(s)	57, 466
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	6 cut(s)	382, 655, 677, 996, 1008, 1095
BseRI	GAGGAG	1 cut(s)	208
BshFI	GGCC	4 cut(s)	407, 434, 470, 932
BsiSI	CCGG	1 cut(s)	868
BslFI	GGGAC	2 cut(s)	659, 943
BslI	CCNNNNNNNGG	2 cut(s)	57, 466
BsmAI	GTCTC	2 cut(s)	144, 737
BsmFI	GGGAC	2 cut(s)	659, 943
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	4 cut(s)	407, 434, 470, 932
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	245, 604, 1069
BspACI	CCGC	5 cut(s)	27, 241, 287, 688, 908
BspANI	GGCC	4 cut(s)	407, 434, 470, 932
BspCNI	CTCAG	1 cut(s)	807
BspLI	GGNNCC	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	1 cut(s)	599
BspQI	GCTCTTC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	641
BsrI	ACTGG	6 cut(s)	382, 655, 677, 996, 1008, 1095
BssECI	CCNNGG	2 cut(s)	868, 933
BssMI	GATC	3 cut(s)	245, 604, 1069
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	777, 935
Bst4CI	ACNGT	7 cut(s)	138, 179, 263, 284, 461, 748, 856
Bst6I	CTCTTC	2 cut(s)	43, 1002
BstACI	GRCGYC	1 cut(s)	188
BstAFI	CTTAAG	1 cut(s)	641
BstC8I	GCNNGC	4 cut(s)	291, 764, 807, 1092
BstDEI	CTNAG	3 cut(s)	196, 275, 815
BstKTI	GATC	3 cut(s)	248, 607, 1072
BstMAI	GTCTC	2 cut(s)	144, 737
BstMBI	GATC	3 cut(s)	245, 604, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 772
BstNI	CCWGG	2 cut(s)	777, 935
BstSCI	CCNGG	3 cut(s)	775, 867, 933
BstV2I	GAAGAC	1 cut(s)	332
BsuI	GTATCC	2 cut(s)	223, 904
BsuRI	GGCC	4 cut(s)	407, 434, 470, 932
BtsIMutI	CAGTG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	4 cut(s)	291, 764, 807, 1092
Cfr13I	GGNCC	1 cut(s)	931
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	5 cut(s)	301, 546, 602, 740, 1078
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	3 cut(s)	196, 275, 815
DpnI	GATC	3 cut(s)	247, 606, 1071
DpnII	GATC	3 cut(s)	245, 604, 1069
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	43, 1002
EarI	CTCTTC	2 cut(s)	43, 1002
EciI	GGCGGA	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	65
Eco57I	CTGAAG	4 cut(s)	344, 438, 485, 642
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	775, 933
EcoT22I	ATGCAT	2 cut(s)	302, 723
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	5 cut(s)	304, 549, 605, 743, 1081
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 49, 81
FaqI	GGGAC	2 cut(s)	659, 943
FatI	CATG	5 cut(s)	300, 545, 601, 739, 1077
FauI	CCCGC	1 cut(s)	681
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	3 cut(s)	86, 294, 810
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	4 cut(s)	407, 434, 470, 932
HapII	CCGG	1 cut(s)	868
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	5 cut(s)	304, 549, 605, 743, 1081
HindIII	AAGCTT	1 cut(s)	1088
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	868
HphI	GGTGA	3 cut(s)	665, 766, 894
Hpy188I	TCNGA	2 cut(s)	45, 465
Hpy188III	TCNNGA	4 cut(s)	497, 608, 788, 800
HpyAV	CCTTC	3 cut(s)	424, 460, 678
HpyCH4III	ACNGT	7 cut(s)	138, 179, 263, 284, 461, 748, 856
HpyCH4IV	ACGT	2 cut(s)	127, 188
HpyCH4V	TGCA	7 cut(s)	150, 163, 300, 721, 727, 762, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 772
HpyF3I	CTNAG	3 cut(s)	196, 275, 815
HpySE526I	ACGT	2 cut(s)	127, 188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	5 cut(s)	304, 549, 605, 743, 1081
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	3 cut(s)	245, 604, 1069
LguI	GCTCTTC	1 cut(s)	43
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	3 cut(s)	86, 294, 810
MaeII	ACGT	2 cut(s)	127, 188
MaeIII	GTNAC	1 cut(s)	900
MalI	GATC	3 cut(s)	247, 606, 1071
MboI	GATC	3 cut(s)	245, 604, 1069
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	7 cut(s)	315, 484, 507, 569, 612, 667, 858
MluNI	TGGCCA	1 cut(s)	407
MnlI	CCTC	6 cut(s)	226, 229, 339, 394, 568, 695
Mox20I	TGGCCA	1 cut(s)	407
Mph1103I	ATGCAT	2 cut(s)	302, 723
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	4 cut(s)	617, 642, 1035, 1099
MslI	CAYNNNNRTG	1 cut(s)	1080
Msp20I	TGGCCA	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	641
MspI	CCGG	1 cut(s)	868
MspR9I	CCNGG	3 cut(s)	777, 869, 935
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	1057
MvaI	CCWGG	2 cut(s)	777, 935
MwoI	GCNNNNNNNGC	2 cut(s)	413, 772
NciI	CCSGG	1 cut(s)	869
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	245, 604, 1069
NlaIII	CATG	5 cut(s)	304, 549, 605, 743, 1081
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	900
NsiI	ATGCAT	2 cut(s)	302, 723
PaqCI	CACCTGC	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	43
PctI	GAATGC	1 cut(s)	1057
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	775, 933
PspGI	CCWGG	2 cut(s)	775, 933
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	931
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	1080
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	4 cut(s)	617, 642, 1035, 1099
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	245, 604, 1069
Sau96I	GGNCC	1 cut(s)	931
ScrFI	CCNGG	3 cut(s)	777, 869, 935
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	1080
SmlI	CTYRAG	2 cut(s)	641, 798
SmoI	CTYRAG	2 cut(s)	641, 798
Sse9I	AATT	7 cut(s)	315, 484, 507, 569, 612, 667, 858
SsiI	CCGC	5 cut(s)	27, 241, 287, 688, 908
SspI	AATATT	2 cut(s)	97, 253
SspMI	CTAG	3 cut(s)	86, 294, 810
StyD4I	CCNGG	3 cut(s)	775, 867, 933
TaaI	ACNGT	7 cut(s)	138, 179, 263, 284, 461, 748, 856
TaiI	ACGT	2 cut(s)	130, 191
TaqI	TCGA	1 cut(s)	225
TasI	AATT	7 cut(s)	315, 484, 507, 569, 612, 667, 858
TatI	WGTACW	1 cut(s)	308
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	4 cut(s)	617, 642, 1035, 1099
Tru9I	TTAA	4 cut(s)	617, 642, 1035, 1099
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	900
Tsp45I	GTSAC	1 cut(s)	900
TspDTI	ATGAA	7 cut(s)	222, 342, 459, 497, 581, 970, 1094
TspRI	CASTG	1 cut(s)	184
Vha464I	CTTAAG	1 cut(s)	641
XapI	RAATTY	3 cut(s)	484, 569, 612
XspI	CTAG	3 cut(s)	86, 294, 810
ZraI	GACGTC	1 cut(s)	189
Zsp2I	ATGCAT	2 cut(s)	302, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.