Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Forward (+)

23969907 .. 23971947

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30260.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTGGCAATCATCATCACCAGCAGCTCTCTCCTACTTGTCTCCTTCTCCACAATATTCATAGTTTCTCTGATCTCCTCTCTCTGCTGCATTCCTTACCTCTCTGCTGCTCCCTCCACAGACACCTTCGTCTTCGGAGGCTGCACGCAGGAGAAGTACGCCCCCAATTCCCCCTACGAGTCCAACATCAACTCCCTCCTCACCTCCCTCGTTAACTCAGCCACTTACTCCTCCTACAACAACTACACCGTTATGGGCTCCAGCCCCCAAGACGTTATCTACGGCCTCTACCAATGCCGCGGCGACCTCTCCATGCCCGACTGCGCCACCTGCGTCGCCCGTGCAGTCAGCCAAGTCGGCAGCTTCTGCCCCTACAACTCCGGCGGTGCCCTTCAGCTGCAGGGCTGCTACATCAAGTACGACAACACCAGCTTTCTCGGCGTCGAGGACAAGACGGTGGTGCTCAAGAAATGCGGTCCGTCTGTTGGGTACGACTCGGATGGAATGAGCCGGAGGGATTCGGTTTTGGCTGCTTTGGTTGGCTCCGGTGGACCTTACAGGGTGGGAGGCTCCGGGGACGTGCAGGGTTTGGCCCAGTGCGTCGGGGATCTGAGCTTCACAGAGTGTCAGGACTGTGTGACGGAGGCAATCGGACGGGTCAAGAGTGAGTGCGGCGGCGCCGTTTACGGTGATATGTTCTTGGCCAAGTGTTACGCCAGGTACTCAACTGCCGGTGCTCATTTCTACTCCAAGATGCATCATGATAAATCTTACAGTGAGGGAGAGAAGACATTTGCAATTATCATTGGATTATTAGCAGGAGTTGCTCTGCTCATCATCTTTCTTACTTTCGTAAGGAAGGTGTTTGGGGGAAATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

295

Amino Acids

31.19

Weight (kDa)

5.91

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	48 - 142	2.2e-21	Salt stress response/antifungal
Stress-antifung	PF01657	189 - 243	3.1e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	338
AccB1I	GGYRCC	2 cut(s)	386, 677
AccII	CGCG	1 cut(s)	300
AciI	CCGC	6 cut(s)	298, 300, 384, 474, 672, 675
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	702
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	2 cut(s)	441, 678
AdeI	CACNNNGTG	1 cut(s)	624
AfaI	GTAC	4 cut(s)	158, 419, 491, 722
AfiI	CCNNNNNNNGG	1 cut(s)	485
AjiI	CACGTC	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	5 cut(s)	27, 363, 397, 432, 615
AluI	AGCT	5 cut(s)	27, 363, 397, 432, 615
Alw21I	GWGCWC	2 cut(s)	465, 739
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	615
AlwNI	CAGNNNCTG	1 cut(s)	366
AoxI	GGCC	3 cut(s)	283, 591, 702
ApeKI	GCWGC	8 cut(s)	24, 87, 107, 141, 360, 397, 405, 530
AspLEI	GCGC	2 cut(s)	326, 680
AspS9I	GGNCC	3 cut(s)	476, 551, 592
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	3 cut(s)	10, 193, 701
AvaII	GGWCC	2 cut(s)	476, 551
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	704
BanI	GGYRCC	2 cut(s)	386, 677
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	2 cut(s)	124, 794
Bbv12I	GWGCWC	2 cut(s)	465, 739
BbvI	GCAGC	8 cut(s)	36, 74, 94, 128, 372, 384, 392, 517
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	2 cut(s)	298, 665
BciT130I	CCWGG	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	398
BfoI	RGCGCY	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	574, 718
Bme18I	GGWCC	2 cut(s)	476, 551
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	3 cut(s)	476, 551, 592
BmiI	GGNNCC	5 cut(s)	259, 388, 544, 571, 679
BmrFI	CCNGG	2 cut(s)	574, 718
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	2 cut(s)	744, 766
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	124, 794
BpmI	CTGGAG	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	574
BsaHI	GRCGYC	2 cut(s)	441, 678
BsaJI	CCNNGG	2 cut(s)	298, 573
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	298, 573
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	231, 602
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	3 cut(s)	67, 188, 220
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	8 cut(s)	36, 74, 94, 128, 372, 384, 392, 517
BsgI	GTGCAG	3 cut(s)	127, 363, 602
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	285, 593, 704
BshNI	GGYRCC	2 cut(s)	386, 677
BsiHKAI	GWGCWC	2 cut(s)	465, 739
BsiSI	CCGG	5 cut(s)	381, 511, 546, 573, 732
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	3 cut(s)	285, 593, 704
Bsp1286I	GDGCHC	4 cut(s)	260, 391, 465, 739
Bsp143I	GATC	2 cut(s)	72, 607
BspACI	CCGC	6 cut(s)	298, 300, 384, 474, 672, 675
BspANI	GGCC	3 cut(s)	285, 593, 704
BspCNI	CTCAG	2 cut(s)	230, 603
BspFNI	CGCG	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	5 cut(s)	259, 388, 544, 571, 679
BspMAI	CTGCAG	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	615
BspT107I	GGYRCC	2 cut(s)	386, 677
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	2 cut(s)	298, 573
BssMI	GATC	2 cut(s)	72, 607
BssNI	GRCGYC	2 cut(s)	441, 678
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	5 cut(s)	250, 457, 635, 689, 776
BstACI	GRCGYC	2 cut(s)	441, 678
BstAPI	GCANNNNNTGC	2 cut(s)	366, 824
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	217, 611
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	326, 680
BstKTI	GATC	2 cut(s)	75, 610
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	72, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	330, 357, 366, 438, 824
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	2 cut(s)	572, 716
BstSFI	CTRYAG	1 cut(s)	398
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	8 cut(s)	36, 74, 94, 128, 372, 384, 392, 517
BstV2I	GAAGAC	2 cut(s)	124, 794
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	285, 593, 704
BtgI	CCRYGG	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	602, 781
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	366
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	2 cut(s)	326, 680
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	3 cut(s)	476, 551, 592
Cfr42I	CCGCGG	1 cut(s)	301
CpoI	CGGWCCG	1 cut(s)	476
CseI	GACGC	3 cut(s)	322, 430, 589
Csp6I	GTAC	4 cut(s)	157, 418, 490, 721
CspI	CGGWCCG	1 cut(s)	476
CviAII	CATG	2 cut(s)	313, 761
CviQI	GTAC	4 cut(s)	157, 418, 490, 721
DdeI	CTNAG	2 cut(s)	217, 611
DinI	GGCGCC	1 cut(s)	679
DpnI	GATC	2 cut(s)	74, 609
DpnII	GATC	2 cut(s)	72, 607
DraIII	CACNNNGTG	1 cut(s)	624
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	476, 551
Eco57I	CTGAAG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	716
EcoT22I	ATGCAT	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	679
EheI	GGCGCC	1 cut(s)	679
FaeI	CATG	2 cut(s)	316, 764
FaiI	YATR	5 cut(s)	62, 254, 314, 695, 762
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	2 cut(s)	312, 760
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	260
GlaI	GCGC	2 cut(s)	325, 679
GsuI	CTGGAG	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	3 cut(s)	285, 593, 704
HapII	CCGG	5 cut(s)	381, 511, 546, 573, 732
HgaI	GACGC	3 cut(s)	322, 430, 589
HhaI	GCGC	2 cut(s)	326, 680
Hin1I	GRCGYC	2 cut(s)	441, 678
Hin1II	CATG	2 cut(s)	316, 764
Hin6I	GCGC	2 cut(s)	324, 678
HinP1I	GCGC	2 cut(s)	324, 678
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	179, 494, 518
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	5 cut(s)	381, 511, 546, 573, 732
HphI	GGTGA	3 cut(s)	10, 193, 701
Hpy166II	GTNNAC	3 cut(s)	214, 551, 685
Hpy188I	TCNGA	5 cut(s)	72, 137, 499, 612, 653
Hpy188III	TCNNGA	4 cut(s)	466, 629, 661, 761
Hpy8I	GTNNAC	3 cut(s)	214, 551, 685
Hpy99I	CGWCG	3 cut(s)	338, 446, 605
HpyAV	CCTTC	4 cut(s)	55, 136, 401, 853
HpyCH4III	ACNGT	5 cut(s)	250, 457, 635, 689, 776
HpyCH4IV	ACGT	2 cut(s)	273, 579
HpyCH4V	TGCA	7 cut(s)	90, 144, 344, 400, 583, 757, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	330, 357, 366, 438, 824
HpyF3I	CTNAG	2 cut(s)	217, 611
HpySE526I	ACGT	2 cut(s)	273, 579
Hsp92I	GRCGYC	2 cut(s)	441, 678
Hsp92II	CATG	2 cut(s)	316, 764
HspAI	GCGC	2 cut(s)	324, 678
KasI	GGCGCC	1 cut(s)	677
KspAI	GTTAAC	1 cut(s)	214
KspI	CCGCGG	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	72, 607
LmnI	GCTCC	4 cut(s)	115, 263, 548, 575
Lsp1109I	GCAGC	8 cut(s)	36, 74, 94, 128, 372, 384, 392, 517
LweI	GCATC	2 cut(s)	744, 766
MaeII	ACGT	2 cut(s)	273, 579
MaeIII	GTNAC	2 cut(s)	637, 710
MalI	GATC	2 cut(s)	74, 609
MboI	GATC	2 cut(s)	72, 607
MboII	GAAGA	2 cut(s)	124, 799
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	4 cut(s)	260, 391, 465, 739
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	2 cut(s)	166, 798
MluNI	TGGCCA	1 cut(s)	704
Mly113I	GGCGCC	1 cut(s)	678
MlyI	GAGTC	2 cut(s)	188, 488
MmeI	TCCRAC	1 cut(s)	207
Mox20I	TGGCCA	1 cut(s)	704
Mph1103I	ATGCAT	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	300, 397
MspI	CCGG	5 cut(s)	381, 511, 546, 573, 732
MspR9I	CCNGG	2 cut(s)	574, 718
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	718
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	5 cut(s)	330, 357, 366, 438, 824
NarI	GGCGCC	1 cut(s)	678
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	2 cut(s)	72, 607
NlaIII	CATG	2 cut(s)	316, 764
NlaIV	GGNNCC	5 cut(s)	259, 388, 544, 571, 679
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	759
PagI	TCATGA	1 cut(s)	760
PaqCI	CACCTGC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	518
PleI	GAGTC	2 cut(s)	187, 488
PluTI	GGCGCC	1 cut(s)	681
PpsI	GAGTC	2 cut(s)	187, 488
Psp6I	CCWGG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	5 cut(s)	259, 388, 544, 571, 679
PspPI	GGNCC	3 cut(s)	476, 551, 592
PstI	CTGCAG	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	4 cut(s)	158, 419, 491, 722
RsaNI	GTAC	4 cut(s)	157, 418, 490, 721
RseI	CAYNNNNRTG	1 cut(s)	251
Rsr2I	CGGWCCG	1 cut(s)	476
RsrII	CGGWCCG	1 cut(s)	476
SacII	CCGCGG	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	72, 607
Sau96I	GGNCC	3 cut(s)	476, 551, 592
SchI	GAGTC	2 cut(s)	188, 488
ScrFI	CCNGG	2 cut(s)	574, 718
SduI	GDGCHC	4 cut(s)	260, 391, 465, 739
SfaNI	GCATC	2 cut(s)	744, 766
SfcI	CTRYAG	1 cut(s)	398
SfoI	GGCGCC	1 cut(s)	679
Sfr303I	CCGCGG	1 cut(s)	301
SgrBI	CCGCGG	1 cut(s)	301
SinI	GGWCC	2 cut(s)	476, 551
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	166, 798
SsiI	CCGC	6 cut(s)	298, 300, 384, 474, 672, 675
SspDI	GGCGCC	1 cut(s)	677
SspI	AATATT	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	572, 716
TaaI	ACNGT	5 cut(s)	250, 457, 635, 689, 776
TaiI	ACGT	2 cut(s)	276, 582
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	166, 798
TauI	GCSGC	4 cut(s)	300, 303, 675, 678
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	602, 781
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	8 cut(s)	24, 87, 107, 141, 360, 397, 405, 530
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	2 cut(s)	468, 656
TspRI	CASTG	2 cut(s)	602, 781
VpaK11BI	GGWCC	2 cut(s)	476, 551
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.