Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Reverse (-)

36221355 .. 36226055

Gene Structure 4701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTGGCAATCACTAGCTCTCTACTCCTCACCCTCTCCACATTCATAGTCTCTTTCTCATCACTCTACATTCCTTCCCGCTCTTCCTCCATAGACCCCTTCGTCTACGGAGGCTGCACACAGGAGAAGTACGCGCCCAACTCACCCTACGAGTCCAACATCAACTCGCTCCTGACCTCCCTGGTTAACTCAGCCACCTACTCCTCCTACAACAACTACACTGTCATGATGGGATCCAGCCCCCAAGACGTCATCTACGATTTCTACCAATGCCGTGGCGACCTCTTCATGCCTGACTGCGCCACCTCCGTCGCCCGTGCAGTCAGCCAAGTAGGGAGCTTCTGCCCCTACAACTCCAGCGGTGCCCTTCAGCTGCAGGGCTGCTACATCAAGTACGACAACACCACCTTTCTTGGCGTGGAGGACAAGACGATGGTGCTCAAAAAATGCGGGTGGTCGGTCGGGTACGATTCGGACGGAATGTGCAGGAGGGATTCAGTGTTGGCTGCTTTGGTTGGCTCCAGTGGGCCGTGTAGTGTAGGAGGGTCCGGGAACGTCCAAGGTTTGGCCCAATGCGTTGGGGATCTGATCTTCACAGAGTGTCAGGACTGTGTGATGGAGGCAATCGGACGGGTGAAAAGTGAATGCGGCGGTGCTGTTTACGGTGATATGTTCTTGGCCAAGTGTTACGCCAGGTACTCAACTGGCGGTGCTCAATTTTACTCCAAGATGCATCATGATAAATCTAGCAATGAGGGTGAGAAGACATTTGCAATTATCATTGGATTATTAGATGGAGTTTCTCTGCTCGTCATCTTGCTAACTTTCGTAAGGAAGGTGTTTGGGGAAAATGGTCAGCATATGGGTAATAAAGCAAAAATGACGCCACAGGAGGCTCGGCGAGCCATAAGGGTTACTATATCGGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

310

Amino Acids

33.48

Weight (kDa)

6.3

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	39 - 134	2.3e-16	Salt stress response/antifungal
Stress-antifung	PF01657	181 - 235	1.6e-07	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	134
AciI	CCGC	6 cut(s)	79, 360, 450, 648, 651, 708
AclWI	GGATC	3 cut(s)	228, 241, 591
AcoI	YGGCCR	1 cut(s)	678
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	2 cut(s)	249, 884
AdeI	CACNNNGTG	1 cut(s)	600
AfaI	GTAC	4 cut(s)	131, 395, 467, 698
AfiI	CCNNNNNNNGG	1 cut(s)	565
AjnI	CCWGG	2 cut(s)	180, 692
AluBI	AGCT	3 cut(s)	18, 339, 373
AluI	AGCT	3 cut(s)	18, 339, 373
Alw21I	GWGCWC	2 cut(s)	441, 715
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	228, 241, 591
AoxI	GGCC	3 cut(s)	527, 567, 678
ApeKI	GCWGC	4 cut(s)	114, 373, 381, 506
AspLEI	GCGC	2 cut(s)	136, 302
AspS9I	GGNCC	4 cut(s)	527, 546, 568, 925
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	5 cut(s)	22, 135, 646, 677, 770
AvaII	GGWCC	2 cut(s)	546, 925
BaeGI	GKGCMC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	680
BamHI	GGATCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	441, 715
BbvI	GCAGC	4 cut(s)	101, 360, 368, 493
BccI	CCATC	4 cut(s)	223, 427, 610, 788
BceAI	ACGGC	2 cut(s)	258, 514
BciT130I	CCWGG	2 cut(s)	182, 694
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	15, 747
BfmI	CTRYAG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	115, 374, 382, 507, 649
BlsI	GCNGC	5 cut(s)	116, 375, 383, 508, 650
Bme1390I	CCNGG	3 cut(s)	182, 550, 694
Bme18I	GGWCC	2 cut(s)	546, 925
BmgT120I	GGNCC	4 cut(s)	527, 546, 568, 925
BmiI	GGNNCC	4 cut(s)	235, 364, 520, 547
BmrFI	CCNGG	3 cut(s)	182, 550, 694
BmsI	GCATC	2 cut(s)	720, 742
BpiI	GAAGAC	1 cut(s)	770
BpmI	CTGGAG	2 cut(s)	340, 505
BpuMI	CCSGG	1 cut(s)	550
BsaHI	GRCGYC	2 cut(s)	249, 884
BsaJI	CCNNGG	3 cut(s)	180, 274, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse1I	ACTGG	3 cut(s)	522, 709, 928
Bse3DI	GCAATG	1 cut(s)	757
BseBI	CCWGG	2 cut(s)	182, 694
BseDI	CCNNGG	3 cut(s)	180, 274, 559
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	3 cut(s)	522, 709, 928
BseRI	GAGGAG	2 cut(s)	17, 193
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	4 cut(s)	101, 360, 368, 493
BsgI	GTGCAG	3 cut(s)	100, 339, 505
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	3 cut(s)	529, 569, 680
BshNI	GGYRCC	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	2 cut(s)	441, 715
BsiSI	CCGG	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmAI	GTCTC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	529, 569, 680
Bsp1286I	GDGCHC	3 cut(s)	367, 441, 715
Bsp143I	GATC	3 cut(s)	233, 583, 588
BspACI	CCGC	6 cut(s)	79, 360, 450, 648, 651, 708
BspANI	GGCC	3 cut(s)	529, 569, 680
BspCNI	CTCAG	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	2 cut(s)	225, 736
BspLI	GGNNCC	4 cut(s)	235, 364, 520, 547
BspMAI	CTGCAG	1 cut(s)	378
BspPI	GGATC	3 cut(s)	228, 241, 591
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	757
BsrI	ACTGG	3 cut(s)	522, 709, 928
BssECI	CCNNGG	3 cut(s)	180, 274, 559
BssMI	GATC	3 cut(s)	233, 583, 588
BssNI	GRCGYC	2 cut(s)	249, 884
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	2 cut(s)	182, 694
Bst4CI	ACNGT	3 cut(s)	223, 611, 665
Bst6I	CTCTTC	2 cut(s)	88, 290
BstACI	GRCGYC	2 cut(s)	249, 884
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	136, 302
BstKTI	GATC	3 cut(s)	236, 586, 591
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	3 cut(s)	233, 583, 588
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	1 cut(s)	902
BstNI	CCWGG	2 cut(s)	182, 694
BstSCI	CCNGG	3 cut(s)	180, 548, 692
BstSFI	CTRYAG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	101, 360, 368, 493
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	2 cut(s)	233, 583
BstXI	CCANNNNNNTGG	2 cut(s)	275, 578
BstYI	RGATCY	2 cut(s)	233, 583
BsuRI	GGCC	3 cut(s)	529, 569, 680
BtgI	CCRYGG	1 cut(s)	274
BtsIMutI	CAGTG	3 cut(s)	219, 504, 529
Cac8I	GCNNGC	1 cut(s)	903
CciI	TCATGA	2 cut(s)	225, 736
CfoI	GCGC	2 cut(s)	136, 302
Cfr13I	GGNCC	4 cut(s)	527, 546, 568, 925
CseI	GACGC	1 cut(s)	892
Csp6I	GTAC	4 cut(s)	130, 394, 466, 697
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	3 cut(s)	226, 289, 737
CviQI	GTAC	4 cut(s)	130, 394, 466, 697
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	3 cut(s)	235, 585, 590
DpnII	GATC	3 cut(s)	233, 583, 588
DraIII	CACNNNGTG	1 cut(s)	600
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	2 cut(s)	88, 290
EarI	CTCTTC	2 cut(s)	88, 290
Eco130I	CCWWGG	1 cut(s)	559
Eco47I	GGWCC	2 cut(s)	546, 925
Eco57I	CTGAAG	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	180, 692
EcoT14I	CCWWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	3 cut(s)	229, 292, 740
FatI	CATG	3 cut(s)	225, 288, 736
FauI	CCCGC	2 cut(s)	86, 443
FauNDI	CATATG	1 cut(s)	861
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	115, 374, 382, 507, 649
Fsp4HI	GCNGC	5 cut(s)	115, 374, 382, 507, 649
FspBI	CTAG	2 cut(s)	15, 747
GlaI	GCGC	2 cut(s)	135, 301
GluI	GCNGC	5 cut(s)	115, 374, 382, 507, 649
GsuI	CTGGAG	2 cut(s)	340, 505
HaeIII	GGCC	3 cut(s)	529, 569, 680
HapII	CCGG	1 cut(s)	549
HgaI	GACGC	1 cut(s)	892
HhaI	GCGC	2 cut(s)	136, 302
Hin1I	GRCGYC	2 cut(s)	249, 884
Hin1II	CATG	3 cut(s)	229, 292, 740
Hin6I	GCGC	2 cut(s)	134, 300
HinP1I	GCGC	2 cut(s)	134, 300
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	152, 470, 494
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	5 cut(s)	22, 135, 646, 677, 770
Hpy166II	GTNNAC	3 cut(s)	106, 187, 661
Hpy188I	TCNGA	3 cut(s)	475, 588, 629
Hpy188III	TCNNGA	4 cut(s)	172, 226, 605, 737
Hpy8I	GTNNAC	3 cut(s)	106, 187, 661
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	4 cut(s)	84, 109, 377, 829
HpyCH4III	ACNGT	3 cut(s)	223, 611, 665
HpyCH4IV	ACGT	2 cut(s)	249, 555
HpyCH4V	TGCA	6 cut(s)	117, 320, 376, 486, 733, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	902
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	2 cut(s)	249, 555
Hsp92I	GRCGYC	2 cut(s)	249, 884
Hsp92II	CATG	3 cut(s)	229, 292, 740
HspAI	GCGC	2 cut(s)	134, 300
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	233, 583, 588
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	174, 336, 524
Lsp1109I	GCAGC	4 cut(s)	101, 360, 368, 493
LweI	GCATC	2 cut(s)	720, 742
MaeI	CTAG	2 cut(s)	15, 747
MaeII	ACGT	2 cut(s)	249, 555
MaeIII	GTNAC	2 cut(s)	686, 913
MalI	GATC	3 cut(s)	235, 585, 590
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	3 cut(s)	233, 583, 588
MboII	GAAGA	4 cut(s)	75, 277, 583, 775
MflI	RGATCY	2 cut(s)	233, 583
MhlI	GDGCHC	3 cut(s)	367, 441, 715
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	2 cut(s)	716, 774
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	180
Mox20I	TGGCCA	1 cut(s)	680
Mph1103I	ATGCAT	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	2 cut(s)	360, 373
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	3 cut(s)	182, 550, 694
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	2 cut(s)	182, 694
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	902
NciI	CCSGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	861
NdeII	GATC	3 cut(s)	233, 583, 588
NlaIII	CATG	3 cut(s)	229, 292, 740
NlaIV	GGNNCC	4 cut(s)	235, 364, 520, 547
NmeAIII	GCCGAG	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	735
PagI	TCATGA	2 cut(s)	225, 736
PciSI	GCTCTTC	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	2 cut(s)	470, 494
PflMI	CCANNNNNTGG	1 cut(s)	565
PfoI	TCCNGGA	1 cut(s)	548
PkrI	GCNGC	5 cut(s)	116, 375, 383, 508, 650
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	180, 692
PspGI	CCWGG	2 cut(s)	180, 692
PspN4I	GGNNCC	4 cut(s)	235, 364, 520, 547
PspPI	GGNCC	4 cut(s)	527, 546, 568, 925
PstI	CTGCAG	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	233, 583
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	4 cut(s)	131, 395, 467, 698
RsaNI	GTAC	4 cut(s)	130, 394, 466, 697
RseI	CAYNNNNRTG	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	5 cut(s)	115, 374, 382, 507, 649
Sau3AI	GATC	3 cut(s)	233, 583, 588
Sau96I	GGNCC	4 cut(s)	527, 546, 568, 925
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	182, 550, 694
SduI	GDGCHC	3 cut(s)	367, 441, 715
SfaNI	GCATC	2 cut(s)	720, 742
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	546, 925
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	716, 774
SsiI	CCGC	6 cut(s)	79, 360, 450, 648, 651, 708
SspMI	CTAG	2 cut(s)	15, 747
StyD4I	CCNGG	3 cut(s)	180, 548, 692
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	3 cut(s)	223, 611, 665
TaiI	ACGT	2 cut(s)	252, 558
TaqII	GACCGA	2 cut(s)	448, 913
TasI	AATT	2 cut(s)	716, 774
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	2 cut(s)	470, 494
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	3 cut(s)	226, 504, 529
TseI	GCWGC	4 cut(s)	114, 373, 381, 506
TspDTI	ATGAA	2 cut(s)	34, 277
TspGWI	ACGGA	3 cut(s)	123, 298, 492
TspRI	CASTG	3 cut(s)	226, 504, 529
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	546, 925
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	15, 747
ZraI	GACGTC	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.