Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Forward (+)

13459297 .. 13460623

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGGCAATCACAAGCTCTCTACTCCTCACCCTCTCCACATTCATAGTTTCTCTCTCATCTCTCTACATTCCTTCCCACTCTTCCTCCACATACACCTTCGTTTACGGAGGCTGCACACAGGAGAAGTACGCGGCCAACTCGCCCTACGAGTCCAACATCAACTTGCTCCTGACCTCCCTGGTTAACTCAGCCACCTACTCCTCTTACAACAACTACACCGTCATGGGATCCAACCCCCAAGACGTCATCTACGGCCTCTACCAATGCCGTGGCGACCTCTCCGTGCCCGACTGTGCCACCTGCGTTGCCCGTGCAGTCAGCCAAGTCGAGACCTTCTGCCCCTACAACTCCGGCTGTGCCCTTCAGCTGCAGGGCTGCTACATCAAGTACGACAATACCACCTTTCTTGGCGTGGAGGACAAGACGGTGGGGCTAAAAAAATGTGGGCCATCGGTCGGGTACGATTCAGACGGAATGAGCCAGAGGGATTCAGTGTTGGCTGCTTTGGTTGGCTCCGGTGGGCCGTACAGGGTGGGAGGGTCCGGGAACGTCCAAGGTTTGGCCCAATGCGTCAGGGATCTGAGCTTCACAGAGTGTCAGGACTGTGTGACGGAAGCAATCGGAAGGGTGAAAAGTGAATGCGGCGGTGCTGTTTACGGTGGTATGTTCTTGGCCAAGTGTTACGCTAGGTACACAATTGGCGGTACTCAATTTTACTCCAAGATGCATCATGATAAATCTAGCAATGAGGGTGAGAAGAAATTTGCAATTATCATTGGATTATTAGCAGGAGTTGCTCTGCTCATTATTTTTCGTACTTTCGTAAGGAAGATGTTTGGGGAAAATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

286

Amino Acids

30.61

Weight (kDa)

7.41

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	39 - 133	1.1e-19	Salt stress response/antifungal
Stress-antifung	PF01657	180 - 233	5.1e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
AatII	GACGTC	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccII	CGCG	1 cut(s)	134
AciI	CCGC	4 cut(s)	134, 645, 648, 705
AclWI	GGATC	3 cut(s)	225, 238, 588
AcoI	YGGCCR	2 cut(s)	135, 675
AcsI	RAATTY	1 cut(s)	764
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	597
AfaI	GTAC	7 cut(s)	131, 392, 464, 530, 695, 709, 820
AfiI	CCNNNNNNNGG	2 cut(s)	458, 562
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	3 cut(s)	18, 370, 588
AluI	AGCT	3 cut(s)	18, 370, 588
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	3 cut(s)	225, 238, 588
AoxI	GGCC	6 cut(s)	135, 256, 449, 524, 564, 675
ApeKI	GCWGC	4 cut(s)	114, 370, 378, 503
ApoI	RAATTY	1 cut(s)	764
AspS9I	GGNCC	4 cut(s)	449, 524, 543, 565
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	3 cut(s)	22, 643, 767
AvaII	GGWCC	1 cut(s)	543
BaeGI	GKGCMC	2 cut(s)	291, 364
BalI	TGGCCA	1 cut(s)	677
BamHI	GGATCC	1 cut(s)	230
BbvI	GCAGC	4 cut(s)	101, 357, 365, 490
BccI	CCATC	1 cut(s)	460
BceAI	ACGGC	3 cut(s)	255, 271, 511
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	690, 744
BfmI	CTRYAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	6 cut(s)	115, 135, 371, 379, 504, 646
BlsI	GCNGC	6 cut(s)	116, 136, 372, 380, 505, 647
Bme1390I	CCNGG	2 cut(s)	182, 547
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	4 cut(s)	449, 524, 543, 565
BmiI	GGNNCC	3 cut(s)	232, 517, 544
BmrFI	CCNGG	2 cut(s)	182, 547
BmsI	GCATC	2 cut(s)	717, 739
BpuMI	CCSGG	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	180, 271, 556
BsaWI	WCCGGW	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 562
Bse3DI	GCAATG	1 cut(s)	754
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	180, 271, 556
BseLI	CCNNNNNNNGG	2 cut(s)	458, 562
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	2 cut(s)	204, 575
BseRI	GAGGAG	2 cut(s)	17, 193
BseSI	GKGCMC	2 cut(s)	291, 364
BseXI	GCAGC	4 cut(s)	101, 357, 365, 490
BsgI	GTGCAG	2 cut(s)	100, 336
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	6 cut(s)	137, 258, 451, 526, 566, 677
BsiEI	CGRYCG	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	354, 519, 546
BslI	CCNNNNNNNGG	2 cut(s)	458, 562
BsmAI	GTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	6 cut(s)	137, 258, 451, 526, 566, 677
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	291, 364
Bsp143I	GATC	2 cut(s)	230, 580
BspACI	CCGC	4 cut(s)	134, 645, 648, 705
BspANI	GGCC	6 cut(s)	137, 258, 451, 526, 566, 677
BspCNI	CTCAG	2 cut(s)	203, 576
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	3 cut(s)	232, 517, 544
BspMAI	CTGCAG	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	225, 238, 588
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	754
BssECI	CCNNGG	3 cut(s)	180, 271, 556
BssMI	GATC	2 cut(s)	230, 580
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	5 cut(s)	223, 296, 430, 608, 662
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstDEI	CTNAG	2 cut(s)	190, 584
BstDSI	CCRYGG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	233, 583
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	230, 580
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	180, 545
BstSFI	CTRYAG	1 cut(s)	371
BstSLI	GKGCMC	2 cut(s)	291, 364
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	101, 357, 365, 490
BstX2I	RGATCY	2 cut(s)	230, 580
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	2 cut(s)	230, 580
BsuRI	GGCC	6 cut(s)	137, 258, 451, 526, 566, 677
BtgI	CCRYGG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	311
CciI	TCATGA	1 cut(s)	733
Cfr13I	GGNCC	4 cut(s)	449, 524, 543, 565
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	7 cut(s)	130, 391, 463, 529, 694, 708, 819
CspCI	CAANNNNNGTGG	4 cut(s)	289, 324, 391, 426
CviAII	CATG	2 cut(s)	226, 734
CviQI	GTAC	7 cut(s)	130, 391, 463, 529, 694, 708, 819
DdeI	CTNAG	2 cut(s)	190, 584
DpnI	GATC	2 cut(s)	232, 582
DpnII	GATC	2 cut(s)	230, 580
DraIII	CACNNNGTG	1 cut(s)	597
EaeI	YGGCCR	2 cut(s)	135, 675
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	229, 737
FaiI	YATR	5 cut(s)	47, 94, 227, 668, 735
FatI	CATG	2 cut(s)	225, 733
Fnu4HI	GCNGC	6 cut(s)	115, 135, 371, 379, 504, 646
Fsp4HI	GCNGC	6 cut(s)	115, 135, 371, 379, 504, 646
FspBI	CTAG	2 cut(s)	690, 744
GluI	GCNGC	6 cut(s)	115, 135, 371, 379, 504, 646
HaeIII	GGCC	6 cut(s)	137, 258, 451, 526, 566, 677
HapII	CCGG	3 cut(s)	354, 519, 546
HgaI	GACGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	229, 737
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	152, 467, 491
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	3 cut(s)	354, 519, 546
HphI	GGTGA	3 cut(s)	22, 643, 767
Hpy166II	GTNNAC	4 cut(s)	106, 187, 658, 696
Hpy188I	TCNGA	3 cut(s)	472, 585, 626
Hpy188III	TCNNGA	4 cut(s)	172, 331, 602, 734
Hpy8I	GTNNAC	4 cut(s)	106, 187, 658, 696
HpyAV	CCTTC	5 cut(s)	84, 109, 346, 374, 621
HpyCH4III	ACNGT	5 cut(s)	223, 296, 430, 608, 662
HpyCH4IV	ACGT	2 cut(s)	246, 552
HpyCH4V	TGCA	5 cut(s)	117, 317, 373, 730, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	2 cut(s)	190, 584
HpySE526I	ACGT	2 cut(s)	246, 552
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	229, 737
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	230, 580
LmnI	GCTCC	2 cut(s)	174, 521
Lsp1109I	GCAGC	4 cut(s)	101, 357, 365, 490
LweI	GCATC	2 cut(s)	717, 739
MaeI	CTAG	2 cut(s)	690, 744
MaeII	ACGT	2 cut(s)	246, 552
MaeIII	GTNAC	2 cut(s)	610, 683
MalI	GATC	2 cut(s)	232, 582
MboI	GATC	2 cut(s)	230, 580
MboII	GAAGA	3 cut(s)	75, 772, 844
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	2 cut(s)	230, 580
MhlI	GDGCHC	2 cut(s)	291, 364
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	4 cut(s)	699, 713, 764, 771
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	180, 258
Mox20I	TGGCCA	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	3 cut(s)	354, 519, 546
MspR9I	CCNGG	2 cut(s)	182, 547
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	797
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	230, 580
NlaIII	CATG	2 cut(s)	229, 737
NlaIV	GGNNCC	3 cut(s)	232, 517, 544
NmuCI	GTSAC	1 cut(s)	610
NsiI	ATGCAT	1 cut(s)	732
PagI	TCATGA	1 cut(s)	733
PaqCI	CACCTGC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	467, 491
PflMI	CCANNNNNTGG	1 cut(s)	562
PfoI	TCCNGGA	1 cut(s)	545
PkrI	GCNGC	6 cut(s)	116, 136, 372, 380, 505, 647
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	232, 517, 544
PspPI	GGNCC	4 cut(s)	449, 524, 543, 565
PstI	CTGCAG	1 cut(s)	375
PsuI	RGATCY	2 cut(s)	230, 580
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	7 cut(s)	131, 392, 464, 530, 695, 709, 820
RsaNI	GTAC	7 cut(s)	130, 391, 463, 529, 694, 708, 819
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	6 cut(s)	115, 135, 371, 379, 504, 646
Sau3AI	GATC	2 cut(s)	230, 580
Sau96I	GGNCC	4 cut(s)	449, 524, 543, 565
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	182, 547
SduI	GDGCHC	2 cut(s)	291, 364
SfaNI	GCATC	2 cut(s)	717, 739
SfcI	CTRYAG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	699, 713, 764, 771
SsiI	CCGC	4 cut(s)	134, 645, 648, 705
SspMI	CTAG	2 cut(s)	690, 744
StyD4I	CCNGG	2 cut(s)	180, 545
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	5 cut(s)	223, 296, 430, 608, 662
TaiI	ACGT	2 cut(s)	249, 555
TaqI	TCGA	1 cut(s)	330
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	4 cut(s)	699, 713, 764, 771
TauI	GCSGC	2 cut(s)	137, 648
TfiI	GAWTC	2 cut(s)	467, 491
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	4 cut(s)	114, 370, 378, 503
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	4 cut(s)	123, 274, 489, 629
TspRI	CASTG	1 cut(s)	501
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	1 cut(s)	764
XspI	CTAG	2 cut(s)	690, 744
ZraI	GACGTC	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.