Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Reverse (-)

1248301 .. 1249954

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G017500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATGGGAACAACTCTTCTCTCCTTCTTTACAGTCCTTGTTTCTCTCTCATGTCTCTACAGTCCTACAAGTTCCTCCTCCACAGACTCCTTTGTGTTTGGAGGCTGCACACAGCAAAAGTATGTACCCGACTCGCCCTACGAGTCGAATCTCAACTCACTCCTCACCTCCCTGGTCAACTCGGCCACCTACTCCTCGTACAACAACTACACCATCATGGGCTCAAGCCCTCAAGACGTCATCTACGGACTCTACCAATGCCGTGGTGACCTGGCCATGCCCGACTGCGCCACGTGTGTTGCTCGTGCCGTGAGCCAAGTAGGGCACCTCTGCTCCTACACCTCCGGTGGCGCTCTTCAGCTAGAAGGATGCTACATCAAGTATGACAACACTAGTTTTTTGGGAGTGGAGGACAAGACTGTGGTGTTGAAGAAATGTGGACCGTCGATTGGGTATGATGCCGATGGAATGGGCCGTAGAGATTCAGTGTTGGCGGCCTTGGTTGGGTCCAGTGGGCCATATAGAGTTGGTGGGTCAGGGGAAGTGCAGGGTTTGGCGCAATGCGTTGGTGATTTAAGCTTATCGGAGTGTCAGGATTGTGTGTCGGAGGCAATCGGACGGGTTAAAAGTGAGTGTGGTGGAGCTGTTTATGGTGATATGTTCTTGGCCAAGTGTTATGCTAGGTACTCAACTGGTGGATCTAATTTTTACTCTAAGGGCCATCATGATAAATCTACCAATGATAGTGAGAAGACATTTGCTGTTATTATTGGACTATTGGCTGGAGTTGCTCTGCTCATCGTTTTTCTTACCTTCATCAGAAAGGTGTTTGGGGGAAATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

283

Amino Acids

29.81

Weight (kDa)

5.61

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	324
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	1 cut(s)	706
AcoI	YGGCCR	3 cut(s)	183, 273, 666
AcuI	CTGAAG	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	3 cut(s)	126, 200, 686
AfiI	CCNNNNNNNGG	2 cut(s)	449, 504
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	430
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	2 cut(s)	171, 270
AluBI	AGCT	3 cut(s)	361, 579, 644
AluI	AGCT	3 cut(s)	361, 579, 644
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	706
AoxI	GGCC	7 cut(s)	183, 273, 472, 495, 515, 666, 718
ApeKI	GCWGC	1 cut(s)	105
AspLEI	GCGC	3 cut(s)	290, 353, 559
AspS9I	GGNCC	5 cut(s)	440, 472, 507, 515, 718
AsuHPI	GGTGA	4 cut(s)	157, 278, 581, 665
AvaII	GGWCC	2 cut(s)	440, 507
BaeGI	GKGCMC	1 cut(s)	327
BalI	TGGCCA	2 cut(s)	275, 668
BanI	GGYRCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	303
BbrPI	CACGTG	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	758
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	3 cut(s)	221, 458, 729
BceAI	ACGGC	3 cut(s)	246, 293, 459
BciT130I	CCWGG	2 cut(s)	173, 272
BcoDI	GTCTC	1 cut(s)	59
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	3 cut(s)	362, 393, 681
BfmI	CTRYAG	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	2 cut(s)	106, 495
BlsI	GCNGC	2 cut(s)	107, 496
Bme1390I	CCNGG	2 cut(s)	173, 272
Bme18I	GGWCC	2 cut(s)	440, 507
BmgT120I	GGNCC	5 cut(s)	440, 472, 507, 515, 718
BmiI	GGNNCC	2 cut(s)	326, 508
BmrFI	CCNGG	2 cut(s)	173, 272
BmsI	GCATC	2 cut(s)	359, 448
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	804
BpuEI	CTTGAG	2 cut(s)	208, 216
BsaAI	YACGTR	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	171, 262, 498
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 504
Bse1I	ACTGG	2 cut(s)	510, 697
Bse3DI	GCAATG	1 cut(s)	566
BseBI	CCWGG	2 cut(s)	173, 272
BseDI	CCNNGG	3 cut(s)	171, 262, 498
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	449, 504
BseMI	GCAATG	1 cut(s)	566
BseNI	ACTGG	2 cut(s)	510, 697
BseRI	GAGGAG	3 cut(s)	67, 152, 184
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	92
BsgI	GTGCAG	2 cut(s)	91, 566
BshFI	GGCC	7 cut(s)	185, 275, 474, 497, 517, 668, 720
BshNI	GGYRCC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	449, 504
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	7 cut(s)	185, 275, 474, 497, 517, 668, 720
Bsp1286I	GDGCHC	2 cut(s)	224, 327
Bsp143I	GATC	1 cut(s)	698
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	7 cut(s)	185, 275, 474, 497, 517, 668, 720
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	326, 508
BspPI	GGATC	1 cut(s)	706
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	510, 697
BssECI	CCNNGG	3 cut(s)	171, 262, 498
BssMI	GATC	1 cut(s)	698
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	173, 272
Bst4CI	ACNGT	4 cut(s)	34, 62, 421, 444
Bst6I	CTCTTC	2 cut(s)	21, 360
BstACI	GRCGYC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	714
BstDSI	CCRYGG	1 cut(s)	262
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	374
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	290, 353, 559
BstKTI	GATC	1 cut(s)	701
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	698
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNI	CCWGG	2 cut(s)	173, 272
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	171, 270
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	758
BstX2I	RGATCY	1 cut(s)	698
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	698
BsuRI	GGCC	7 cut(s)	185, 275, 474, 497, 517, 668, 720
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	492, 517
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	3 cut(s)	290, 353, 559
Cfr13I	GGNCC	5 cut(s)	440, 472, 507, 515, 718
Csp6I	GTAC	3 cut(s)	125, 199, 685
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	4 cut(s)	51, 217, 277, 725
CviQI	GTAC	3 cut(s)	125, 199, 685
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	1 cut(s)	700
DpnII	GATC	1 cut(s)	698
EaeI	YGGCCR	3 cut(s)	183, 273, 666
Eam1104I	CTCTTC	2 cut(s)	21, 360
EarI	CTCTTC	2 cut(s)	21, 360
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	440, 507
Eco57I	CTGAAG	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	171, 270
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	54, 220, 280, 728
FatI	CATG	4 cut(s)	50, 216, 276, 724
Fnu4HI	GCNGC	2 cut(s)	106, 495
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	106, 495
FspBI	CTAG	3 cut(s)	362, 393, 681
GlaI	GCGC	3 cut(s)	289, 352, 558
GluI	GCNGC	2 cut(s)	106, 495
GsuI	CTGGAG	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	7 cut(s)	185, 275, 474, 497, 517, 668, 720
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	3 cut(s)	290, 353, 559
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	54, 220, 280, 728
Hin6I	GCGC	3 cut(s)	288, 351, 557
HinP1I	GCGC	3 cut(s)	288, 351, 557
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	6 cut(s)	86, 131, 143, 148, 249, 482
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	4 cut(s)	157, 278, 581, 665
Hpy166II	GTNNAC	2 cut(s)	178, 440
Hpy188I	TCNGA	4 cut(s)	586, 607, 617, 821
Hpy188III	TCNNGA	3 cut(s)	233, 593, 725
Hpy8I	GTNNAC	2 cut(s)	178, 440
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	34, 359, 823
HpyCH4III	ACNGT	4 cut(s)	34, 62, 421, 444
HpyCH4IV	ACGT	2 cut(s)	237, 293
HpyCH4V	TGCA	2 cut(s)	108, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	1 cut(s)	714
HpySE526I	ACGT	2 cut(s)	237, 293
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	54, 220, 280, 728
HspAI	GCGC	3 cut(s)	288, 351, 557
Kzo9I	GATC	1 cut(s)	698
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	338, 641
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	2 cut(s)	359, 448
MaeI	CTAG	3 cut(s)	362, 393, 681
MaeII	ACGT	2 cut(s)	237, 293
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	1 cut(s)	700
MboI	GATC	1 cut(s)	698
MboII	GAAGA	4 cut(s)	8, 347, 442, 763
MflI	RGATCY	1 cut(s)	698
MhlI	GDGCHC	2 cut(s)	224, 327
MlsI	TGGCCA	2 cut(s)	275, 668
MluCI	AATT	1 cut(s)	703
MluNI	TGGCCA	2 cut(s)	275, 668
MlyI	GAGTC	4 cut(s)	80, 125, 152, 243
MmeI	TCCRAC	1 cut(s)	585
Mox20I	TGGCCA	2 cut(s)	275, 668
MscI	TGGCCA	2 cut(s)	275, 668
MseI	TTAA	2 cut(s)	575, 624
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	2 cut(s)	275, 668
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	173, 272
MvaI	CCWGG	2 cut(s)	173, 272
MwoI	GCNNNNNNNGC	1 cut(s)	788
NdeII	GATC	1 cut(s)	698
NlaIII	CATG	4 cut(s)	54, 220, 280, 728
NlaIV	GGNNCC	2 cut(s)	326, 508
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	148, 482
PkrI	GCNGC	2 cut(s)	107, 496
PleI	GAGTC	4 cut(s)	80, 125, 151, 243
PmaCI	CACGTG	1 cut(s)	294
PmlI	CACGTG	1 cut(s)	294
PpsI	GAGTC	4 cut(s)	80, 125, 151, 243
Ppu21I	YACGTR	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	171, 270
PspCI	CACGTG	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	266
PspGI	CCWGG	2 cut(s)	171, 270
PspN4I	GGNNCC	2 cut(s)	326, 508
PspPI	GGNCC	5 cut(s)	440, 472, 507, 515, 718
PsuI	RGATCY	1 cut(s)	698
RsaI	GTAC	3 cut(s)	126, 200, 686
RsaNI	GTAC	3 cut(s)	125, 199, 685
RseI	CAYNNNNRTG	1 cut(s)	215
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	575, 624
SatI	GCNGC	2 cut(s)	106, 495
Sau3AI	GATC	1 cut(s)	698
Sau96I	GGNCC	5 cut(s)	440, 472, 507, 515, 718
SchI	GAGTC	4 cut(s)	80, 125, 152, 243
ScrFI	CCNGG	2 cut(s)	173, 272
SduI	GDGCHC	2 cut(s)	224, 327
SfaNI	GCATC	2 cut(s)	359, 448
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	440, 507
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	223, 231
SmoI	CTYRAG	2 cut(s)	223, 231
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	1 cut(s)	703
SsiI	CCGC	1 cut(s)	494
SspMI	CTAG	3 cut(s)	362, 393, 681
StyD4I	CCNGG	2 cut(s)	171, 270
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	4 cut(s)	34, 62, 421, 444
TaiI	ACGT	2 cut(s)	240, 296
TaqI	TCGA	2 cut(s)	146, 446
TasI	AATT	1 cut(s)	703
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	148, 482
Tru1I	TTAA	2 cut(s)	575, 624
Tru9I	TTAA	2 cut(s)	575, 624
TscAI	CASTG	2 cut(s)	492, 517
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	805
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	492, 517
VpaK11BI	GGWCC	2 cut(s)	440, 507
XspI	CTAG	3 cut(s)	362, 393, 681
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.