Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Forward (+)

18800109 .. 18801583

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAAATACAACTATTCTCTCCCTCTTCACATTCATCGTTTCTCTGTCATGTCTCTACATTCCATCATGTTCCTCCTCCACAGACGACTTCGTCTTCGTCGGCTGCACGCAGGAAAAGTACGCATCCAACTCGCCCTACGAGTCCAATCTCAACTCACTCCTCACCTCCCTGGTCAACTCAGCCACCTATTCCTCCTACAACAACTACACCATTATGGGCTCAAGCACACAAGACGTAGTTTACGGGCTCTACCAATGCCGCGGTGACCTCGCCATGCCCGAGTGTGCCACCTGCGTCGCGCGTGCAGTGAGCCAAGTTGGACACTTCTGCCCCTACAATTCCGGTGGCGCTCTTCAGCTACAAGGATGCTACATCAAGTATGACAACACTACCTTTTTGGGTGTGGAGGATAAGACTGTGGTGCTGAAGAAATGTGGGCCGTCGATTGGGTATGATGCTGATGGAGTGAGCCGTAGAGATTCAGTGTTGGCTGCCTTGGTGGGGTCTAGCGGACTATACCGGGTGGGTGGTTCAGGGGAGGTACAAGGTTTGGCTCAATGCGTTGGCGATTTAAGCTTGGCGGAGTGTCAGGATTGCATATCGGAGGCAATTGGACGGGTGAAAAGTGAATGTGGTGGCGCAGTTTCTGGTGATATGTTCTTGACCAAGTGCTACGCTAAGTACTCATCAACTGGTGGATCTGATGTTTACACCAAGGTCCATCATCATGATAAATCCATCAATGATGGTGAGAAGACATTTGCTGTGATCATTGGATTATTGGCTGGAGTTGCTCTACTCATTGTTTTTGTTACTTTCATGAGAAGGATTTCTGGGGGCAATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

285

Amino Acids

30.1

Weight (kDa)

5.55

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	36 - 130	1e-20	Salt stress response/antifungal
Stress-antifung	PF01657	177 - 231	8.2e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	302
AccII	CGCG	3 cut(s)	264, 302, 304
AciI	CCGC	4 cut(s)	262, 264, 513, 584
AclWI	GGATC	1 cut(s)	709
AcuI	CTGAAG	2 cut(s)	341, 449
AfaI	GTAC	3 cut(s)	122, 546, 686
AfiI	CCNNNNNNNGG	2 cut(s)	449, 504
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	361, 579
AluI	AGCT	2 cut(s)	361, 579
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	105, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp700I	GAANNNNTTC	1 cut(s)	832
AspLEI	GCGC	3 cut(s)	304, 353, 644
AspS9I	GGNCC	2 cut(s)	440, 721
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	5 cut(s)	157, 278, 634, 665, 764
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	721
BanII	GRGCYC	2 cut(s)	224, 252
BbsI	GAAGAC	2 cut(s)	88, 764
BbvI	GCAGC	2 cut(s)	92, 481
BccI	CCATC	5 cut(s)	73, 458, 732, 743, 749
BceAI	ACGGC	2 cut(s)	427, 459
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	3 cut(s)	106, 262, 495
BlsI	GCNGC	3 cut(s)	107, 263, 496
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	2 cut(s)	173, 524
Bme18I	GGWCC	1 cut(s)	721
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	440, 721
BmrFI	CCNGG	2 cut(s)	173, 524
BmsI	GCATC	3 cut(s)	134, 359, 448
BpiI	GAAGAC	2 cut(s)	88, 764
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	524
BsaJI	CCNNGG	4 cut(s)	171, 262, 498, 717
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 504
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	850
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	4 cut(s)	171, 262, 498, 717
BseGI	GGATG	2 cut(s)	125, 374
BseLI	CCNNNNNNNGG	2 cut(s)	449, 504
BseMI	GCAATG	1 cut(s)	850
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	2 cut(s)	67, 152
BseXI	GCAGC	2 cut(s)	92, 481
BsgI	GTGCAG	2 cut(s)	91, 327
Bsh1236I	CGCG	3 cut(s)	264, 302, 304
BshFI	GGCC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	345, 523
BslI	CCNNNNNNNGG	2 cut(s)	449, 504
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	224, 252
Bsp143I	GATC	2 cut(s)	701, 771
BspACI	CCGC	4 cut(s)	262, 264, 513, 584
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	1 cut(s)	194
BspFNI	CGCG	3 cut(s)	264, 302, 304
BspHI	TCATGA	2 cut(s)	730, 822
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	850
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	4 cut(s)	171, 262, 498, 717
BssMI	GATC	2 cut(s)	701, 771
BssT1I	CCWWGG	2 cut(s)	498, 717
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	32, 360
BstC8I	GCNNGC	2 cut(s)	110, 306
BstDEI	CTNAG	2 cut(s)	181, 681
BstDSI	CCRYGG	1 cut(s)	262
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	125, 374
BstFNI	CGCG	3 cut(s)	264, 302, 304
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	304, 353, 644
BstKTI	GATC	2 cut(s)	704, 774
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	701, 771
BstMWI	GCNNNNNNNGC	2 cut(s)	576, 794
BstNI	CCWGG	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	171, 522
BstUI	CGCG	3 cut(s)	264, 302, 304
BstV1I	GCAGC	2 cut(s)	92, 481
BstV2I	GAAGAC	2 cut(s)	88, 764
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	125, 374
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 492
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	110, 306
CaiI	CAGNNNCTG	1 cut(s)	650
CciI	TCATGA	2 cut(s)	730, 822
CfoI	GCGC	3 cut(s)	304, 353, 644
Cfr13I	GGNCC	2 cut(s)	440, 721
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	121, 545, 685
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	5 cut(s)	51, 69, 277, 731, 823
CviQI	GTAC	3 cut(s)	121, 545, 685
DdeI	CTNAG	2 cut(s)	181, 681
DpnI	GATC	2 cut(s)	703, 773
DpnII	GATC	2 cut(s)	701, 771
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	32, 360
EarI	CTCTTC	2 cut(s)	32, 360
EciI	GGCGGA	1 cut(s)	599
Eco130I	CCWWGG	2 cut(s)	498, 717
Eco24I	GRGCYC	2 cut(s)	224, 252
Eco47I	GGWCC	1 cut(s)	721
Eco57I	CTGAAG	2 cut(s)	341, 449
Eco88I	CYCGRG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	498, 717
EcoT38I	GRGCYC	2 cut(s)	224, 252
ErhI	CCWWGG	2 cut(s)	498, 717
FaeI	CATG	5 cut(s)	54, 72, 280, 734, 826
FatI	CATG	5 cut(s)	50, 68, 276, 730, 822
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	3 cut(s)	106, 262, 495
FokI	GGATG	2 cut(s)	112, 381
FriOI	GRGCYC	2 cut(s)	224, 252
Fsp4HI	GCNGC	3 cut(s)	106, 262, 495
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	3 cut(s)	303, 352, 643
GluI	GCNGC	3 cut(s)	106, 262, 495
GsuI	CTGGAG	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	345, 523
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	3 cut(s)	304, 353, 644
Hin1II	CATG	5 cut(s)	54, 72, 280, 734, 826
Hin6I	GCGC	3 cut(s)	302, 351, 642
HinP1I	GCGC	3 cut(s)	302, 351, 642
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	143, 482
HpaII	CCGG	2 cut(s)	345, 523
HphI	GGTGA	5 cut(s)	157, 278, 634, 665, 764
Hpy166II	GTNNAC	3 cut(s)	178, 244, 712
Hpy188I	TCNGA	2 cut(s)	607, 706
Hpy188III	TCNNGA	4 cut(s)	593, 664, 731, 823
Hpy8I	GTNNAC	3 cut(s)	178, 244, 712
Hpy99I	CGWCG	3 cut(s)	104, 302, 448
HpyAV	CCTTC	1 cut(s)	822
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	108, 308, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	576, 794
HpyF3I	CTNAG	2 cut(s)	181, 681
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	54, 72, 280, 734, 826
HspAI	GCGC	3 cut(s)	302, 351, 642
Ksp22I	TGATCA	1 cut(s)	771
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	701, 771
LguI	GCTCTTC	1 cut(s)	360
Lsp1109I	GCAGC	2 cut(s)	92, 481
LweI	GCATC	3 cut(s)	134, 359, 448
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	266, 814
MalI	GATC	2 cut(s)	703, 773
MboI	GATC	2 cut(s)	701, 771
MboII	GAAGA	5 cut(s)	19, 88, 347, 442, 769
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	2 cut(s)	224, 252
MluCI	AATT	2 cut(s)	340, 612
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	153, 301
MroXI	GAANNNNTTC	1 cut(s)	832
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	2 cut(s)	215, 729
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	345, 523
MspR9I	CCNGG	2 cut(s)	173, 524
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	3 cut(s)	264, 302, 304
MwoI	GCNNNNNNNGC	2 cut(s)	576, 794
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	2 cut(s)	701, 771
NlaIII	CATG	5 cut(s)	54, 72, 280, 734, 826
NmuCI	GTSAC	1 cut(s)	266
PagI	TCATGA	2 cut(s)	730, 822
PaqCI	CACCTGC	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	832
PfeI	GAWTC	1 cut(s)	482
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	107, 263, 496
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	440, 721
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	3 cut(s)	122, 546, 686
RsaNI	GTAC	3 cut(s)	121, 545, 685
RseI	CAYNNNNRTG	2 cut(s)	215, 729
SacII	CCGCGG	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	3 cut(s)	106, 262, 495
Sau3AI	GATC	2 cut(s)	701, 771
Sau96I	GGNCC	2 cut(s)	440, 721
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	173, 524
SduI	GDGCHC	2 cut(s)	224, 252
SfaNI	GCATC	3 cut(s)	134, 359, 448
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	2 cut(s)	215, 729
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	340, 612
SsiI	CCGC	4 cut(s)	262, 264, 513, 584
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	171, 522
StyI	CCWWGG	2 cut(s)	498, 717
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	446
TasI	AATT	2 cut(s)	340, 612
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	315, 492
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	105, 494
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	25, 811
TspRI	CASTG	2 cut(s)	315, 492
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	832
XspI	CTAG	1 cut(s)	510
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.