Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Forward (+)

34523786 .. 34525706

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1271000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAAATACAACTATTCTCTCCCTCTTCACATTCATCGTTTCTCTGTCATGTCTCTACATTCCTTCATGTTCTTCCTCCACAGACGACTTCGTCTTCGTCGGCTGCACGCAGGAAAAGTACGTACCCAACTCGCCCTACGAGTCCAATCTCAACTCACTCCTCACCTCCCTGGTCAACTCAGCCACCTATTCCTCCTACAACAACTACACCATCATGGGCTCAAGCACACAAGACGTAGTTTACGGGCTCTACCAATGCCGCGGCGACCTCGCCATGCCCGACTGTGCCACCTGCGTCGCGCGTGCAGTGAGCGAAGTTGGACACTTCTGCCCCTACACTTCCGGTGGCGCTCTTCAGCTACAAGGATGCTACATCAAGTATGACAACACTACCTTTTTGGGAGTGGAGGATAAGACTGTGGTGCTGAAGAAATGTGGGCCGTCGATTGGGTATGATGCTGATGGAATGAGCCGTAGAGATTCTGTGTTGGCTGCCTTGGTGGGGTCTAGCGGACCATACCGGGTGGGTGGTTCAGGGAAGGTACAAGGTTTGGCTCAATGCGTCGGCGATTTAAGCTTGGCGGAGTGTCAGGATTGCATATCGGAGGCAATCGGACAGGTGAAAAGTGAATGTGGTGGCGCAGTTTATGGTGATATGTTCTTGACCAAGTGCTACGCTAGGTACTCATCAACTGGTGGATCTGATGTTTACACCAAGGTCCATCATCATGATAAATCCACCAATGATGGTGAGAAGACATTTGCTGTGATAATTGGATTATTGGCTGGAGTTGCTCTACTCATTGTTTTTCTTACTTTCATGAGAAGGATTTTTGGGAACAATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

285

Amino Acids

30.32

Weight (kDa)

5.54

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	36 - 130	6e-21	Salt stress response/antifungal
Stress-antifung	PF01657	177 - 231	2.8e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	302
AccII	CGCG	3 cut(s)	264, 302, 304
AciI	CCGC	4 cut(s)	262, 264, 513, 584
AclWI	GGATC	1 cut(s)	709
AcuI	CTGAAG	2 cut(s)	341, 449
AfaI	GTAC	4 cut(s)	122, 126, 546, 686
AfiI	CCNNNNNNNGG	2 cut(s)	449, 504
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	361, 579
AluI	AGCT	2 cut(s)	361, 579
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	709
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	105, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	3 cut(s)	304, 353, 644
AspS9I	GGNCC	3 cut(s)	440, 515, 721
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	4 cut(s)	157, 634, 665, 764
AvaII	GGWCC	2 cut(s)	515, 721
BanII	GRGCYC	2 cut(s)	224, 252
BbsI	GAAGAC	2 cut(s)	88, 764
BbvI	GCAGC	2 cut(s)	92, 481
BccI	CCATC	4 cut(s)	221, 458, 732, 743
BceAI	ACGGC	2 cut(s)	427, 459
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	510, 681
BfoI	RGCGCY	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	4 cut(s)	106, 262, 265, 495
BlsI	GCNGC	4 cut(s)	107, 263, 266, 496
Bme1390I	CCNGG	2 cut(s)	173, 524
Bme18I	GGWCC	2 cut(s)	515, 721
BmgT120I	GGNCC	3 cut(s)	440, 515, 721
BmrFI	CCNGG	2 cut(s)	173, 524
BmsI	GCATC	2 cut(s)	359, 448
BpiI	GAAGAC	2 cut(s)	88, 764
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	124
BsaJI	CCNNGG	4 cut(s)	171, 262, 498, 717
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 504
Bse1I	ACTGG	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	4 cut(s)	171, 262, 498, 717
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	449, 504
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	92, 481
BsgI	GTGCAG	2 cut(s)	91, 327
Bsh1236I	CGCG	3 cut(s)	264, 302, 304
BshFI	GGCC	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	345, 523
BslI	CCNNNNNNNGG	2 cut(s)	449, 504
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	224, 252
Bsp143I	GATC	1 cut(s)	701
BspACI	CCGC	4 cut(s)	262, 264, 513, 584
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	1 cut(s)	194
BspFNI	CGCG	3 cut(s)	264, 302, 304
BspHI	TCATGA	2 cut(s)	730, 822
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	4 cut(s)	171, 262, 498, 717
BssMI	GATC	1 cut(s)	701
BssT1I	CCWWGG	2 cut(s)	498, 717
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	287, 421
Bst6I	CTCTTC	2 cut(s)	32, 360
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	110, 306
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	3 cut(s)	264, 302, 304
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	304, 353, 644
BstKTI	GATC	1 cut(s)	704
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	701
BstMWI	GCNNNNNNNGC	2 cut(s)	576, 794
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	171, 522
BstSNI	TACGTA	1 cut(s)	124
BstUI	CGCG	3 cut(s)	264, 302, 304
BstV1I	GCAGC	2 cut(s)	92, 481
BstV2I	GAAGAC	2 cut(s)	88, 764
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	1 cut(s)	442
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	110, 306
CciI	TCATGA	2 cut(s)	730, 822
CfoI	GCGC	3 cut(s)	304, 353, 644
Cfr13I	GGNCC	3 cut(s)	440, 515, 721
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	2 cut(s)	286, 553
Csp6I	GTAC	4 cut(s)	121, 125, 545, 685
CviAII	CATG	6 cut(s)	51, 69, 217, 277, 731, 823
CviQI	GTAC	4 cut(s)	121, 125, 545, 685
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	1 cut(s)	703
DpnII	GATC	1 cut(s)	701
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	32, 360
EarI	CTCTTC	2 cut(s)	32, 360
EciI	GGCGGA	1 cut(s)	599
Eco105I	TACGTA	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	498, 717
Eco24I	GRGCYC	2 cut(s)	224, 252
Eco47I	GGWCC	2 cut(s)	515, 721
Eco57I	CTGAAG	2 cut(s)	341, 449
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	498, 717
EcoT38I	GRGCYC	2 cut(s)	224, 252
ErhI	CCWWGG	2 cut(s)	498, 717
FaeI	CATG	6 cut(s)	54, 72, 220, 280, 734, 826
FatI	CATG	6 cut(s)	50, 68, 216, 276, 730, 822
Fnu4HI	GCNGC	4 cut(s)	106, 262, 265, 495
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	2 cut(s)	224, 252
Fsp4HI	GCNGC	4 cut(s)	106, 262, 265, 495
FspBI	CTAG	2 cut(s)	510, 681
GlaI	GCGC	3 cut(s)	303, 352, 643
GluI	GCNGC	4 cut(s)	106, 262, 265, 495
GsuI	CTGGAG	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	345, 523
HgaI	GACGC	2 cut(s)	286, 553
HhaI	GCGC	3 cut(s)	304, 353, 644
Hin1II	CATG	6 cut(s)	54, 72, 220, 280, 734, 826
Hin6I	GCGC	3 cut(s)	302, 351, 642
HinP1I	GCGC	3 cut(s)	302, 351, 642
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	143, 482
HpaII	CCGG	2 cut(s)	345, 523
HphI	GGTGA	4 cut(s)	157, 634, 665, 764
Hpy166II	GTNNAC	3 cut(s)	178, 244, 712
Hpy188I	TCNGA	3 cut(s)	607, 617, 706
Hpy188III	TCNNGA	4 cut(s)	593, 664, 731, 823
Hpy8I	GTNNAC	3 cut(s)	178, 244, 712
Hpy99I	CGWCG	4 cut(s)	104, 302, 448, 569
HpyAV	CCTTC	3 cut(s)	75, 535, 822
HpyCH4III	ACNGT	2 cut(s)	287, 421
HpyCH4IV	ACGT	2 cut(s)	123, 237
HpyCH4V	TGCA	3 cut(s)	108, 308, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	576, 794
HpyF3I	CTNAG	1 cut(s)	181
HpySE526I	ACGT	2 cut(s)	123, 237
Hsp92II	CATG	6 cut(s)	54, 72, 220, 280, 734, 826
HspAI	GCGC	3 cut(s)	302, 351, 642
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	701
LguI	GCTCTTC	1 cut(s)	360
Lsp1109I	GCAGC	2 cut(s)	92, 481
LweI	GCATC	2 cut(s)	359, 448
MaeI	CTAG	2 cut(s)	510, 681
MaeII	ACGT	2 cut(s)	123, 237
MalI	GATC	1 cut(s)	703
MboI	GATC	1 cut(s)	701
MboII	GAAGA	6 cut(s)	19, 66, 88, 347, 442, 769
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	2 cut(s)	224, 252
MluCI	AATT	1 cut(s)	774
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	8 cut(s)	35, 88, 173, 178, 205, 281, 403, 601
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	2 cut(s)	215, 729
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	345, 523
MspR9I	CCNGG	2 cut(s)	173, 524
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	3 cut(s)	264, 302, 304
MwoI	GCNNNNNNNGC	2 cut(s)	576, 794
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	1 cut(s)	701
NlaIII	CATG	6 cut(s)	54, 72, 220, 280, 734, 826
PagI	TCATGA	2 cut(s)	730, 822
PaqCI	CACCTGC	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	482
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	107, 263, 266, 496
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	3 cut(s)	440, 515, 721
PsuI	RGATCY	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	4 cut(s)	122, 126, 546, 686
RsaNI	GTAC	4 cut(s)	121, 125, 545, 685
RseI	CAYNNNNRTG	2 cut(s)	215, 729
SacII	CCGCGG	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	4 cut(s)	106, 262, 265, 495
Sau3AI	GATC	1 cut(s)	701
Sau96I	GGNCC	3 cut(s)	440, 515, 721
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	173, 524
SduI	GDGCHC	2 cut(s)	224, 252
SfaNI	GCATC	2 cut(s)	359, 448
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	515, 721
SmiMI	CAYNNNNRTG	2 cut(s)	215, 729
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SnaBI	TACGTA	1 cut(s)	124
Sse9I	AATT	1 cut(s)	774
SsiI	CCGC	4 cut(s)	262, 264, 513, 584
SspMI	CTAG	2 cut(s)	510, 681
StyD4I	CCNGG	2 cut(s)	171, 522
StyI	CCWWGG	2 cut(s)	498, 717
TaaI	ACNGT	2 cut(s)	287, 421
TaiI	ACGT	2 cut(s)	126, 240
TaqI	TCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	774
TauI	GCSGC	2 cut(s)	264, 267
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	2 cut(s)	105, 494
TspDTI	ATGAA	3 cut(s)	25, 57, 811
TspRI	CASTG	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	515, 721
XspI	CTAG	2 cut(s)	510, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.