Rw3G026180

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008291
Physical Location & Seq
Reverse (-)
35626379 .. 35629347
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026180.1

Sequence Viewer

Length: 888 bp
ATGTTCATCAAAGAAGGAACAACACCAAAAATGGTGGCAATCACAAGCTCTCTACTCCTCTCCCTCTCTACATTCATAGTTTCTCTCTCATCTCTCTACATTCCTTCCCGCTCTTCCTCCACAGACACCTTCGTCTACGGAGGCTGCACACAGGAGAAGTACGCGCCGAACTCGCCCTACGAGTCCAACATCAACTCGCTCCTGACCTCCCTGGTTAATTCAGCCACCTACTCCTCCTACAACAACTACACCGTCATGGGATCGAGCCCCCAAGACGTCATCTACGGCCTCTACCAATGCCGTGGCGACCTCTCCATGCCCGACTGCGCCACCTGCGTCGCCCGTGCAGTCAGCCAAGTCGGGAGCTTCTGCCCCTACAACTCCGGCGGTGCCCTTCAGCTGCAGGGTTGCTACATCAAGTACGATAACACCACCTTTCTTGGCGCGGAGGACAAGACGGTGGTGCTCAAAAAATGCGGGCCGTCGGTCGGGTACGATTCGAACGGAATGAGCCGGAGGGATTCAGTGTTGGCTGCTCTGGTTGGCTCCGGTGGGCCGTACAGGGTGGGAGGGTCCGGGGATGTCCAAGGTTTGGCCCAATGCGTCGGGGATCTGAGCTTCGCAGAGTGTCAGGACTGTCTGACGGAGGCAATCGGACGGGTGAAAAGTGAATGCGGCGGTGCTGATTACGGTGATATGTTCTTGGCCAAGTGTTATGCCAGGTACTCAACTGGCGGTGCTCAATTTTACTCCAAGATGCATCATGATAAATCTAGCAATGAGGGTGAGAAGACATTTGCAATTATCATTGGATTAATAGCAGGAGTTGCTCTGCTCATCATCTTTCTAACTTTCATAAGGAAGGTGTTTGGGGGAAATGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

295

Amino Acids

31.36

Weight (kDa)

6.7

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 49 - 143 2e-21 Salt stress response/antifungal
Stress-antifung PF01657 190 - 244 2.7e-09 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 592
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 135
AccII CGCG 2 cut(s) 164, 446
AciI CCGC 7 cut(s) 109, 387, 446, 477, 675, 678, 735
AclWI GGATC 2 cut(s) 268, 618
AcoI YGGCCR 1 cut(s) 705
AcuI CTGAAG 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 5 cut(s) 161, 422, 494, 560, 725
AfiI CCNNNNNNNGG 2 cut(s) 488, 592
AjnI CCWGG 2 cut(s) 210, 719
AluBI AGCT 4 cut(s) 48, 366, 400, 618
AluI AGCT 4 cut(s) 48, 366, 400, 618
Alw21I GWGCWC 2 cut(s) 468, 742
AlwI GGATC 2 cut(s) 268, 618
AoxI GGCC 5 cut(s) 286, 479, 554, 594, 705
ApeKI GCWGC 3 cut(s) 144, 400, 533
AseI ATTAAT 1 cut(s) 815
AspLEI GCGC 3 cut(s) 166, 329, 446
AspS9I GGNCC 4 cut(s) 479, 554, 573, 595
AsuC2I CCSGG 1 cut(s) 577
AsuHPI GGTGA 3 cut(s) 673, 704, 797
AsuII TTCGAA 1 cut(s) 500
AvaII GGWCC 1 cut(s) 573
BaeGI GKGCMC 1 cut(s) 394
BalI TGGCCA 1 cut(s) 707
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 2 cut(s) 468, 742
BbvI GCAGC 3 cut(s) 131, 387, 520
BceAI ACGGC 4 cut(s) 285, 301, 466, 541
BciT130I CCWGG 2 cut(s) 212, 721
BcnI CCSGG 1 cut(s) 577
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 4 cut(s) 145, 401, 534, 676
BlsI GCNGC 4 cut(s) 146, 402, 535, 677
Bme1390I CCNGG 3 cut(s) 212, 577, 721
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 4 cut(s) 479, 554, 573, 595
BmiI GGNNCC 3 cut(s) 391, 547, 574
BmrFI CCNGG 3 cut(s) 212, 577, 721
BmsI GCATC 2 cut(s) 747, 769
BpiI GAAGAC 1 cut(s) 797
Bpu14I TTCGAA 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 210, 301, 576, 586
BsaWI WCCGGW 1 cut(s) 548
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 592
Bse1I ACTGG 1 cut(s) 736
Bse3DI GCAATG 1 cut(s) 784
BseBI CCWGG 2 cut(s) 212, 721
BseDI CCNNGG 4 cut(s) 210, 301, 576, 586
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 2 cut(s) 488, 592
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 2 cut(s) 47, 223
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 3 cut(s) 131, 387, 520
BsgI GTGCAG 2 cut(s) 130, 366
Bsh1236I CGCG 2 cut(s) 164, 446
Bsh1285I CGRYCG 1 cut(s) 489
BshFI GGCC 5 cut(s) 288, 481, 556, 596, 707
BshNI GGYRCC 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 489
BsiHKAI GWGCWC 2 cut(s) 468, 742
BsiSI CCGG 4 cut(s) 384, 514, 549, 576
BslI CCNNNNNNNGG 2 cut(s) 488, 592
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 5 cut(s) 288, 481, 556, 596, 707
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 4 cut(s) 269, 394, 468, 742
Bsp143I GATC 2 cut(s) 260, 610
BspACI CCGC 7 cut(s) 109, 387, 446, 477, 675, 678, 735
BspANI GGCC 5 cut(s) 288, 481, 556, 596, 707
BspCNI CTCAG 1 cut(s) 606
BspFNI CGCG 2 cut(s) 164, 446
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 3 cut(s) 391, 547, 574
BspMAI CTGCAG 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 2 cut(s) 268, 618
BspQI GCTCTTC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 1 cut(s) 736
BssECI CCNNGG 4 cut(s) 210, 301, 576, 586
BssMI GATC 2 cut(s) 260, 610
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 586
Bst2UI CCWGG 2 cut(s) 212, 721
Bst4CI ACNGT 4 cut(s) 253, 460, 638, 692
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 827
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 1 cut(s) 614
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 586
BstFNI CGCG 2 cut(s) 164, 446
BstHHI GCGC 3 cut(s) 166, 329, 446
BstKTI GATC 2 cut(s) 263, 613
BstMBI GATC 2 cut(s) 260, 610
BstMCI CGRYCG 1 cut(s) 489
BstMWI GCNNNNNNNGC 3 cut(s) 172, 333, 827
BstNI CCWGG 2 cut(s) 212, 721
BstSCI CCNGG 3 cut(s) 210, 575, 719
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 394
BstUI CGCG 2 cut(s) 164, 446
BstV1I GCAGC 3 cut(s) 131, 387, 520
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 1 cut(s) 610
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 5 cut(s) 288, 481, 556, 596, 707
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 1 cut(s) 479
CciI TCATGA 1 cut(s) 763
CfoI GCGC 3 cut(s) 166, 329, 446
Cfr13I GGNCC 4 cut(s) 479, 554, 573, 595
CseI GACGC 2 cut(s) 325, 592
Csp6I GTAC 5 cut(s) 160, 421, 493, 559, 724
CspCI CAANNNNNGTGG 4 cut(s) 15, 50, 421, 456
CviAII CATG 3 cut(s) 256, 316, 764
CviQI GTAC 5 cut(s) 160, 421, 493, 559, 724
DdeI CTNAG 1 cut(s) 614
DpnI GATC 2 cut(s) 262, 612
DpnII GATC 2 cut(s) 260, 610
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 210, 719
EcoT14I CCWWGG 1 cut(s) 586
EcoT22I ATGCAT 1 cut(s) 762
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 586
FaeI CATG 3 cut(s) 259, 319, 767
FaiI YATR 7 cut(s) 77, 257, 317, 698, 717, 765, 857
FatI CATG 3 cut(s) 255, 315, 763
FauI CCCGC 2 cut(s) 116, 470
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 145, 401, 534, 676
FokI GGATG 1 cut(s) 593
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 145, 401, 534, 676
FspBI CTAG 1 cut(s) 774
GlaI GCGC 3 cut(s) 165, 328, 445
GluI GCNGC 4 cut(s) 145, 401, 534, 676
HaeIII GGCC 5 cut(s) 288, 481, 556, 596, 707
HapII CCGG 4 cut(s) 384, 514, 549, 576
HgaI GACGC 2 cut(s) 325, 592
HhaI GCGC 3 cut(s) 166, 329, 446
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 3 cut(s) 259, 319, 767
Hin6I GCGC 3 cut(s) 164, 327, 444
HinP1I GCGC 3 cut(s) 164, 327, 444
HinfI GANTC 3 cut(s) 182, 497, 521
HpaII CCGG 4 cut(s) 384, 514, 549, 576
HphI GGTGA 3 cut(s) 673, 704, 797
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 615, 642, 656
Hpy188III TCNNGA 4 cut(s) 202, 361, 632, 764
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 3 cut(s) 341, 487, 608
HpyAV CCTTC 5 cut(s) 8, 114, 139, 404, 856
HpyCH4III ACNGT 4 cut(s) 253, 460, 638, 692
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 5 cut(s) 147, 347, 403, 760, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 333, 827
HpyF3I CTNAG 1 cut(s) 614
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 3 cut(s) 259, 319, 767
HspAI GCGC 3 cut(s) 164, 327, 444
Kzo9I GATC 2 cut(s) 260, 610
LguI GCTCTTC 1 cut(s) 118
LmnI GCTCC 3 cut(s) 204, 363, 551
Lsp1109I GCAGC 3 cut(s) 131, 387, 520
LweI GCATC 2 cut(s) 747, 769
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 276
MalI GATC 2 cut(s) 262, 612
MbiI CCGCTC 1 cut(s) 111
MboI GATC 2 cut(s) 260, 610
MboII GAAGA 2 cut(s) 105, 802
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 4 cut(s) 269, 394, 468, 742
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 3 cut(s) 217, 743, 801
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 210
Mox20I TGGCCA 1 cut(s) 707
Mph1103I ATGCAT 1 cut(s) 762
MscI TGGCCA 1 cut(s) 707
MseI TTAA 2 cut(s) 216, 815
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 400
MspI CCGG 4 cut(s) 384, 514, 549, 576
MspR9I CCNGG 3 cut(s) 212, 577, 721
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 2 cut(s) 212, 721
MvnI CGCG 2 cut(s) 164, 446
MwoI GCNNNNNNNGC 3 cut(s) 172, 333, 827
NciI CCSGG 1 cut(s) 577
NdeII GATC 2 cut(s) 260, 610
NlaIII CATG 3 cut(s) 259, 319, 767
NlaIV GGNNCC 3 cut(s) 391, 547, 574
NsiI ATGCAT 1 cut(s) 762
NspV TTCGAA 1 cut(s) 500
PagI TCATGA 1 cut(s) 763
PaqCI CACCTGC 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 118
PctI GAATGC 1 cut(s) 677
PfeI GAWTC 2 cut(s) 497, 521
PflMI CCANNNNNTGG 1 cut(s) 592
PkrI GCNGC 4 cut(s) 146, 402, 535, 677
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 815
Psp6I CCWGG 2 cut(s) 210, 719
PspGI CCWGG 2 cut(s) 210, 719
PspN4I GGNNCC 3 cut(s) 391, 547, 574
PspPI GGNCC 4 cut(s) 479, 554, 573, 595
PsrI GAACNNNNNNTAC 2 cut(s) 161, 193
PstI CTGCAG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 5 cut(s) 161, 422, 494, 560, 725
RsaNI GTAC 5 cut(s) 160, 421, 493, 559, 724
RseI CAYNNNNRTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 216, 815
SatI GCNGC 4 cut(s) 145, 401, 534, 676
Sau3AI GATC 2 cut(s) 260, 610
Sau96I GGNCC 4 cut(s) 479, 554, 573, 595
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 3 cut(s) 212, 577, 721
SduI GDGCHC 4 cut(s) 269, 394, 468, 742
SfaNI GCATC 2 cut(s) 747, 769
SfcI CTRYAG 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 3 cut(s) 217, 743, 801
SsiI CCGC 7 cut(s) 109, 387, 446, 477, 675, 678, 735
SspMI CTAG 1 cut(s) 774
StyD4I CCNGG 3 cut(s) 210, 575, 719
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 4 cut(s) 253, 460, 638, 692
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 263, 500
TaqII GACCGA 1 cut(s) 475
TasI AATT 3 cut(s) 217, 743, 801
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 2 cut(s) 497, 521
Tru1I TTAA 2 cut(s) 216, 815
Tru9I TTAA 2 cut(s) 216, 815
TscAI CASTG 1 cut(s) 531
TseI GCWGC 3 cut(s) 144, 400, 533
TspDTI ATGAA 2 cut(s) 64, 844
TspGWI ACGGA 3 cut(s) 153, 519, 659
TspRI CASTG 1 cut(s) 531
Van91I CCANNNNNTGG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 573
VspI ATTAAT 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 774
ZraI GACGTC 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.