Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008291

Physical Location & Seq

Genomic Coordinates Reverse (-)

36547568 .. 36549333

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTGGCAATCACAAGCTCTCTACTCCTCTCCCTCTCTACATTCATAGTTTCTCTCTCATCTCTCTACATTCCTTCCCGCTCTTCCTCCACAGACACCTTCGTCTACGGAGGCTGCACACAGGAGAAGTACGCGCCGAACTCGCCCTACGAGTCCAACATCAACTCGCTCCTGACCTCCCTGGTTAATTCAGCCACCTACTCCTCCTACAACAACTACACCGTCATGGGATCCAGCCCCCAAGACGTCATCTACGGCCTCTACCAATGCCGTGGCGACCTCTCCATGCCCGACTGCGCCACCTGCGTCGCCCGTGCAGTCAGCCAAGTCGGGAGCTTCTGCCCCTACAACTCCGGCGGTGCCCTTCAGCTGCAGGGTTGCTACATCAAGTACGATAACACCACCTTTCTTGGCGCGGAGGACAAGACGGTGGTGCTCAAAAAATGCGGGCCGTCGGTCGGGTACGATTCGAACGGAATGAGCCGGAGGGATTCAGTGTTGGCTGCTCTGGTTGGCTCCGGTGGGCCGTACAGGGTGGGAGGGTCCGGGGATGTCCAAGGTTTGGCCCAATGCGTCGGGGATCTGAGCTTCGCAGAGTGTCAGGACTGTCTGACGGAGGCAATCGGACGGGTGAAAAGTGAATGCGGCGGTGCTGATTACGGTGATATGTTCTTGGCCAAGTGTTACGCCAGGTACTCAACTGGCGGTGCTCAATTTTACTCCAAGATGCATCATGGTAATTATCAATTTAACCTACTCTTATTTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

257

Amino Acids

27.38

Weight (kDa)

5.32

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	39 - 133	1.5e-21	Salt stress response/antifungal
Stress-antifung	PF01657	179 - 234	2.1e-09	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37660 AT5G37660
fragaria_vesca	FvH4_1g30260 FvH4_1g30260
malus_domestica	MD09G1271000.v1.1 MD17G1269100.v1.1
prunus_persica	Prupe.3G017500_v2.0.a1
pyrus_communis	pycom09g18200 pycom17g26780
rosa_chinensis	RchiOBHm_Chr3g0491121 RchiOBHm_Chr3g0491131 RchiOBHm_Chr3g0491141
rosa_laevigata	RLG00000022860 RLG00000022861
rosa_multiflora	Rmu_sc0005038.1_g000032
rosa_roxburghii	Rroxscaffold_6G00393130
rosa_rugosa	Rorug03G0246400
rosa_samantha	Rh3AG296600 Rh3AG296700 Rh3BG332700 Rh3CG329900 Rh3DG330400
rosa_wichuraiana	Rw3G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccBSI	CCGCTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	2 cut(s)	134, 416
AciI	CCGC	7 cut(s)	79, 357, 416, 447, 645, 648, 705
AclWI	GGATC	3 cut(s)	225, 238, 588
AcoI	YGGCCR	1 cut(s)	675
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	5 cut(s)	131, 392, 464, 530, 695
AfiI	CCNNNNNNNGG	2 cut(s)	458, 562
AjnI	CCWGG	2 cut(s)	180, 689
AluBI	AGCT	4 cut(s)	18, 336, 370, 588
AluI	AGCT	4 cut(s)	18, 336, 370, 588
Alw21I	GWGCWC	2 cut(s)	438, 712
AlwI	GGATC	3 cut(s)	225, 238, 588
AoxI	GGCC	5 cut(s)	256, 449, 524, 564, 675
ApeKI	GCWGC	3 cut(s)	114, 370, 503
AspLEI	GCGC	3 cut(s)	136, 299, 416
AspS9I	GGNCC	4 cut(s)	449, 524, 543, 565
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	643, 674
AsuII	TTCGAA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	677
BamHI	GGATCC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	359
Bbv12I	GWGCWC	2 cut(s)	438, 712
BbvI	GCAGC	3 cut(s)	101, 357, 490
BceAI	ACGGC	4 cut(s)	255, 271, 436, 511
BciT130I	CCWGG	2 cut(s)	182, 691
BcnI	CCSGG	1 cut(s)	547
BfmI	CTRYAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	4 cut(s)	115, 371, 504, 646
BlsI	GCNGC	4 cut(s)	116, 372, 505, 647
Bme1390I	CCNGG	3 cut(s)	182, 547, 691
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	4 cut(s)	449, 524, 543, 565
BmiI	GGNNCC	4 cut(s)	232, 361, 517, 544
BmrFI	CCNGG	3 cut(s)	182, 547, 691
BmsI	GCATC	2 cut(s)	717, 739
Bpu14I	TTCGAA	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	180, 271, 546, 556
BsaWI	WCCGGW	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 562
Bse1I	ACTGG	1 cut(s)	706
BseBI	CCWGG	2 cut(s)	182, 691
BseDI	CCNNGG	4 cut(s)	180, 271, 546, 556
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	2 cut(s)	458, 562
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	706
BseRI	GAGGAG	2 cut(s)	17, 193
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	101, 357, 490
BsgI	GTGCAG	2 cut(s)	100, 336
Bsh1236I	CGCG	2 cut(s)	134, 416
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	5 cut(s)	258, 451, 526, 566, 677
BshNI	GGYRCC	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	438, 712
BsiSI	CCGG	4 cut(s)	354, 484, 519, 546
BslI	CCNNNNNNNGG	2 cut(s)	458, 562
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	5 cut(s)	258, 451, 526, 566, 677
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	3 cut(s)	364, 438, 712
Bsp143I	GATC	2 cut(s)	230, 580
BspACI	CCGC	7 cut(s)	79, 357, 416, 447, 645, 648, 705
BspANI	GGCC	5 cut(s)	258, 451, 526, 566, 677
BspCNI	CTCAG	1 cut(s)	576
BspFNI	CGCG	2 cut(s)	134, 416
BspLI	GGNNCC	4 cut(s)	232, 361, 517, 544
BspMAI	CTGCAG	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	225, 238, 588
BspQI	GCTCTTC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	706
BssECI	CCNNGG	4 cut(s)	180, 271, 546, 556
BssMI	GATC	2 cut(s)	230, 580
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	182, 691
Bst4CI	ACNGT	4 cut(s)	223, 430, 608, 662
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	2 cut(s)	134, 416
BstHHI	GCGC	3 cut(s)	136, 299, 416
BstKTI	GATC	2 cut(s)	233, 583
BstMBI	GATC	2 cut(s)	230, 580
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 303
BstNI	CCWGG	2 cut(s)	182, 691
BstSCI	CCNGG	3 cut(s)	180, 545, 689
BstSFI	CTRYAG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	2 cut(s)	134, 416
BstV1I	GCAGC	3 cut(s)	101, 357, 490
BstX2I	RGATCY	2 cut(s)	230, 580
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	2 cut(s)	230, 580
BsuRI	GGCC	5 cut(s)	258, 451, 526, 566, 677
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	449
CfoI	GCGC	3 cut(s)	136, 299, 416
Cfr13I	GGNCC	4 cut(s)	449, 524, 543, 565
CseI	GACGC	2 cut(s)	295, 562
Csp6I	GTAC	5 cut(s)	130, 391, 463, 529, 694
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	3 cut(s)	226, 286, 734
CviQI	GTAC	5 cut(s)	130, 391, 463, 529, 694
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	2 cut(s)	232, 582
DpnII	GATC	2 cut(s)	230, 580
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	180, 689
EcoT14I	CCWWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	3 cut(s)	229, 289, 737
FaiI	YATR	5 cut(s)	47, 227, 287, 668, 735
FatI	CATG	3 cut(s)	225, 285, 733
FauI	CCCGC	2 cut(s)	86, 440
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	115, 371, 504, 646
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	4 cut(s)	115, 371, 504, 646
GlaI	GCGC	3 cut(s)	135, 298, 415
GluI	GCNGC	4 cut(s)	115, 371, 504, 646
HaeIII	GGCC	5 cut(s)	258, 451, 526, 566, 677
HapII	CCGG	4 cut(s)	354, 484, 519, 546
HgaI	GACGC	2 cut(s)	295, 562
HhaI	GCGC	3 cut(s)	136, 299, 416
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	229, 289, 737
Hin6I	GCGC	3 cut(s)	134, 297, 414
HinP1I	GCGC	3 cut(s)	134, 297, 414
HinfI	GANTC	3 cut(s)	152, 467, 491
HpaII	CCGG	4 cut(s)	354, 484, 519, 546
HphI	GGTGA	2 cut(s)	643, 674
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	585, 612, 626
Hpy188III	TCNNGA	4 cut(s)	172, 331, 602, 771
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	3 cut(s)	311, 457, 578
HpyAV	CCTTC	3 cut(s)	84, 109, 374
HpyCH4III	ACNGT	4 cut(s)	223, 430, 608, 662
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	117, 317, 373, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 303
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	229, 289, 737
HspAI	GCGC	3 cut(s)	134, 297, 414
Kzo9I	GATC	2 cut(s)	230, 580
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	174, 333, 521
Lsp1109I	GCAGC	3 cut(s)	101, 357, 490
LweI	GCATC	2 cut(s)	717, 739
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	2 cut(s)	232, 582
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	2 cut(s)	230, 580
MboII	GAAGA	2 cut(s)	75, 759
MflI	RGATCY	2 cut(s)	230, 580
MhlI	GDGCHC	3 cut(s)	364, 438, 712
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	4 cut(s)	187, 713, 739, 746
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	180
Mox20I	TGGCCA	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	2 cut(s)	186, 750
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	4 cut(s)	354, 484, 519, 546
MspR9I	CCNGG	3 cut(s)	182, 547, 691
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	182, 691
MvnI	CGCG	2 cut(s)	134, 416
MwoI	GCNNNNNNNGC	2 cut(s)	142, 303
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	230, 580
NlaIII	CATG	3 cut(s)	229, 289, 737
NlaIV	GGNNCC	4 cut(s)	232, 361, 517, 544
NsiI	ATGCAT	1 cut(s)	732
NspV	TTCGAA	1 cut(s)	470
PaqCI	CACCTGC	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	467, 491
PflMI	CCANNNNNTGG	1 cut(s)	562
PkrI	GCNGC	4 cut(s)	116, 372, 505, 647
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	180, 689
PspGI	CCWGG	2 cut(s)	180, 689
PspN4I	GGNNCC	4 cut(s)	232, 361, 517, 544
PspPI	GGNCC	4 cut(s)	449, 524, 543, 565
PsrI	GAACNNNNNNTAC	2 cut(s)	131, 163
PstI	CTGCAG	1 cut(s)	375
PsuI	RGATCY	2 cut(s)	230, 580
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	5 cut(s)	131, 392, 464, 530, 695
RsaNI	GTAC	5 cut(s)	130, 391, 463, 529, 694
RseI	CAYNNNNRTG	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	186, 750
SatI	GCNGC	4 cut(s)	115, 371, 504, 646
Sau3AI	GATC	2 cut(s)	230, 580
Sau96I	GGNCC	4 cut(s)	449, 524, 543, 565
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	182, 547, 691
SduI	GDGCHC	3 cut(s)	364, 438, 712
SfaNI	GCATC	2 cut(s)	717, 739
SfcI	CTRYAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	470
SinI	GGWCC	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	187, 713, 739, 746
SsiI	CCGC	7 cut(s)	79, 357, 416, 447, 645, 648, 705
StyD4I	CCNGG	3 cut(s)	180, 545, 689
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	4 cut(s)	223, 430, 608, 662
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	470
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	4 cut(s)	187, 713, 739, 746
TauI	GCSGC	1 cut(s)	648
TfiI	GAWTC	2 cut(s)	467, 491
Tru1I	TTAA	2 cut(s)	186, 750
Tru9I	TTAA	2 cut(s)	186, 750
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	3 cut(s)	114, 370, 503
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	3 cut(s)	123, 489, 629
TspRI	CASTG	1 cut(s)	501
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	543
XmiI	GTMKAC	1 cut(s)	105
ZraI	GACGTC	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.