Rroxscaffold_6G00393130

Cysteine-rich repeat secretory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008291
Physical Location & Seq
Forward (+)
12973563 .. 12975274
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393130.1

Sequence Viewer

Length: 723 bp
ATGGTGGCAATCACAAGCTCTCTACTCCTCTCCCTCTCTACATTCATAGTTTCTCTCTCATCTCTCTACATTCCTTCCCGCTCTTCCTCCACAGACACCTTCGTCTACGGAGGCTGCACACAGGAGAAGTACGCGCCGAACTCGCCCTACGAGTCCAACATCAACTCGCTCCTGACCTCCCTGGTTAACTCAGCCACCTACTCCTCCTACAACAACTACACCGTCATGGGATCCAGCCCCCAAGACGTCATCTACGGCCTCTACCAATGCCGTGGCGACCTCTCCATGCCCGACTGCGCCACCTGCGTCGCCCGTGCAGTCAGCCAAGTCGGGAGCTTCTGCCCCTACAACTCCGGCGGTGCCCTTCAGCTGCAGGGCTGCTACATCAAGTACGATAACACCACCTTTCTTGGCGCGGAGGACAAGACGGTGGTGCTCAAAAATGCGGGCCGTCAGTCGGAGTGTCAGGACTGTCTGACGGAGGCAATCGGACGGGTGAAAAGTGAATGCGGCGGTGCTGATTACGGTGATATGTTCTTGGCCAAGTGTTACGCCAGGTACTCAACTGGCGGTGCTCAATTTTACTCCAAGATGCATCATGATAAATCTAGCAATGAGGGTGAGAAGACATTTGCAATTATTATTGGATTATTAGCAGGAGTTGCTCTGCTCATCATCTTTCTTGCTTTCGTAAGGAAGGTGTTTGGGGGAAATGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

240

Amino Acids

25.79

Weight (kDa)

6.69

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 39 - 133 1.3e-21 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 105
AccII CGCG 2 cut(s) 134, 416
AciI CCGC 7 cut(s) 79, 357, 416, 446, 510, 513, 570
AclWI GGATC 2 cut(s) 225, 238
AcoI YGGCCR 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 3 cut(s) 131, 392, 560
AfiI CCNNNNNNNGG 1 cut(s) 457
AjnI CCWGG 2 cut(s) 180, 554
AluBI AGCT 3 cut(s) 18, 336, 370
AluI AGCT 3 cut(s) 18, 336, 370
Alw21I GWGCWC 2 cut(s) 438, 577
AlwI GGATC 2 cut(s) 225, 238
AoxI GGCC 3 cut(s) 256, 448, 540
ApeKI GCWGC 3 cut(s) 114, 370, 378
AspLEI GCGC 3 cut(s) 136, 299, 416
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 3 cut(s) 508, 539, 632
BaeGI GKGCMC 1 cut(s) 364
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 2 cut(s) 438, 577
BbvI GCAGC 3 cut(s) 101, 357, 365
BceAI ACGGC 3 cut(s) 255, 271, 435
BciT130I CCWGG 2 cut(s) 182, 556
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 4 cut(s) 115, 371, 379, 511
BlsI GCNGC 4 cut(s) 116, 372, 380, 512
Bme1390I CCNGG 2 cut(s) 182, 556
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 2 cut(s) 232, 361
BmrFI CCNGG 2 cut(s) 182, 556
BmsI GCATC 2 cut(s) 582, 604
BpiI GAAGAC 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 180, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 619
BseBI CCWGG 2 cut(s) 182, 556
BseDI CCNNGG 2 cut(s) 180, 271
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 2 cut(s) 17, 193
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 3 cut(s) 101, 357, 365
BsgI GTGCAG 2 cut(s) 100, 336
Bsh1236I CGCG 2 cut(s) 134, 416
BshFI GGCC 3 cut(s) 258, 450, 542
BshNI GGYRCC 1 cut(s) 359
BsiHKAI GWGCWC 2 cut(s) 438, 577
BsiSI CCGG 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 457
BsmI GAATGC 1 cut(s) 512
BsnI GGCC 3 cut(s) 258, 450, 542
Bsp1286I GDGCHC 3 cut(s) 364, 438, 577
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 7 cut(s) 79, 357, 416, 446, 510, 513, 570
BspANI GGCC 3 cut(s) 258, 450, 542
BspCNI CTCAG 1 cut(s) 203
BspFNI CGCG 2 cut(s) 134, 416
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 232, 361
BspMAI CTGCAG 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 2 cut(s) 225, 238
BspQI GCTCTTC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 619
BsrI ACTGG 1 cut(s) 571
BssECI CCNNGG 2 cut(s) 180, 271
BssMI GATC 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 182, 556
Bst4CI ACNGT 4 cut(s) 223, 430, 473, 527
Bst6I CTCTTC 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 271
BstFNI CGCG 2 cut(s) 134, 416
BstHHI GCGC 3 cut(s) 136, 299, 416
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstMWI GCNNNNNNNGC 3 cut(s) 142, 303, 662
BstNI CCWGG 2 cut(s) 182, 556
BstSCI CCNGG 2 cut(s) 180, 554
BstSFI CTRYAG 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 364
BstUI CGCG 2 cut(s) 134, 416
BstV1I GCAGC 3 cut(s) 101, 357, 365
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 3 cut(s) 258, 450, 542
BtgI CCRYGG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 448
CciI TCATGA 1 cut(s) 598
CfoI GCGC 3 cut(s) 136, 299, 416
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 295
Csp6I GTAC 3 cut(s) 130, 391, 559
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 3 cut(s) 226, 286, 599
CviQI GTAC 3 cut(s) 130, 391, 559
DdeI CTNAG 1 cut(s) 190
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 180, 554
EcoT22I ATGCAT 1 cut(s) 597
FaeI CATG 3 cut(s) 229, 289, 602
FaiI YATR 5 cut(s) 47, 227, 287, 533, 600
FatI CATG 3 cut(s) 225, 285, 598
FauI CCCGC 2 cut(s) 86, 439
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 4 cut(s) 115, 371, 379, 511
Fsp4HI GCNGC 4 cut(s) 115, 371, 379, 511
FspBI CTAG 1 cut(s) 609
GlaI GCGC 3 cut(s) 135, 298, 415
GluI GCNGC 4 cut(s) 115, 371, 379, 511
HaeIII GGCC 3 cut(s) 258, 450, 542
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 295
HhaI GCGC 3 cut(s) 136, 299, 416
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 3 cut(s) 229, 289, 602
Hin6I GCGC 3 cut(s) 134, 297, 414
HinP1I GCGC 3 cut(s) 134, 297, 414
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 152
HpaI GTTAAC 1 cut(s) 187
HpaII CCGG 1 cut(s) 354
HphI GGTGA 3 cut(s) 508, 539, 632
Hpy166II GTNNAC 2 cut(s) 106, 187
Hpy188I TCNGA 3 cut(s) 460, 477, 491
Hpy188III TCNNGA 4 cut(s) 172, 331, 467, 599
Hpy8I GTNNAC 2 cut(s) 106, 187
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 84, 109, 374, 691
HpyCH4III ACNGT 4 cut(s) 223, 430, 473, 527
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 5 cut(s) 117, 317, 373, 595, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 303, 662
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 3 cut(s) 229, 289, 602
HspAI GCGC 3 cut(s) 134, 297, 414
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 174, 333
Lsp1109I GCAGC 3 cut(s) 101, 357, 365
LweI GCATC 2 cut(s) 582, 604
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 548
MalI GATC 1 cut(s) 232
MbiI CCGCTC 1 cut(s) 81
MboI GATC 1 cut(s) 230
MboII GAAGA 2 cut(s) 75, 637
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 3 cut(s) 364, 438, 577
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 2 cut(s) 578, 636
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 2 cut(s) 180, 438
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 1 cut(s) 597
MscI TGGCCA 1 cut(s) 542
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 370
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 2 cut(s) 182, 556
Mva1269I GAATGC 1 cut(s) 512
MvaI CCWGG 2 cut(s) 182, 556
MvnI CGCG 2 cut(s) 134, 416
MwoI GCNNNNNNNGC 3 cut(s) 142, 303, 662
NdeII GATC 1 cut(s) 230
NlaIII CATG 3 cut(s) 229, 289, 602
NlaIV GGNNCC 2 cut(s) 232, 361
NsiI ATGCAT 1 cut(s) 597
PagI TCATGA 1 cut(s) 598
PaqCI CACCTGC 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 88
PctI GAATGC 1 cut(s) 512
PkrI GCNGC 4 cut(s) 116, 372, 380, 512
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 180, 554
PspGI CCWGG 2 cut(s) 180, 554
PspN4I GGNNCC 2 cut(s) 232, 361
PspPI GGNCC 1 cut(s) 448
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 131, 392, 560
RsaNI GTAC 3 cut(s) 130, 391, 559
RseI CAYNNNNRTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 4 cut(s) 115, 371, 379, 511
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 182, 556
SduI GDGCHC 3 cut(s) 364, 438, 577
SfaNI GCATC 2 cut(s) 582, 604
SfcI CTRYAG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 2 cut(s) 578, 636
SsiI CCGC 7 cut(s) 79, 357, 416, 446, 510, 513, 570
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 180, 554
TaaI ACNGT 4 cut(s) 223, 430, 473, 527
TaiI ACGT 1 cut(s) 249
TasI AATT 2 cut(s) 578, 636
TauI GCSGC 1 cut(s) 513
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 3 cut(s) 114, 370, 378
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 2 cut(s) 123, 494
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 609
ZraI GACGTC 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.