FvH4_1g30290
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014421
Physical Location & Seq
Forward (+)
23995524 .. 23997528
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30290.t1

Sequence Viewer

Length: 855 bp
ATGGGGAGGCAACCGTGTTGTGATAAGGTTGGGTTGAAGAAGGGACCTTGGACAGCTGAAGAGGACAAGAAGCTCATAAACTTCATCCTCACCAATGGCCAATGCTGTTGGAGAGCTGTGCCTAAGCTTGCAGGATTGTTAAGGTGTGGGAAAAGCTGCAGGCTGAGATGGACCAACTATCTGAGGCCAGACTTGAAGAGAGGTCTATTATCTGACAATGAAGAGAAAATGGTCATTGATCTTCATGCCCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGACAATGAGATCAAAAATCACTGGAATACCCACATCAAGAAGAAACTGAAAAAAATGGGGATTGATCCTCTCACTCACAAACCACTTTCCAATGGCAATGAGGTTGATAACCAACCGCAAAAGAAGCAACAAATACAAAATGATCAAGAGCAACAGCAACAAGAAGAAGAACAATCTTGCACAGCTACTGATGACACATTTGAAATTGACCAAATCAATGAGGAGGCCAAGGAGGAAGACAAAATTGAATTTGTGACGATGGATCATGAGCTCTTGAATGGGTTCTGCATAGATGAAGTTCCACTAATTGAGCCTCATGAGATTCATCTTGTTCCTGATTGTGATCCTTCTTCATCAACTTCATCTTCTTCATCTAGTTCAAATTCATCTTCCAACTTTCTTGAAGACTTGCAATATCTACCAGATTTTGAGTGGCCAAATTCTGATTACAGCAACAACAACAACAACATCATTATCGACAATGACACCATGAGTTTGTGGGATGATGACTTCAGCAGTTGGGGCCAAGAATCTTGGGCATTCGGGGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

285

Amino Acids

32.56

Weight (kDa)

4.82

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 6.7e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 6.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 118 7.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 416
AclWI GGATC 3 cut(s) 359, 570, 638
AcoI YGGCCR 2 cut(s) 97, 734
AcsI RAATTY 3 cut(s) 548, 682, 739
AcuI CTGAAG 2 cut(s) 78, 796
AgsI TTSAA 7 cut(s) 37, 196, 503, 548, 577, 681, 704
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 56, 73, 116, 127, 156, 485, 571
AluI AGCT 7 cut(s) 56, 73, 116, 127, 156, 485, 571
Alw21I GWGCWC 1 cut(s) 573
AlwI GGATC 3 cut(s) 359, 570, 638
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 5 cut(s) 97, 185, 525, 734, 823
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 3 cut(s) 548, 682, 739
Asp700I GAANNNNTTC 1 cut(s) 581
AspS9I GGNCC 3 cut(s) 44, 171, 823
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 44, 171
BalI TGGCCA 2 cut(s) 99, 736
BanII GRGCYC 1 cut(s) 573
BbsI GAAGAC 2 cut(s) 543, 711
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 143
BccI CCATC 3 cut(s) 162, 258, 553
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 442
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 44, 171
BmgT120I GGNCC 3 cut(s) 44, 171, 823
BmiI GGNNCC 2 cut(s) 45, 824
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 543, 711
Bpu10I CCTNAGC 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 47, 289, 528
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 403
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 47, 289, 528
BseGI GGATG 2 cut(s) 84, 808
BseJI GATNNNNATC 1 cut(s) 642
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 155, 173
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 5 cut(s) 99, 187, 527, 736, 825
BsiHKAI GWGCWC 1 cut(s) 573
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 5 cut(s) 99, 187, 527, 736, 825
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 6 cut(s) 238, 309, 364, 442, 562, 643
BspACI CCGC 1 cut(s) 416
BspANI GGCC 5 cut(s) 99, 187, 527, 736, 825
BspCNI CTCAG 2 cut(s) 156, 174
BspHI TCATGA 2 cut(s) 565, 616
BspLI GGNNCC 2 cut(s) 45, 824
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 3 cut(s) 359, 570, 638
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 47, 289, 528
BssMI GATC 6 cut(s) 238, 309, 364, 442, 562, 643
BssT1I CCWWGG 2 cut(s) 47, 528
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 3 cut(s) 54, 191, 216
BstC8I GCNNGC 2 cut(s) 129, 161
BstDEI CTNAG 4 cut(s) 123, 164, 182, 270
BstF5I GGATG 2 cut(s) 84, 808
BstKTI GATC 6 cut(s) 241, 312, 367, 445, 565, 646
BstMBI GATC 6 cut(s) 238, 309, 364, 442, 562, 643
BstMWI GCNNNNNNNGC 2 cut(s) 424, 822
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 2 cut(s) 543, 711
BsuRI GGCC 5 cut(s) 99, 187, 527, 736, 825
BtsCI GGATG 2 cut(s) 84, 808
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 129, 161
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 2 cut(s) 565, 616
Cfr13I GGNCC 3 cut(s) 44, 171, 823
CviAII CATG 4 cut(s) 245, 566, 617, 790
DdeI CTNAG 4 cut(s) 123, 164, 182, 270
DpnI GATC 6 cut(s) 240, 311, 366, 444, 564, 645
DpnII GATC 6 cut(s) 238, 309, 364, 442, 562, 643
EaeI YGGCCR 2 cut(s) 97, 734
Eam1104I CTCTTC 3 cut(s) 54, 191, 216
EarI CTCTTC 3 cut(s) 54, 191, 216
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 47, 528
Eco24I GRGCYC 1 cut(s) 573
Eco47I GGWCC 2 cut(s) 44, 171
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 2 cut(s) 78, 796
EcoICRI GAGCTC 1 cut(s) 571
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 47, 528
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 2 cut(s) 47, 528
FaeI CATG 4 cut(s) 248, 569, 620, 793
FaiI YATR 6 cut(s) 77, 246, 567, 590, 618, 791
FaqI GGGAC 1 cut(s) 57
FatI CATG 4 cut(s) 244, 565, 616, 789
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 2 cut(s) 71, 815
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 675
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 5 cut(s) 99, 187, 527, 736, 825
Hin1II CATG 4 cut(s) 248, 569, 620, 793
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 622, 830
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 183, 214, 745
Hpy188III TCNNGA 7 cut(s) 337, 446, 566, 574, 617, 635, 701
HpyAV CCTTC 2 cut(s) 34, 657
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 131, 159, 480, 588, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 822
HpyF3I CTNAG 4 cut(s) 123, 164, 182, 270
Hsp92II CATG 4 cut(s) 248, 569, 620, 793
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 6 cut(s) 238, 309, 364, 442, 562, 643
LpnPI CCDG 8 cut(s) 117, 145, 201, 276, 303, 307, 648, 735
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 675
MaeIII GTNAC 1 cut(s) 553
MalI GATC 6 cut(s) 240, 311, 366, 444, 564, 645
MboI GATC 6 cut(s) 238, 309, 364, 442, 562, 643
MhlI GDGCHC 1 cut(s) 573
MlsI TGGCCA 2 cut(s) 99, 736
MluCI AATT 6 cut(s) 504, 543, 548, 606, 682, 739
MluNI TGGCCA 2 cut(s) 99, 736
MmeI TCCRAC 2 cut(s) 89, 717
Mox20I TGGCCA 2 cut(s) 99, 736
MroXI GAANNNNTTC 1 cut(s) 581
MscI TGGCCA 2 cut(s) 99, 736
MseI TTAA 1 cut(s) 140
Msp20I TGGCCA 2 cut(s) 99, 736
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 839
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 424, 822
NdeII GATC 6 cut(s) 238, 309, 364, 442, 562, 643
NlaIII CATG 4 cut(s) 248, 569, 620, 793
NlaIV GGNNCC 2 cut(s) 45, 824
NmuCI GTSAC 1 cut(s) 553
PagI TCATGA 2 cut(s) 565, 616
PctI GAATGC 1 cut(s) 839
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 622, 830
PkrI GCNGC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 45, 824
PspPI GGNCC 3 cut(s) 44, 171, 823
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 6 cut(s) 238, 309, 364, 442, 562, 643
Sau96I GGNCC 3 cut(s) 44, 171, 823
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 573
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 2 cut(s) 44, 171
Sse9I AATT 6 cut(s) 504, 543, 548, 606, 682, 739
SsiI CCGC 1 cut(s) 416
SspMI CTAG 1 cut(s) 675
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 47, 528
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 777
TasI AATT 6 cut(s) 504, 543, 548, 606, 682, 739
TfiI GAWTC 2 cut(s) 622, 830
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 9 cut(s) 73, 233, 234, 609, 614, 642, 651, 660, 675
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 44, 171
XapI RAATTY 3 cut(s) 548, 682, 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 729
XmnI GAANNNNTTC 1 cut(s) 581
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.