Prupe.3G017100_v2.0.a1
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014421
Physical Location & Seq
Reverse (-)
1224856 .. 1227278
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G017100.1

Sequence Viewer

Length: 813 bp
ATGGGAAGGCAACCATGCTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACAGCTGAAGAGGACAAGAAGCTCATTAACTTCATCCTCACAAATGGCCAATGCTGCTGGAGAGCTGTTCCTAAGCTTGCAGGATTGTTAAGGTGTGGAAAAAGTTGCAGGCTGAGATGGACCAACTATCTTAGGCCAGACTTGAAGAGAGGTCTTTTATCAGAAATTGAAGAGAAAATGGTCATTGATCTTCACGCTCAACTTGGCAACAGATGGTCTAAGATTGCCTCTCATCTCCCTGGAAGAACAGACAATGAGATCAAAAATCATTGGAACACCCACATCAAGAAGAAGTTGAAGAAAATGGGGATTGATCCTCTCACCCACAAGCCAATTGCTAATGATGTCAATGATCAAAGCCAACAAGAACAAAGTCAAAACCAACAAGAAGAAGCACAAAAATCTTGTCCAGCTAATGACACATTTGAAGTTGAGCAAAACACCCCTGCTGCTCAAGCCATAGAGGAGGAAGGAGGAGGTGATGAGTTGGATAAAATGGAGCTCTTGATTGATGGGTTCTGCACAGATGAAGTTCCATTGATTGAGCCCCATGAGATTCTGGTCCCTTGTGCTCCTTCCTCTTCTTCATCAACCTCTTCATCTTCATCTTCTTCAAATTCAGCATCCAACTTTCTTGAAGACCTGCATCTCCCAGATTTTGAGTGGCTTTGTGATTACAGCAACAACAATGACAGCATTGGATTGTGGGATGATGACTTCAGCAGTTGGGGTCAAGAATCTTGGGCATATGGGATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

271

Amino Acids

30.35

Weight (kDa)

4.95

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 702
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 2 cut(s) 78, 754
AgsI TTSAA 7 cut(s) 37, 196, 221, 349, 479, 666, 689
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 6 cut(s) 56, 73, 116, 127, 464, 553
AluI AGCT 6 cut(s) 56, 73, 116, 127, 464, 553
Alw21I GWGCWC 2 cut(s) 555, 625
AlwI GGATC 1 cut(s) 359
AoxI GGCC 3 cut(s) 44, 97, 185
ApeKI GCWGC 2 cut(s) 105, 500
ApoI RAATTY 1 cut(s) 667
ArsI GACNNNNNNTTYG 2 cut(s) 442, 474
AspS9I GGNCC 3 cut(s) 44, 171, 613
AsuHPI GGTGA 2 cut(s) 364, 542
AvaII GGWCC 2 cut(s) 171, 613
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 2 cut(s) 555, 600
BbsI GAAGAC 1 cut(s) 696
Bbv12I GWGCWC 2 cut(s) 555, 625
BbvI GCAGC 2 cut(s) 92, 487
BccI CCATC 3 cut(s) 162, 258, 557
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 702
BisI GCNGC 2 cut(s) 106, 501
BlsI GCNGC 2 cut(s) 107, 502
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 171, 613
BmgT120I GGNCC 3 cut(s) 44, 171, 613
BmiI GGNNCC 2 cut(s) 45, 615
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 683, 706
BpiI GAAGAC 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 47, 289
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 47, 289
BseGI GGATG 3 cut(s) 84, 674, 766
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 2 cut(s) 530, 540
BseXI GCAGC 2 cut(s) 92, 487
BsgI GTGCAG 1 cut(s) 556
BshFI GGCC 3 cut(s) 46, 99, 187
BsiHKAI GWGCWC 2 cut(s) 555, 625
BslFI GGGAC 1 cut(s) 599
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 3 cut(s) 46, 99, 187
Bsp1286I GDGCHC 3 cut(s) 555, 600, 625
Bsp143I GATC 4 cut(s) 238, 309, 364, 403
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 3 cut(s) 46, 99, 187
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 45, 615
BspMI ACCTGC 1 cut(s) 702
BspPI GGATC 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 47, 289
BssMI GATC 4 cut(s) 238, 309, 364, 403
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 5 cut(s) 54, 191, 216, 637, 652
BstC8I GCNNGC 2 cut(s) 129, 161
BstDEI CTNAG 4 cut(s) 123, 164, 182, 270
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 84, 674, 766
BstKTI GATC 4 cut(s) 241, 312, 367, 406
BstMBI GATC 4 cut(s) 238, 309, 364, 403
BstMWI GCNNNNNNNGC 2 cut(s) 105, 506
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 92, 487
BstV2I GAAGAC 1 cut(s) 696
BsuRI GGCC 3 cut(s) 46, 99, 187
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 84, 674, 766
BveI ACCTGC 1 cut(s) 702
Cac8I GCNNGC 2 cut(s) 129, 161
Cfr13I GGNCC 3 cut(s) 44, 171, 613
CviAII CATG 3 cut(s) 15, 48, 602
DdeI CTNAG 4 cut(s) 123, 164, 182, 270
DpnI GATC 4 cut(s) 240, 311, 366, 405
DpnII GATC 4 cut(s) 238, 309, 364, 403
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 5 cut(s) 54, 191, 216, 637, 652
EarI CTCTTC 5 cut(s) 54, 191, 216, 637, 652
Ecl136II GAGCTC 1 cut(s) 553
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 555, 600
Eco47I GGWCC 2 cut(s) 171, 613
Eco53kI GAGCTC 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 78, 754
EcoICRI GAGCTC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 555, 600
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 3 cut(s) 18, 51, 605
FaiI YATR 6 cut(s) 16, 49, 512, 603, 799, 801
FaqI GGGAC 1 cut(s) 599
FatI CATG 3 cut(s) 14, 47, 601
FauNDI CATATG 1 cut(s) 799
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 106, 501
FokI GGATG 3 cut(s) 71, 661, 773
FriOI GRGCYC 2 cut(s) 555, 600
Fsp4HI GCNGC 2 cut(s) 106, 501
GluI GCNGC 2 cut(s) 106, 501
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 46, 99, 187
Hin1II CATG 3 cut(s) 18, 51, 605
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 607, 788
HphI GGTGA 2 cut(s) 364, 542
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 4 cut(s) 337, 556, 686, 785
HpyAV CCTTC 3 cut(s) 34, 515, 636
HpyCH4V TGCA 4 cut(s) 131, 159, 573, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 506
HpyF3I CTNAG 4 cut(s) 123, 164, 182, 270
Hsp92II CATG 3 cut(s) 18, 51, 605
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 4 cut(s) 238, 309, 364, 403
LmnI GCTCC 2 cut(s) 550, 628
Lsp1109I GCAGC 2 cut(s) 92, 487
LweI GCATC 2 cut(s) 683, 706
MaeIII GTNAC 1 cut(s) 20
MalI GATC 4 cut(s) 240, 311, 366, 405
MboI GATC 4 cut(s) 238, 309, 364, 403
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 3 cut(s) 555, 600, 625
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 216, 384, 667
MluNI TGGCCA 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 519, 702
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 78, 140
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 105, 506
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 799
NdeII GATC 4 cut(s) 238, 309, 364, 403
NlaIII CATG 3 cut(s) 18, 51, 605
NlaIV GGNNCC 2 cut(s) 45, 615
NmuCI GTSAC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 607, 788
PkrI GCNGC 2 cut(s) 107, 502
Psp124BI GAGCTC 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 45, 615
PspPI GGNCC 3 cut(s) 44, 171, 613
PvuII CAGCTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 78, 140
SatI GCNGC 2 cut(s) 106, 501
Sau3AI GATC 4 cut(s) 238, 309, 364, 403
Sau96I GGNCC 3 cut(s) 44, 171, 613
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 555, 600, 625
SfaNI GCATC 2 cut(s) 683, 706
SinI GGWCC 2 cut(s) 171, 613
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 3 cut(s) 216, 384, 667
SstI GAGCTC 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TasI AATT 3 cut(s) 216, 384, 667
TfiI GAWTC 2 cut(s) 607, 788
Tru1I TTAA 2 cut(s) 78, 140
Tru9I TTAA 2 cut(s) 78, 140
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 105, 500
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 73, 594, 627, 639, 645
VpaK11BI GGWCC 2 cut(s) 171, 613
XapI RAATTY 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.