Rh3DG329700
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014421
Physical Location & Seq
Reverse (-)
36500411 .. 36502594
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG329700.1

Sequence Viewer

Length: 645 bp
ATGGTCATTGATCTTCATGCCCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAAAATCACTGGAATACCCACATCAAGAAGAAGCTGAAAAAAATGGGGATTGATCCTCTCACTCACAAACCACTTCCCAATGGCAATGAGATTGAAAACCAATCCCAACAAAAGCAACATATACAAAATGATCAAGAGCAACAGCAACAAGAAGAAGAACAATCTTGTACAGCTACTGATGACACATTCGAAATTGACCAAATCAATGAGGGGGCCAAAGTCGAAGACAAAGTTGAATTTGTGACAATGGATCATGATGATCATGAGCTCTTGAATGGGTTCTGCATAGATGAAGTTCCACTTATTGAGCTGCATGAGATTCATCTTGTTCCTAATTGTGCTCCTTCTTCATCAACTTCATCTTCTTCATCTTGTTCAAATTCATCCTCCAACTTTCTCGAAGACTTGCAATATCTACCAGATTTTGGATGGCCAAATTGTGATCACAGCAGCAGCAGCAACAAGAACAACGACATCATTATCAACAATGACACCATGGGCTTGTGGGATGATGACTTCAGCAGTTGGGGCCAAGAATCCTGGGCGTTTGGGGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

214

Amino Acids

24.3

Weight (kDa)

4.55

Isoelectric Point (pI)

62.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 3 - 35 2.5e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 3 - 42 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AclWI GGATC 2 cut(s) 131, 342
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 2 cut(s) 320, 463
AcuI CTGAAG 1 cut(s) 586
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 509
AgsI TTSAA 4 cut(s) 179, 320, 358, 462
AjnI CCWGG 2 cut(s) 61, 623
AluBI AGCT 4 cut(s) 118, 257, 352, 394
AluI AGCT 4 cut(s) 118, 257, 352, 394
Alw21I GWGCWC 2 cut(s) 354, 427
AlwI GGATC 2 cut(s) 131, 342
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 3 cut(s) 297, 515, 613
ApeKI GCWGC 4 cut(s) 394, 534, 537, 540
ApoI RAATTY 2 cut(s) 320, 463
Asp700I GAANNNNTTC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 297, 613
AsuII TTCGAA 1 cut(s) 273
BalI TGGCCA 1 cut(s) 517
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 315, 492
Bbv12I GWGCWC 2 cut(s) 354, 427
BbvI GCAGC 4 cut(s) 381, 546, 549, 552
BccI CCATC 2 cut(s) 30, 507
BciT130I CCWGG 2 cut(s) 63, 625
BclI TGATCA 3 cut(s) 214, 343, 526
BisI GCNGC 4 cut(s) 395, 535, 538, 541
BlsI GCNGC 4 cut(s) 396, 536, 539, 542
Bme1390I CCNGG 2 cut(s) 63, 625
BmgT120I GGNCC 2 cut(s) 297, 613
BmiI GGNNCC 2 cut(s) 298, 614
BmrFI CCNGG 2 cut(s) 63, 625
BpiI GAAGAC 2 cut(s) 315, 492
Bpu14I TTCGAA 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 61, 579, 624
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 2 cut(s) 63, 625
BseDI CCNNGG 3 cut(s) 61, 579, 624
BseGI GGATG 3 cut(s) 467, 518, 598
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 4 cut(s) 381, 546, 549, 552
BshFI GGCC 3 cut(s) 299, 517, 615
BsiHKAI GWGCWC 2 cut(s) 354, 427
BslI CCNNNNNNNGG 1 cut(s) 509
BsnI GGCC 3 cut(s) 299, 517, 615
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 354, 427
Bsp1407I TGTACA 1 cut(s) 251
Bsp143I GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
Bsp19I CCATGG 1 cut(s) 579
BspANI GGCC 3 cut(s) 299, 517, 615
BspHI TCATGA 2 cut(s) 337, 346
BspLI GGNNCC 2 cut(s) 298, 614
BspPI GGATC 2 cut(s) 131, 342
BspT104I TTCGAA 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 251
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 61, 579, 624
BssMI GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 2 cut(s) 63, 625
BstAUI TGTACA 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 3 cut(s) 467, 518, 598
BstKTI GATC 7 cut(s) 13, 84, 139, 217, 337, 346, 529
BstMBI GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
BstMWI GCNNNNNNNGC 2 cut(s) 540, 612
BstNI CCWGG 2 cut(s) 63, 625
BstSCI CCNGG 2 cut(s) 61, 623
BstV1I GCAGC 4 cut(s) 381, 546, 549, 552
BstV2I GAAGAC 2 cut(s) 315, 492
BsuRI GGCC 3 cut(s) 299, 517, 615
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 3 cut(s) 467, 518, 598
BtsIMutI CAGTG 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 260
CciI TCATGA 2 cut(s) 337, 346
Cfr13I GGNCC 2 cut(s) 297, 613
Csp6I GTAC 1 cut(s) 252
CviAII CATG 5 cut(s) 17, 338, 347, 398, 580
CviJI RGCY 8 cut(s) 118, 257, 299, 352, 394, 517, 585, 615
CviKI_1 RGCY 8 cut(s) 118, 257, 299, 352, 394, 517, 585, 615
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 42
DpnI GATC 7 cut(s) 12, 83, 138, 216, 336, 345, 528
DpnII GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
EaeI YGGCCR 1 cut(s) 515
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 579
Eco24I GRGCYC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 61, 623
EcoT14I CCWWGG 1 cut(s) 579
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 5 cut(s) 20, 341, 350, 401, 583
FaiI YATR 8 cut(s) 18, 204, 206, 339, 348, 371, 399, 581
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 5 cut(s) 16, 337, 346, 397, 579
FbaI TGATCA 3 cut(s) 214, 343, 526
Fnu4HI GCNGC 4 cut(s) 395, 535, 538, 541
FokI GGATG 3 cut(s) 454, 525, 605
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 4 cut(s) 395, 535, 538, 541
GluI GCNGC 4 cut(s) 395, 535, 538, 541
HaeIII GGCC 3 cut(s) 299, 517, 615
Hin1II CATG 5 cut(s) 20, 341, 350, 401, 583
HinfI GANTC 2 cut(s) 403, 620
Hpy188III TCNNGA 6 cut(s) 109, 218, 338, 347, 355, 482
HpyAV CCTTC 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 369, 397, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 540, 612
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 5 cut(s) 20, 341, 350, 401, 583
Ksp22I TGATCA 3 cut(s) 214, 343, 526
Kzo9I GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 6 cut(s) 48, 75, 79, 516, 610, 637
Lsp1109I GCAGC 4 cut(s) 381, 546, 549, 552
MaeIII GTNAC 1 cut(s) 325
MalI GATC 7 cut(s) 12, 83, 138, 216, 336, 345, 528
MboI GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
MhlI GDGCHC 2 cut(s) 354, 427
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 5 cut(s) 276, 320, 418, 463, 520
MluNI TGGCCA 1 cut(s) 517
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 3 cut(s) 150, 286, 481
Mox20I TGGCCA 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 517
MspR9I CCNGG 2 cut(s) 63, 625
MvaI CCWGG 2 cut(s) 63, 625
MwoI GCNNNNNNNGC 2 cut(s) 540, 612
NcoI CCATGG 1 cut(s) 579
NdeII GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
NlaIII CATG 5 cut(s) 20, 341, 350, 401, 583
NlaIV GGNNCC 2 cut(s) 298, 614
NmuCI GTSAC 1 cut(s) 325
NspV TTCGAA 1 cut(s) 273
PagI TCATGA 2 cut(s) 337, 346
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 403, 620
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 4 cut(s) 396, 536, 539, 542
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 61, 623
PspGI CCWGG 2 cut(s) 61, 623
PspN4I GGNNCC 2 cut(s) 298, 614
PspPI GGNCC 2 cut(s) 297, 613
PstNI CAGNNNCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SacI GAGCTC 1 cut(s) 354
SatI GCNGC 4 cut(s) 395, 535, 538, 541
Sau3AI GATC 7 cut(s) 10, 81, 136, 214, 334, 343, 526
Sau96I GGNCC 2 cut(s) 297, 613
ScrFI CCNGG 2 cut(s) 63, 625
SduI GDGCHC 2 cut(s) 354, 427
SetI ASST 4 cut(s) 120, 259, 354, 396
SfuI TTCGAA 1 cut(s) 273
Sse9I AATT 5 cut(s) 276, 320, 418, 463, 520
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 61, 623
StyI CCWWGG 1 cut(s) 579
TaqI TCGA 3 cut(s) 273, 306, 483
TasI AATT 5 cut(s) 276, 320, 418, 463, 520
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 2 cut(s) 403, 620
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 4 cut(s) 394, 534, 537, 540
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 7 cut(s) 5, 390, 395, 423, 432, 441, 456
TspRI CASTG 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 509
XapI RAATTY 2 cut(s) 320, 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.