Rw3G026120
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014421
Physical Location & Seq
Reverse (-)
35498418 .. 35500240
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026120.1

Sequence Viewer

Length: 873 bp
ATGGGGAGGCAACCATGTTGTGATAAGGTTGGGTTGAAGAAGGGACCTTGGACAGCCGAAGAGGACAAGAAGCTCATTAACTTCATCCTCACCAATGGCCAATGCTGTTGGAGAGCTGTACCTAAGCTTGCAGGATTGTTAAGGTGTGGAAAAAGCTGCAGGCTGAGATGGACCAACTATCTCAGGCCAGACTTGAAGAGAGGTCTGTTATCTGAACATGAAGAGAAGATGGTCATTGATCTTCATGCCCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAAAATCACTGGAATACCCACATCAAGAAGAAGCTGAAAAAAATGGGGATTGATCCTCTCACTCACAAACCACTTCCCAATGGCAATGAGATTGAAAACCAATCCCAACAAAAGCAACATATACAAAATGATCAAGAGCAACAGCAACAAGAAGAAGAACAATCTTGTACAGCTACTGATGACACATTCGAAATTGACCAAATCAATGAGGGGGCCAAAGTCGAAGACAAAGTTGAATTTGTGACAATGGATCATGATGATCATGAGCTCTTGAATGGGTTCTGCATAGATGAAGTTCCACTTATTGAGCTGCATGAGATTCATCTTGTTCCTAATTGTGCTCCTTCTTCATCAACTTCATCTTCTTCATCTTGTTCAAATTCATCCTCCAACTTTCTCGAAGACTTGCAATATCTACCAGATTTTGGATGGCCAAATTGTGATCACAGCAGCAGCAGCAACAAGAACAACGACATCATTATCAACAATGACACCATGGGCTTGTGGGATGATGACTTCAGCAGTTGGGGCCAAGAATCCTGGGCGTTTGGGGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

290

Amino Acids

33.04

Weight (kDa)

5.21

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.6e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 118 6.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 737
AclWI GGATC 2 cut(s) 359, 570
AcoI YGGCCR 2 cut(s) 97, 743
AcsI RAATTY 2 cut(s) 548, 691
AcuI CTGAAG 1 cut(s) 814
AfaI GTAC 2 cut(s) 120, 481
AfiI CCNNNNNNNGG 1 cut(s) 737
AgsI TTSAA 6 cut(s) 37, 196, 407, 548, 586, 690
AjnI CCWGG 2 cut(s) 289, 851
AluBI AGCT 8 cut(s) 73, 116, 127, 156, 346, 485, 580, 622
AluI AGCT 8 cut(s) 73, 116, 127, 156, 346, 485, 580, 622
Alw21I GWGCWC 2 cut(s) 582, 655
AlwI GGATC 2 cut(s) 359, 570
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 5 cut(s) 97, 185, 525, 743, 841
ApeKI GCWGC 5 cut(s) 156, 622, 762, 765, 768
ApoI RAATTY 2 cut(s) 548, 691
Asp700I GAANNNNTTC 1 cut(s) 590
AspS9I GGNCC 4 cut(s) 44, 171, 525, 841
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 501
AvaII GGWCC 2 cut(s) 44, 171
BalI TGGCCA 2 cut(s) 99, 745
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 2 cut(s) 543, 720
Bbv12I GWGCWC 2 cut(s) 582, 655
BbvI GCAGC 5 cut(s) 143, 609, 774, 777, 780
BccI CCATC 4 cut(s) 162, 223, 258, 735
BciT130I CCWGG 2 cut(s) 291, 853
BclI TGATCA 3 cut(s) 442, 571, 754
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 5 cut(s) 157, 623, 763, 766, 769
BlsI GCNGC 5 cut(s) 158, 624, 764, 767, 770
Bme1390I CCNGG 2 cut(s) 291, 853
Bme18I GGWCC 2 cut(s) 44, 171
BmgT120I GGNCC 4 cut(s) 44, 171, 525, 841
BmiI GGNNCC 3 cut(s) 45, 526, 842
BmrFI CCNGG 2 cut(s) 291, 853
BpiI GAAGAC 2 cut(s) 543, 720
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 47, 289, 807, 852
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 291, 853
BseDI CCNNGG 4 cut(s) 47, 289, 807, 852
BseGI GGATG 4 cut(s) 84, 695, 746, 826
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 155, 196
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 5 cut(s) 143, 609, 774, 777, 780
BshFI GGCC 5 cut(s) 99, 187, 527, 745, 843
BsiHKAI GWGCWC 2 cut(s) 582, 655
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 737
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 5 cut(s) 99, 187, 527, 745, 843
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 582, 655
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
Bsp19I CCATGG 1 cut(s) 807
BspANI GGCC 5 cut(s) 99, 187, 527, 745, 843
BspCNI CTCAG 2 cut(s) 156, 195
BspHI TCATGA 2 cut(s) 565, 574
BspLI GGNNCC 3 cut(s) 45, 526, 842
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 359, 570
BspT104I TTCGAA 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 47, 289, 807, 852
BssMI GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
BssT1I CCWWGG 2 cut(s) 47, 807
Bst2UI CCWGG 2 cut(s) 291, 853
Bst6I CTCTTC 3 cut(s) 54, 191, 216
BstAUI TGTACA 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 129, 161
BstDEI CTNAG 4 cut(s) 123, 164, 182, 270
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 4 cut(s) 84, 695, 746, 826
BstKTI GATC 7 cut(s) 241, 312, 367, 445, 565, 574, 757
BstMBI GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
BstMWI GCNNNNNNNGC 2 cut(s) 768, 840
BstNI CCWGG 2 cut(s) 291, 853
BstSCI CCNGG 2 cut(s) 289, 851
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 5 cut(s) 143, 609, 774, 777, 780
BstV2I GAAGAC 2 cut(s) 543, 720
BsuRI GGCC 5 cut(s) 99, 187, 527, 745, 843
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 4 cut(s) 84, 695, 746, 826
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 129, 161
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 2 cut(s) 565, 574
Cfr13I GGNCC 4 cut(s) 44, 171, 525, 841
Csp6I GTAC 2 cut(s) 119, 480
CviAII CATG 7 cut(s) 15, 218, 245, 566, 575, 626, 808
CviQI GTAC 2 cut(s) 119, 480
DdeI CTNAG 4 cut(s) 123, 164, 182, 270
DpnI GATC 7 cut(s) 240, 311, 366, 444, 564, 573, 756
DpnII GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
EaeI YGGCCR 2 cut(s) 97, 743
Eam1104I CTCTTC 3 cut(s) 54, 191, 216
EarI CTCTTC 3 cut(s) 54, 191, 216
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 47, 807
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 44, 171
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 814
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 289, 851
EcoT14I CCWWGG 2 cut(s) 47, 807
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 47, 807
FaeI CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 14, 217, 244, 565, 574, 625, 807
FbaI TGATCA 3 cut(s) 442, 571, 754
Fnu4HI GCNGC 5 cut(s) 157, 623, 763, 766, 769
FokI GGATG 4 cut(s) 71, 682, 753, 833
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 157, 623, 763, 766, 769
GluI GCNGC 5 cut(s) 157, 623, 763, 766, 769
HaeIII GGCC 5 cut(s) 99, 187, 527, 745, 843
Hin1II CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 631, 848
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 6 cut(s) 337, 446, 566, 575, 583, 710
HpyAV CCTTC 2 cut(s) 34, 666
HpyCH4V TGCA 5 cut(s) 131, 159, 597, 625, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 768, 840
HpyF3I CTNAG 4 cut(s) 123, 164, 182, 270
Hsp92II CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
Ksp22I TGATCA 3 cut(s) 442, 571, 754
Kzo9I GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 5 cut(s) 143, 609, 774, 777, 780
MaeIII GTNAC 1 cut(s) 553
MalI GATC 7 cut(s) 240, 311, 366, 444, 564, 573, 756
MboI GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
MhlI GDGCHC 2 cut(s) 582, 655
MlsI TGGCCA 2 cut(s) 99, 745
MluCI AATT 5 cut(s) 504, 548, 646, 691, 748
MluNI TGGCCA 2 cut(s) 99, 745
MmeI TCCRAC 2 cut(s) 89, 726
MnlI CCTC 6 cut(s) 55, 98, 194, 378, 514, 709
Mox20I TGGCCA 2 cut(s) 99, 745
MroXI GAANNNNTTC 1 cut(s) 590
MscI TGGCCA 2 cut(s) 99, 745
MseI TTAA 2 cut(s) 78, 140
Msp20I TGGCCA 2 cut(s) 99, 745
MspR9I CCNGG 2 cut(s) 291, 853
MvaI CCWGG 2 cut(s) 291, 853
MwoI GCNNNNNNNGC 2 cut(s) 768, 840
NcoI CCATGG 1 cut(s) 807
NdeII GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
NlaIII CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
NlaIV GGNNCC 3 cut(s) 45, 526, 842
NmuCI GTSAC 1 cut(s) 553
NspV TTCGAA 1 cut(s) 501
PagI TCATGA 2 cut(s) 565, 574
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 631, 848
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 5 cut(s) 158, 624, 764, 767, 770
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 289, 851
PspGI CCWGG 2 cut(s) 289, 851
PspN4I GGNNCC 3 cut(s) 45, 526, 842
PspPI GGNCC 4 cut(s) 44, 171, 525, 841
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 120, 481
RsaNI GTAC 2 cut(s) 119, 480
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 78, 140
SatI GCNGC 5 cut(s) 157, 623, 763, 766, 769
Sau3AI GATC 7 cut(s) 238, 309, 364, 442, 562, 571, 754
Sau96I GGNCC 4 cut(s) 44, 171, 525, 841
ScrFI CCNGG 2 cut(s) 291, 853
SduI GDGCHC 2 cut(s) 582, 655
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 501
SinI GGWCC 2 cut(s) 44, 171
Sse9I AATT 5 cut(s) 504, 548, 646, 691, 748
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 289, 851
StyI CCWWGG 2 cut(s) 47, 807
TaqI TCGA 3 cut(s) 501, 534, 711
TasI AATT 5 cut(s) 504, 548, 646, 691, 748
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 2 cut(s) 631, 848
Tru1I TTAA 2 cut(s) 78, 140
Tru9I TTAA 2 cut(s) 78, 140
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 5 cut(s) 156, 622, 762, 765, 768
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 9 cut(s) 73, 233, 234, 618, 623, 651, 660, 669, 684
TspRI CASTG 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 44, 171
XapI RAATTY 2 cut(s) 548, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.