Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014421

Physical Location & Seq

Genomic Coordinates Reverse (-)

36445182 .. 36447364

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG329100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGGATTGATCCTCTCACTCACAAACCACTTCCCAATGGCAATGAGATTGAAAACCAATCCCAACAAAAGCAACATATACAAAATGATCAAGAGCAACAGCAACAAGAAGAAGAACAATCTTGTACAGCTACTGATGACACATTCGAAATTGACCAAATCAATGAGGGGGCCAAAGTCGAAGACAAAGTTGAATTTGTGACAATGGATCATGATGATCATGAACTCTTGAATGGGTTCTGCATAGATGAAGTTCCACTTATTGAGCCGCATGAGATTCATCTTGTTCCTAATTGTGCTCCTTCTTCATCAACTTCATCTTCTTCATCTTGTTCAAATTCATCCTCCAACTTTCTCGAAGACTTGCAATATCTATCAGATTTTGGATGGCCAAATTGTGATTACAGCAGCAGCAGCAACAACAACAACGACATCATTATCAACAATGACACCATGGGCTTGTGGGATGATGACTTCAGCAGTTGGGGCCAAGAATCCTGGGCGTTTGGGGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

172

Amino Acids

19.35

Weight (kDa)

4.05

Isoelectric Point (pI)

67.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66230
fragaria_vesca	FvH4_1g30290
malus_domestica	MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica	Prupe.3G017100_v2.0.a1
pyrus_communis	pycom09g18240 pycom17g26820
rosa_chinensis	RchiOBHm_Chr3g0491061
rosa_laevigata	RLG00000022867
rosa_multiflora	Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii	Rroxscaffold_6G00393250
rosa_rugosa	Rorug03G0245700
rosa_samantha	Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana	Rw3G026120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	2 cut(s)	5, 216
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	194, 337
AcuI	CTGAAG	1 cut(s)	460
AfaI	GTAC	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	53, 194, 232, 336
AjnI	CCWGG	1 cut(s)	497
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	5, 216
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	3 cut(s)	171, 389, 487
ApeKI	GCWGC	3 cut(s)	408, 411, 414
ApoI	RAATTY	2 cut(s)	194, 337
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	171, 487
AsuII	TTCGAA	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	391
BbsI	GAAGAC	2 cut(s)	189, 366
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	420, 423, 426
BccI	CCATC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	499
BclI	TGATCA	2 cut(s)	88, 217
BisI	GCNGC	4 cut(s)	269, 409, 412, 415
BlsI	GCNGC	4 cut(s)	270, 410, 413, 416
Bme1390I	CCNGG	1 cut(s)	499
BmgT120I	GGNCC	2 cut(s)	171, 487
BmiI	GGNNCC	2 cut(s)	172, 488
BmrFI	CCNGG	1 cut(s)	499
BpiI	GAAGAC	2 cut(s)	189, 366
Bpu14I	TTCGAA	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	453, 498
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	453, 498
BseGI	GGATG	3 cut(s)	341, 392, 472
BseMI	GCAATG	1 cut(s)	49
BseXI	GCAGC	3 cut(s)	420, 423, 426
BshFI	GGCC	3 cut(s)	173, 391, 489
BsiHKAI	GWGCWC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	173, 391, 489
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp1407I	TGTACA	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	10, 88, 208, 217
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	3 cut(s)	173, 391, 489
BspHI	TCATGA	2 cut(s)	211, 220
BspLI	GGNNCC	2 cut(s)	172, 488
BspPI	GGATC	2 cut(s)	5, 216
BspT104I	TTCGAA	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	453, 498
BssMI	GATC	4 cut(s)	10, 88, 208, 217
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	499
BstAUI	TGTACA	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	3 cut(s)	341, 392, 472
BstKTI	GATC	4 cut(s)	13, 91, 211, 220
BstMBI	GATC	4 cut(s)	10, 88, 208, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 486
BstNI	CCWGG	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	497
BstV1I	GCAGC	3 cut(s)	420, 423, 426
BstV2I	GAAGAC	2 cut(s)	189, 366
BsuRI	GGCC	3 cut(s)	173, 391, 489
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	3 cut(s)	341, 392, 472
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	2 cut(s)	211, 220
Cfr13I	GGNCC	2 cut(s)	171, 487
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	4 cut(s)	212, 221, 272, 454
CviJI	RGCY	6 cut(s)	131, 173, 268, 391, 459, 489
CviKI_1	RGCY	6 cut(s)	131, 173, 268, 391, 459, 489
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	4 cut(s)	12, 90, 210, 219
DpnII	GATC	4 cut(s)	10, 88, 208, 217
EaeI	YGGCCR	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	215, 224, 275, 457
FaiI	YATR	7 cut(s)	78, 80, 213, 222, 245, 273, 455
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	4 cut(s)	211, 220, 271, 453
FbaI	TGATCA	2 cut(s)	88, 217
Fnu4HI	GCNGC	4 cut(s)	269, 409, 412, 415
FokI	GGATG	3 cut(s)	328, 399, 479
Fsp4HI	GCNGC	4 cut(s)	269, 409, 412, 415
GluI	GCNGC	4 cut(s)	269, 409, 412, 415
HaeIII	GGCC	3 cut(s)	173, 391, 489
Hin1II	CATG	4 cut(s)	215, 224, 275, 457
HinfI	GANTC	2 cut(s)	277, 494
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	5 cut(s)	92, 212, 221, 229, 356
HpyAV	CCTTC	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	243, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 486
Hsp92II	CATG	4 cut(s)	215, 224, 275, 457
Ksp22I	TGATCA	2 cut(s)	88, 217
Kzo9I	GATC	4 cut(s)	10, 88, 208, 217
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	2 cut(s)	484, 511
Lsp1109I	GCAGC	3 cut(s)	420, 423, 426
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	4 cut(s)	12, 90, 210, 219
MboI	GATC	4 cut(s)	10, 88, 208, 217
MboII	GAAGA	7 cut(s)	122, 125, 194, 297, 312, 315, 371
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	5 cut(s)	150, 194, 292, 337, 394
MluNI	TGGCCA	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	3 cut(s)	24, 160, 355
Mox20I	TGGCCA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	391
Msp20I	TGGCCA	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	414, 486
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	4 cut(s)	10, 88, 208, 217
NlaIII	CATG	4 cut(s)	215, 224, 275, 457
NlaIV	GGNNCC	2 cut(s)	172, 488
NmuCI	GTSAC	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	147
PagI	TCATGA	2 cut(s)	211, 220
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	277, 494
PkrI	GCNGC	4 cut(s)	270, 410, 413, 416
Psp6I	CCWGG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	172, 488
PspPI	GGNCC	2 cut(s)	171, 487
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	269, 409, 412, 415
Sau3AI	GATC	4 cut(s)	10, 88, 208, 217
Sau96I	GGNCC	2 cut(s)	171, 487
ScrFI	CCNGG	1 cut(s)	499
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	147
Sse9I	AATT	5 cut(s)	150, 194, 292, 337, 394
SsiI	CCGC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	497
StyI	CCWWGG	1 cut(s)	453
TaqI	TCGA	3 cut(s)	147, 180, 357
TasI	AATT	5 cut(s)	150, 194, 292, 337, 394
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	277, 494
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	408, 411, 414
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	7 cut(s)	237, 264, 269, 297, 306, 315, 330
XapI	RAATTY	2 cut(s)	194, 337
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.