Rmu_sc0005038.1_g000005
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005038.1
OG0014421
Physical Location & Seq
Reverse (-)
24323 .. 25950
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005038.1_g000005.1.cds

Sequence Viewer

Length: 873 bp
atggggaggcaaccatgttgtgataaggttgggttgaagaagggaccttggacagccgaagaggacaagaagctcattaacttcatcctcaccaatggccaatgctgttggagagctgtacctaagcttgcaggattgttaaggtgtggaaaaagctgcaggctgagatggaccaactatctccggccagacttgaagagaggtctgttatctgaacatgaagagaagatggtcattgatcttcatgcccaacttggaaacagatggtctaagattgcttctcatctccctggaagaactgataatgagatcaaaaatcactggaatacccacatcaagaagaagctgaaaaaaatggggattgatcctctcactcacaaaccacttcccaatggcaatgagattgaaaaccaatcccaacaaaagcaacatatacaaaatgatcaagagcaacagcaacaagaagaagaacaatcttgtacagctactgatgacacattcgaaattgaccaaatcaatgaggggggcaaagtcgaagacaaagttgaatttgtgacaatggatcatgatgatcatgagctcttgaatgggttctgcatagatgaagttccacttattgagccgcatgagattcatcttgttcctaattgtgctccttcttcatcaacttcatcttcttcatcttgttcaaattcatcctccaactttctcgaagacttgcaatatctaccagattttggatggccaaattgtgattacagcagcagcagcaacaacaacaacgacatcattatcaacaatgacaccatgggcttgtgggatgatgacttcagcagttggggccaagaatcctgggcgtttggggttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

290

Amino Acids

33.02

Weight (kDa)

5.07

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 737
AciI CCGC 1 cut(s) 623
AclWI GGATC 2 cut(s) 359, 570
AcoI YGGCCR 3 cut(s) 97, 185, 743
AcsI RAATTY 2 cut(s) 548, 691
AcuI CTGAAG 1 cut(s) 814
AfaI GTAC 2 cut(s) 120, 481
AfiI CCNNNNNNNGG 1 cut(s) 737
AgsI TTSAA 6 cut(s) 37, 196, 407, 548, 586, 690
AjnI CCWGG 2 cut(s) 289, 851
AluBI AGCT 7 cut(s) 73, 116, 127, 156, 346, 485, 580
AluI AGCT 7 cut(s) 73, 116, 127, 156, 346, 485, 580
Alw21I GWGCWC 2 cut(s) 582, 655
AlwI GGATC 2 cut(s) 359, 570
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 4 cut(s) 97, 185, 743, 841
ApeKI GCWGC 4 cut(s) 156, 762, 765, 768
ApoI RAATTY 2 cut(s) 548, 691
Asp700I GAANNNNTTC 1 cut(s) 590
AspS9I GGNCC 3 cut(s) 44, 171, 841
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 501
AvaII GGWCC 2 cut(s) 44, 171
BalI TGGCCA 2 cut(s) 99, 745
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 2 cut(s) 543, 720
Bbv12I GWGCWC 2 cut(s) 582, 655
BbvI GCAGC 4 cut(s) 143, 774, 777, 780
BccI CCATC 4 cut(s) 162, 223, 258, 735
BciT130I CCWGG 2 cut(s) 291, 853
BclI TGATCA 2 cut(s) 442, 571
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 5 cut(s) 157, 623, 763, 766, 769
BlsI GCNGC 5 cut(s) 158, 624, 764, 767, 770
Bme1390I CCNGG 2 cut(s) 291, 853
Bme18I GGWCC 2 cut(s) 44, 171
BmgT120I GGNCC 3 cut(s) 44, 171, 841
BmiI GGNNCC 2 cut(s) 45, 842
BmrFI CCNGG 2 cut(s) 291, 853
BpiI GAAGAC 2 cut(s) 543, 720
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 47, 289, 807, 852
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 291, 853
BseDI CCNNGG 4 cut(s) 47, 289, 807, 852
BseGI GGATG 4 cut(s) 84, 695, 746, 826
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 4 cut(s) 143, 774, 777, 780
BshFI GGCC 4 cut(s) 99, 187, 745, 843
BsiHKAI GWGCWC 2 cut(s) 582, 655
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 737
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 4 cut(s) 99, 187, 745, 843
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 582, 655
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 6 cut(s) 238, 309, 364, 442, 562, 571
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 1 cut(s) 623
BspANI GGCC 4 cut(s) 99, 187, 745, 843
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 2 cut(s) 565, 574
BspLI GGNNCC 2 cut(s) 45, 842
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 359, 570
BspT104I TTCGAA 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 47, 289, 807, 852
BssMI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
BssT1I CCWWGG 2 cut(s) 47, 807
Bst2UI CCWGG 2 cut(s) 291, 853
Bst6I CTCTTC 3 cut(s) 54, 191, 216
BstAUI TGTACA 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 129, 161
BstDEI CTNAG 3 cut(s) 123, 164, 270
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 4 cut(s) 84, 695, 746, 826
BstKTI GATC 6 cut(s) 241, 312, 367, 445, 565, 574
BstMBI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
BstMWI GCNNNNNNNGC 2 cut(s) 768, 840
BstNI CCWGG 2 cut(s) 291, 853
BstSCI CCNGG 2 cut(s) 289, 851
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 143, 774, 777, 780
BstV2I GAAGAC 2 cut(s) 543, 720
BsuRI GGCC 4 cut(s) 99, 187, 745, 843
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 4 cut(s) 84, 695, 746, 826
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 129, 161
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 2 cut(s) 565, 574
Cfr13I GGNCC 3 cut(s) 44, 171, 841
Csp6I GTAC 2 cut(s) 119, 480
CviAII CATG 7 cut(s) 15, 218, 245, 566, 575, 626, 808
CviQI GTAC 2 cut(s) 119, 480
DdeI CTNAG 3 cut(s) 123, 164, 270
DpnI GATC 6 cut(s) 240, 311, 366, 444, 564, 573
DpnII GATC 6 cut(s) 238, 309, 364, 442, 562, 571
EaeI YGGCCR 3 cut(s) 97, 185, 743
Eam1104I CTCTTC 3 cut(s) 54, 191, 216
EarI CTCTTC 3 cut(s) 54, 191, 216
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 47, 807
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 44, 171
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 814
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 289, 851
EcoT14I CCWWGG 2 cut(s) 47, 807
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 47, 807
FaeI CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 14, 217, 244, 565, 574, 625, 807
FbaI TGATCA 2 cut(s) 442, 571
Fnu4HI GCNGC 5 cut(s) 157, 623, 763, 766, 769
FokI GGATG 4 cut(s) 71, 682, 753, 833
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 157, 623, 763, 766, 769
GluI GCNGC 5 cut(s) 157, 623, 763, 766, 769
HaeIII GGCC 4 cut(s) 99, 187, 745, 843
HapII CCGG 1 cut(s) 184
Hin1II CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 631, 848
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 6 cut(s) 337, 446, 566, 575, 583, 710
HpyAV CCTTC 2 cut(s) 34, 666
HpyCH4V TGCA 4 cut(s) 131, 159, 597, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 768, 840
HpyF3I CTNAG 3 cut(s) 123, 164, 270
Hsp92II CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
Ksp22I TGATCA 2 cut(s) 442, 571
Kzo9I GATC 6 cut(s) 238, 309, 364, 442, 562, 571
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 4 cut(s) 143, 774, 777, 780
MaeIII GTNAC 1 cut(s) 553
MalI GATC 6 cut(s) 240, 311, 366, 444, 564, 573
MboI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
MhlI GDGCHC 2 cut(s) 582, 655
MlsI TGGCCA 2 cut(s) 99, 745
MluCI AATT 5 cut(s) 504, 548, 646, 691, 748
MluNI TGGCCA 2 cut(s) 99, 745
MmeI TCCRAC 2 cut(s) 89, 726
MnlI CCTC 6 cut(s) 55, 98, 194, 378, 514, 709
Mox20I TGGCCA 2 cut(s) 99, 745
MroXI GAANNNNTTC 1 cut(s) 590
MscI TGGCCA 2 cut(s) 99, 745
MseI TTAA 2 cut(s) 78, 140
Msp20I TGGCCA 2 cut(s) 99, 745
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 2 cut(s) 291, 853
MvaI CCWGG 2 cut(s) 291, 853
MwoI GCNNNNNNNGC 2 cut(s) 768, 840
NcoI CCATGG 1 cut(s) 807
NdeII GATC 6 cut(s) 238, 309, 364, 442, 562, 571
NlaIII CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 811
NlaIV GGNNCC 2 cut(s) 45, 842
NmuCI GTSAC 1 cut(s) 553
NspV TTCGAA 1 cut(s) 501
PagI TCATGA 2 cut(s) 565, 574
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 631, 848
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 5 cut(s) 158, 624, 764, 767, 770
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 289, 851
PspGI CCWGG 2 cut(s) 289, 851
PspN4I GGNNCC 2 cut(s) 45, 842
PspPI GGNCC 3 cut(s) 44, 171, 841
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 120, 481
RsaNI GTAC 2 cut(s) 119, 480
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 78, 140
SatI GCNGC 5 cut(s) 157, 623, 763, 766, 769
Sau3AI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
Sau96I GGNCC 3 cut(s) 44, 171, 841
ScrFI CCNGG 2 cut(s) 291, 853
SduI GDGCHC 2 cut(s) 582, 655
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 501
SinI GGWCC 2 cut(s) 44, 171
Sse9I AATT 5 cut(s) 504, 548, 646, 691, 748
SsiI CCGC 1 cut(s) 623
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 289, 851
StyI CCWWGG 2 cut(s) 47, 807
TaqI TCGA 3 cut(s) 501, 534, 711
TasI AATT 5 cut(s) 504, 548, 646, 691, 748
TatI WGTACW 1 cut(s) 479
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 2 cut(s) 631, 848
Tru1I TTAA 2 cut(s) 78, 140
Tru9I TTAA 2 cut(s) 78, 140
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 4 cut(s) 156, 762, 765, 768
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 9 cut(s) 73, 233, 234, 618, 623, 651, 660, 669, 684
TspRI CASTG 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 44, 171
XapI RAATTY 2 cut(s) 548, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.