pycom09g18240
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014421
Physical Location & Seq
Forward (+)
18827047 .. 18829305
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18240.2

Sequence Viewer

Length: 810 bp
ATGGGAAGGAAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGATAGCTGAAGAGGACACGAAGCTCATTAACTTCATCCTCGCCAATGGCCAATGCTGCTGGAGAGCTGTTCCTAAGCTTGCAGGATTATTAAGGTGTGGAAAAAGTTGCAGGTTGAGATGGACCAACTATCTGAGGCCAGACTTGAAGAGAGGTCTTTTATCAGAATATGAAGAGAAAATGGTGATCGATCTTCATGCTGAACTTGGCAACAGATGGTCCAAGATTGCCTCTCATCTCCCTGGAAGAACAGATAATGAGATAAAAAATCATTGGAACACCCACATCAAGAAGAAGTTGAGAAAAATCTTGATCGATCCCCTCACCCACAAACCAATTGCTAATGTCAATGACCAAAGCCAACAATCACAAAGTCAAAAGCAAGAAGGAGAAGAAGAACAATCCTGTGCAGCTAATGACAAATCTGAAATTGACCAAAATGCCCCTACTCAAGCCAGAGAGGAAGATTCCAAAAACACGGGAGGTGATGGATTGGATAAAATGGAGTTCTTGATTGATGGATTCTGCATAGATGAAGTTCCACTAATGGAGTTCTTGATTGATGGTGTTATTTCTTCTTCATCAAACTCTTCATCTTCTTGTTCAAATTCATCATCCAATTTTCTTGAAGAATTACACCTCCCAGATTTTGAGTGGCCTGATTGTGATTACAGCAACAACAGTAACAATGGCAGCATGGGCTTGTGGGATGATGACTTCAGCAGCTGGGGTCAAGAAGCTTGGGCATATGGGCTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

270

Amino Acids

30.36

Weight (kDa)

5.09

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 2 cut(s) 78, 751
AgsI TTSAA 4 cut(s) 37, 196, 654, 677
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 56, 73, 116, 127, 461, 774, 788
AluI AGCT 7 cut(s) 56, 73, 116, 127, 461, 774, 788
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 774
AoxI GGCC 3 cut(s) 97, 185, 704
ApeKI GCWGC 4 cut(s) 105, 458, 741, 771
ApoI RAATTY 1 cut(s) 655
AspS9I GGNCC 3 cut(s) 44, 171, 267
AsuHPI GGTGA 3 cut(s) 244, 364, 545
AvaII GGWCC 3 cut(s) 44, 171, 267
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 1 cut(s) 804
BbvI GCAGC 4 cut(s) 92, 470, 753, 783
BccI CCATC 5 cut(s) 162, 258, 530, 560, 605
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 4 cut(s) 106, 459, 742, 772
BlsI GCNGC 4 cut(s) 107, 460, 743, 773
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 3 cut(s) 44, 171, 267
BmgT120I GGNCC 3 cut(s) 44, 171, 267
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 483
Bsa29I ATCGAT 2 cut(s) 237, 363
BsaJI CCNNGG 2 cut(s) 47, 289
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 2 cut(s) 237, 363
BseDI CCNNGG 2 cut(s) 47, 289
BseGI GGATG 3 cut(s) 84, 662, 763
BseMII CTCAG 1 cut(s) 173
BseXI GCAGC 4 cut(s) 92, 470, 753, 783
BseYI CCCAGC 1 cut(s) 774
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 3 cut(s) 99, 187, 706
BshVI ATCGAT 2 cut(s) 237, 363
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 3 cut(s) 99, 187, 706
Bsp1286I GDGCHC 1 cut(s) 804
Bsp143I GATC 4 cut(s) 234, 238, 360, 364
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 3 cut(s) 99, 187, 706
BspCNI CTCAG 1 cut(s) 174
BspDI ATCGAT 2 cut(s) 237, 363
BspLI GGNNCC 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 47, 289
BssMI GATC 4 cut(s) 234, 238, 360, 364
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 731
Bst6I CTCTTC 4 cut(s) 54, 191, 216, 643
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 123, 182
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 84, 662, 763
BstKTI GATC 4 cut(s) 237, 241, 363, 367
BstMBI GATC 4 cut(s) 234, 238, 360, 364
BstMWI GCNNNNNNNGC 2 cut(s) 105, 747
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 4 cut(s) 92, 470, 753, 783
Bsu15I ATCGAT 2 cut(s) 237, 363
BsuRI GGCC 3 cut(s) 99, 187, 706
BsuTUI ATCGAT 2 cut(s) 237, 363
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 84, 662, 763
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 774
Cfr13I GGNCC 3 cut(s) 44, 171, 267
ClaI ATCGAT 2 cut(s) 237, 363
CviAII CATG 3 cut(s) 48, 245, 745
DdeI CTNAG 2 cut(s) 123, 182
DpnI GATC 4 cut(s) 236, 240, 362, 366
DpnII GATC 4 cut(s) 234, 238, 360, 364
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 4 cut(s) 54, 191, 216, 643
EarI CTCTTC 4 cut(s) 54, 191, 216, 643
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 804
Eco47I GGWCC 3 cut(s) 44, 171, 267
Eco57I CTGAAG 2 cut(s) 78, 751
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 3 cut(s) 51, 248, 748
FaiI YATR 7 cut(s) 49, 219, 246, 578, 746, 796, 798
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 47, 244, 744
FauNDI CATATG 1 cut(s) 796
Fnu4HI GCNGC 4 cut(s) 106, 459, 742, 772
FokI GGATG 3 cut(s) 71, 649, 770
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 4 cut(s) 106, 459, 742, 772
GluI GCNGC 4 cut(s) 106, 459, 742, 772
GsaI CCCAGC 1 cut(s) 778
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 99, 187, 706
Hin1II CATG 3 cut(s) 51, 248, 748
HindIII AAGCTT 2 cut(s) 125, 786
HinfI GANTC 2 cut(s) 515, 570
HphI GGTGA 3 cut(s) 244, 364, 545
Hpy188I TCNGA 3 cut(s) 183, 214, 475
Hpy188III TCNNGA 6 cut(s) 337, 358, 559, 604, 674, 782
HpyAV CCTTC 2 cut(s) 34, 428
HpyCH4III ACNGT 1 cut(s) 731
HpyCH4V TGCA 4 cut(s) 131, 159, 458, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 747
HpyF3I CTNAG 2 cut(s) 123, 182
Hsp92II CATG 3 cut(s) 51, 248, 748
Kzo9I GATC 4 cut(s) 234, 238, 360, 364
Lsp1109I GCAGC 4 cut(s) 92, 470, 753, 783
MaeIII GTNAC 2 cut(s) 20, 731
MalI GATC 4 cut(s) 236, 240, 362, 366
MboI GATC 4 cut(s) 234, 238, 360, 364
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 804
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 5 cut(s) 384, 477, 655, 667, 680
MluNI TGGCCA 1 cut(s) 99
MnlI CCTC 9 cut(s) 55, 98, 177, 194, 289, 380, 502, 524, 698
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 78, 140
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 774
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 105, 747
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 796
NdeII GATC 4 cut(s) 234, 238, 360, 364
NlaIII CATG 3 cut(s) 51, 248, 748
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 515, 570
PkrI GCNGC 4 cut(s) 107, 460, 743, 773
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 774
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 3 cut(s) 44, 171, 267
PstNI CAGNNNCTG 1 cut(s) 774
PvuII CAGCTG 1 cut(s) 774
SaqAI TTAA 2 cut(s) 78, 140
SatI GCNGC 4 cut(s) 106, 459, 742, 772
Sau3AI GATC 4 cut(s) 234, 238, 360, 364
Sau96I GGNCC 3 cut(s) 44, 171, 267
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 804
SinI GGWCC 3 cut(s) 44, 171, 267
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 5 cut(s) 384, 477, 655, 667, 680
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 731
TaqI TCGA 2 cut(s) 237, 363
TasI AATT 5 cut(s) 384, 477, 655, 667, 680
TfiI GAWTC 2 cut(s) 515, 570
Tru1I TTAA 2 cut(s) 78, 140
Tru9I TTAA 2 cut(s) 78, 140
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 4 cut(s) 105, 458, 741, 771
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 7 cut(s) 73, 233, 234, 597, 618, 630, 648
VpaK11BI GGWCC 3 cut(s) 44, 171, 267
XapI RAATTY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.