MD09G1271400.v1.1
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014421
Physical Location & Seq
Forward (+)
34570103 .. 34572449
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1271400.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGGAAGGAAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGACAGCTGAAGAGGACACGAAGCTCATTAACTTCATCCTCGCCAATGGCCAATGCTGCTGGAGAGCTGTTCCTAAGCTTGCAGGATTATTAAGGTGTGGAAAAAGTTGCAGGTTGAGATGGACCAACTATCTGAGGCCAGACTTGAAGAGAGGTCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTGAACTTGGCAACAGGTGGTCTAAGATTGTCTCTCATCTCCCTGGAAGAACAGATAATGAGATAAAAAATCATTGGAACACCCACATCAAGAAGAAGTTGAGAAAAATGGGGATTGATCCTCTCACCCACAAACCAATTGTTAATGTCAATGACCAAAGCCAACAATCACAAAGTCAAAAGCAAGAAGGAGGAGAAGAACAATCTTGTGCAGTTAATGACAAATTTGAAATTGACCAAAATGCCCCTACTCAAGCCAAAGAGGAAGATTCCAAAAACATGGAAGGTGATGGATTGGATAAAATGGAGTTCTTGATTGATGGATTCTGCATAGATGATGTTCCACTAATTGAGCCCCATGAGATTTTAGTTCCTGGTGTTCCTCCTTCTTCATCAACCTCTACATCTTCTTGTTCAAATTCATTATCCAATTTTCTTGAAGAATTGCATCTCCCAGATTTTGAGTGGCCTGACAGTGATTACAGCAACAACAACAGTAACAATGACAGCATGGGCTTGTGGGATGATGACTTCAGCAGCTGGGGTCAAGAATCTTGGGCATATGGGCTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

274

Amino Acids

30.91

Weight (kDa)

5.09

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 5.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 5e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 118 1.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 470, 664
AcuI CTGAAG 2 cut(s) 78, 763
AgsI TTSAA 5 cut(s) 37, 196, 476, 663, 686
AjnI CCWGG 2 cut(s) 289, 619
AluBI AGCT 5 cut(s) 56, 73, 116, 127, 786
AluI AGCT 5 cut(s) 56, 73, 116, 127, 786
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 786
AoxI GGCC 3 cut(s) 97, 185, 713
ApeKI GCWGC 2 cut(s) 105, 783
ApoI RAATTY 2 cut(s) 470, 664
AspS9I GGNCC 2 cut(s) 44, 171
AsuHPI GGTGA 2 cut(s) 364, 545
AvaII GGWCC 2 cut(s) 44, 171
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 2 cut(s) 603, 816
BbvI GCAGC 2 cut(s) 92, 795
BccI CCATC 3 cut(s) 162, 530, 560
BciT130I CCWGG 2 cut(s) 291, 621
BcoDI GTCTC 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 2 cut(s) 106, 784
BlsI GCNGC 2 cut(s) 107, 785
Bme1390I CCNGG 2 cut(s) 291, 621
Bme18I GGWCC 2 cut(s) 44, 171
BmgT120I GGNCC 2 cut(s) 44, 171
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 291, 621
BmsI GCATC 1 cut(s) 703
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 47, 289
BseBI CCWGG 2 cut(s) 291, 621
BseDI CCNNGG 2 cut(s) 47, 289
BseGI GGATG 2 cut(s) 84, 775
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 2 cut(s) 92, 795
BseYI CCCAGC 1 cut(s) 786
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 3 cut(s) 99, 187, 715
BslFI GGGAC 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 3 cut(s) 99, 187, 715
Bsp1286I GDGCHC 2 cut(s) 603, 816
Bsp143I GATC 2 cut(s) 238, 364
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 3 cut(s) 99, 187, 715
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 47, 289
BssMI GATC 2 cut(s) 238, 364
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 291, 621
Bst4CI ACNGT 2 cut(s) 722, 743
Bst6I CTCTTC 3 cut(s) 54, 191, 216
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 123, 182, 270
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 84, 775
BstKTI GATC 2 cut(s) 241, 367
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 238, 364
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 2 cut(s) 291, 621
BstSCI CCNGG 2 cut(s) 289, 619
BstV1I GCAGC 2 cut(s) 92, 795
BstXI CCANNNNNNTGG 1 cut(s) 526
BsuRI GGCC 3 cut(s) 99, 187, 715
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 84, 775
BtsIMutI CAGTG 1 cut(s) 727
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 786
Cfr13I GGNCC 2 cut(s) 44, 171
CviAII CATG 5 cut(s) 48, 245, 526, 605, 757
DdeI CTNAG 3 cut(s) 123, 182, 270
DpnI GATC 2 cut(s) 240, 366
DpnII GATC 2 cut(s) 238, 364
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 54, 191, 216
EarI CTCTTC 3 cut(s) 54, 191, 216
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 603, 816
Eco47I GGWCC 2 cut(s) 44, 171
Eco57I CTGAAG 2 cut(s) 78, 763
EcoRII CCWGG 2 cut(s) 289, 619
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 603, 816
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 51, 248, 529, 608, 760
FaiI YATR 9 cut(s) 49, 219, 246, 527, 578, 606, 758, 808, 810
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 57
FatI CATG 5 cut(s) 47, 244, 525, 604, 756
FauNDI CATATG 1 cut(s) 808
Fnu4HI GCNGC 2 cut(s) 106, 784
FokI GGATG 2 cut(s) 71, 782
FriOI GRGCYC 2 cut(s) 603, 816
Fsp4HI GCNGC 2 cut(s) 106, 784
GluI GCNGC 2 cut(s) 106, 784
GsaI CCCAGC 1 cut(s) 790
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 99, 187, 715
Hin1II CATG 5 cut(s) 51, 248, 529, 608, 760
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 515, 570, 797
HphI GGTGA 2 cut(s) 364, 545
Hpy188I TCNGA 2 cut(s) 183, 214
Hpy188III TCNNGA 4 cut(s) 337, 559, 683, 794
HpyAV CCTTC 4 cut(s) 34, 428, 524, 642
HpyCH4III ACNGT 2 cut(s) 722, 743
HpyCH4V TGCA 5 cut(s) 131, 159, 458, 576, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 3 cut(s) 123, 182, 270
Hsp92II CATG 5 cut(s) 51, 248, 529, 608, 760
Kzo9I GATC 2 cut(s) 238, 364
Lsp1109I GCAGC 2 cut(s) 92, 795
LweI GCATC 1 cut(s) 703
MaeIII GTNAC 2 cut(s) 20, 743
MalI GATC 2 cut(s) 240, 366
MboI GATC 2 cut(s) 238, 364
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 2 cut(s) 603, 816
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 384, 470, 477, 594, 664, 676, 689
MluNI TGGCCA 1 cut(s) 99
MnlI CCTC 9 cut(s) 55, 98, 177, 194, 378, 431, 502, 639, 655
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 4 cut(s) 78, 140, 390, 462
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 56, 786
MspR9I CCNGG 2 cut(s) 291, 621
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 2 cut(s) 291, 621
MwoI GCNNNNNNNGC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 808
NdeII GATC 2 cut(s) 238, 364
NlaIII CATG 5 cut(s) 51, 248, 529, 608, 760
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 20
PfeI GAWTC 3 cut(s) 515, 570, 797
PkrI GCNGC 2 cut(s) 107, 785
Psp6I CCWGG 2 cut(s) 289, 619
PspFI CCCAGC 1 cut(s) 786
PspGI CCWGG 2 cut(s) 289, 619
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 44, 171
PstNI CAGNNNCTG 1 cut(s) 786
PvuII CAGCTG 2 cut(s) 56, 786
SaqAI TTAA 4 cut(s) 78, 140, 390, 462
SatI GCNGC 2 cut(s) 106, 784
Sau3AI GATC 2 cut(s) 238, 364
Sau96I GGNCC 2 cut(s) 44, 171
ScrFI CCNGG 2 cut(s) 291, 621
SduI GDGCHC 2 cut(s) 603, 816
SfaNI GCATC 1 cut(s) 703
SinI GGWCC 2 cut(s) 44, 171
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
Sse9I AATT 7 cut(s) 384, 470, 477, 594, 664, 676, 689
StyD4I CCNGG 2 cut(s) 289, 619
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 722, 743
TasI AATT 7 cut(s) 384, 470, 477, 594, 664, 676, 689
TfiI GAWTC 3 cut(s) 515, 570, 797
Tru1I TTAA 4 cut(s) 78, 140, 390, 462
Tru9I TTAA 4 cut(s) 78, 140, 390, 462
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 105, 783
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 73, 233, 234, 627, 657
TspRI CASTG 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 44, 171
XapI RAATTY 2 cut(s) 470, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.