RLG00000022867
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014421
Physical Location & Seq
Forward (+)
13651597 .. 13653220
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022867

Sequence Viewer

Length: 870 bp
ATGGGGAGGCAACCATGTTGTGATAAGGTTGGGTTGAAGAAGGGACCTTGGACAGCCGAAGAGGACAAGAAGCTCATTAACTTCATCCTCACCAATGGCCAATGCTGTTGGAGAGCTGTACCTAAGCTTGCAGGATTGTTACGGTGTGGAAAAAGCTGCAGGCTGAGATGGACCAACTATCTCAGGCCAGACTTGAAGAGAGGTCTGTTATCTGAACATGAAGAGAAGATGGTCATTGATCTTCATGCCCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAAAATCACTGGAATACCCACATCAAGAAGAAGCTGAAAAAAATGGGGATTGATCCTCTCACTCACAAACCACTTCCCAATGGCAATGAGATTGAAAACCAATCGCAACAAAAGCAACATATACAAAATGATCAAGAGCAACAGCAACAAGAAGAAGAACAACCTTGTACAGCTACTGATGACACATTTGAAATTGACAAAATCAATGAGGAGGCCAAAGTGGAAGACAAAGTTGAATTTGCGACAATGGATCATGATGATCATGAGCTCTTGAATGGGTTCTGCATAGATGAAGTTCCACTTATTGAGCCTCATGAGATTCATCTTGTTCCTAATTGTGCTCCTTCTTCGTCAGCTTCATCTTCTTCATCTTGTTCAAATTCATCCTCCAACTTTCTCGAAGACTTGCAATATCTACCAGATTTTGAGTGGCCAAATTGTGATTACAGCAGCAGCAGCAGCAACAACAACAACATTATCAACAATGACACCATGGGCTTGTGGGATGATGACTTTAGCAGTTGGGGCCAAGAATCTTGGGCATTTGGGGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

290

Amino Acids

33.01

Weight (kDa)

5.09

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.6e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 118 6.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 359, 570
AcoI YGGCCR 2 cut(s) 97, 743
AcsI RAATTY 2 cut(s) 548, 691
AfaI GTAC 2 cut(s) 120, 481
AgsI TTSAA 7 cut(s) 37, 196, 407, 503, 548, 586, 690
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 8 cut(s) 73, 116, 127, 156, 346, 485, 580, 668
AluI AGCT 8 cut(s) 73, 116, 127, 156, 346, 485, 580, 668
Alw21I GWGCWC 2 cut(s) 582, 655
AlwI GGATC 2 cut(s) 359, 570
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 5 cut(s) 97, 185, 525, 743, 838
ApeKI GCWGC 5 cut(s) 156, 762, 765, 768, 771
ApoI RAATTY 2 cut(s) 548, 691
Asp700I GAANNNNTTC 1 cut(s) 590
AspS9I GGNCC 3 cut(s) 44, 171, 838
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 44, 171
BalI TGGCCA 2 cut(s) 99, 745
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 2 cut(s) 543, 720
Bbv12I GWGCWC 2 cut(s) 582, 655
BbvI GCAGC 5 cut(s) 143, 774, 777, 780, 783
BccI CCATC 3 cut(s) 162, 223, 258
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 442, 571
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 5 cut(s) 157, 763, 766, 769, 772
BlsI GCNGC 5 cut(s) 158, 764, 767, 770, 773
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 44, 171
BmgT120I GGNCC 3 cut(s) 44, 171, 838
BmiI GGNNCC 2 cut(s) 45, 839
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 543, 720
Bpu10I CCTNAGC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 47, 289, 804
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 47, 289, 804
BseGI GGATG 3 cut(s) 84, 695, 823
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 155, 196
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 5 cut(s) 143, 774, 777, 780, 783
BshFI GGCC 5 cut(s) 99, 187, 527, 745, 840
BsiHKAI GWGCWC 2 cut(s) 582, 655
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 5 cut(s) 99, 187, 527, 745, 840
Bsp1286I GDGCHC 2 cut(s) 582, 655
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 6 cut(s) 238, 309, 364, 442, 562, 571
Bsp19I CCATGG 1 cut(s) 804
BspANI GGCC 5 cut(s) 99, 187, 527, 745, 840
BspCNI CTCAG 2 cut(s) 156, 195
BspHI TCATGA 3 cut(s) 565, 574, 625
BspLI GGNNCC 2 cut(s) 45, 839
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 359, 570
BsrDI GCAATG 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 47, 289, 804
BssMI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
BssT1I CCWWGG 2 cut(s) 47, 804
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 3 cut(s) 54, 191, 216
BstAUI TGTACA 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 129, 161
BstDEI CTNAG 4 cut(s) 123, 164, 182, 270
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 3 cut(s) 84, 695, 823
BstKTI GATC 6 cut(s) 241, 312, 367, 445, 565, 574
BstMBI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
BstMWI GCNNNNNNNGC 4 cut(s) 424, 768, 771, 837
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 5 cut(s) 143, 774, 777, 780, 783
BstV2I GAAGAC 2 cut(s) 543, 720
BsuRI GGCC 5 cut(s) 99, 187, 527, 745, 840
BtgI CCRYGG 1 cut(s) 804
BtsCI GGATG 3 cut(s) 84, 695, 823
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 129, 161
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 3 cut(s) 565, 574, 625
Cfr13I GGNCC 3 cut(s) 44, 171, 838
Csp6I GTAC 2 cut(s) 119, 480
CviAII CATG 7 cut(s) 15, 218, 245, 566, 575, 626, 805
CviQI GTAC 2 cut(s) 119, 480
DdeI CTNAG 4 cut(s) 123, 164, 182, 270
DpnI GATC 6 cut(s) 240, 311, 366, 444, 564, 573
DpnII GATC 6 cut(s) 238, 309, 364, 442, 562, 571
EaeI YGGCCR 2 cut(s) 97, 743
Eam1104I CTCTTC 3 cut(s) 54, 191, 216
EarI CTCTTC 3 cut(s) 54, 191, 216
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 47, 804
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 44, 171
Eco53kI GAGCTC 1 cut(s) 580
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 47, 804
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 47, 804
FaeI CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 808
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 14, 217, 244, 565, 574, 625, 804
FbaI TGATCA 2 cut(s) 442, 571
Fnu4HI GCNGC 5 cut(s) 157, 763, 766, 769, 772
FokI GGATG 3 cut(s) 71, 682, 830
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 157, 763, 766, 769, 772
GluI GCNGC 5 cut(s) 157, 763, 766, 769, 772
HaeIII GGCC 5 cut(s) 99, 187, 527, 745, 840
Hin1II CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 808
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 631, 845
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 7 cut(s) 337, 446, 566, 575, 583, 626, 710
HpyAV CCTTC 2 cut(s) 34, 666
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 4 cut(s) 131, 159, 597, 721
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 768, 771, 837
HpyF3I CTNAG 4 cut(s) 123, 164, 182, 270
Hsp92II CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 808
Ksp22I TGATCA 2 cut(s) 442, 571
Kzo9I GATC 6 cut(s) 238, 309, 364, 442, 562, 571
LmnI GCTCC 1 cut(s) 658
LpnPI CCDG 8 cut(s) 117, 145, 169, 201, 276, 303, 307, 744
Lsp1109I GCAGC 5 cut(s) 143, 774, 777, 780, 783
MaeIII GTNAC 1 cut(s) 138
MalI GATC 6 cut(s) 240, 311, 366, 444, 564, 573
MboI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
MhlI GDGCHC 2 cut(s) 582, 655
MlsI TGGCCA 2 cut(s) 99, 745
MluCI AATT 5 cut(s) 504, 548, 646, 691, 748
MluNI TGGCCA 2 cut(s) 99, 745
MmeI TCCRAC 2 cut(s) 89, 726
MnlI CCTC 8 cut(s) 55, 98, 194, 378, 514, 517, 633, 709
Mox20I TGGCCA 2 cut(s) 99, 745
MroXI GAANNNNTTC 1 cut(s) 590
MscI TGGCCA 2 cut(s) 99, 745
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 2 cut(s) 99, 745
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 424, 768, 771, 837
NcoI CCATGG 1 cut(s) 804
NdeII GATC 6 cut(s) 238, 309, 364, 442, 562, 571
NlaIII CATG 7 cut(s) 18, 221, 248, 569, 578, 629, 808
NlaIV GGNNCC 2 cut(s) 45, 839
PagI TCATGA 3 cut(s) 565, 574, 625
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 631, 845
PkrI GCNGC 5 cut(s) 158, 764, 767, 770, 773
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 45, 839
PspPI GGNCC 3 cut(s) 44, 171, 838
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 120, 481
RsaNI GTAC 2 cut(s) 119, 480
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 5 cut(s) 157, 763, 766, 769, 772
Sau3AI GATC 6 cut(s) 238, 309, 364, 442, 562, 571
Sau96I GGNCC 3 cut(s) 44, 171, 838
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 582, 655
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 2 cut(s) 44, 171
Sse9I AATT 5 cut(s) 504, 548, 646, 691, 748
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 47, 804
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 711
TasI AATT 5 cut(s) 504, 548, 646, 691, 748
TatI WGTACW 1 cut(s) 479
TfiI GAWTC 2 cut(s) 631, 845
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 326
TseI GCWGC 5 cut(s) 156, 762, 765, 768, 771
TspDTI ATGAA 8 cut(s) 73, 233, 234, 618, 623, 660, 669, 684
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 44, 171
XapI RAATTY 2 cut(s) 548, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.