Rroxscaffold_6G00393250
MYB Family

ODORANT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014421
Physical Location & Seq
Forward (+)
13145641 .. 13147483
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393250.1

Sequence Viewer

Length: 894 bp
ATGGGGAGGCAACCATGTTGTGATAAGGTTGGGTTGAAGAAGGGACCTTGGACAGCCGAAGAGGACAAGAAGCTCATTAACTTCATCCTCACCAATGGCCAATGCTGTTGGAGAGCTGTACCTAAGCTTGCAGTTCTGGCTGGTGGGTGTCATTGCAGGATTGTTACGGTGTGGAAAAGCTGCAGGCTGAGATGGACCAACTATCTCAGGCCAGACTTGAAGAGAGGTCTGTTATCTGAACATGAAGAGAAGATGGTCATTGATCTTCATGCCCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAAAATCACTGGAATACCCACATCAAGAAGAAGCTGAAAAAAATGGGGATTGATCCTCTCACTCACAAACCACTTCCCAATGGCAATGAGATTGAAAACCAATCCCAACAAAAGCAACATATACAAAATGATCAAGAGCAACAGCAACAAGAAGAAGAACAATCTTGTACAGCTACTGATGACACATTCGAAATTGACCAAATCAATGAGGGGGCCAAAGTCGAAGACAAAGTTGAATTTGTGACAATGGATCATGATGATCATGAGCTCTTGAATGGGTTCTGCATAGATGAAGTTCCACTTATTGAGCCTCATGAGATTCATCTTGTTCCTAGTTGTGCTCCTTCTTCATCAACTTCATCTTCTTCATCTTGTTCAAATTCATCCTCCAACTTTCTCGAAGACTTGCAATATCTACCAGATTTTGAGTGGCCAAATTGTGATTACAGCAGCAGCAGCAACAACAACAACAACATTATCAACAATGACACCATGGGCTTGTGGGATGATGACTTTAGCAGTTGGGGCCAAGAATCTTGGGCATTTGGGGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.86

Weight (kDa)

5.14

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 69 1.2e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 79 - 119 4.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 79 - 126 7.2e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66230
fragaria_vesca FvH4_1g30290
malus_domestica MD00G1116400.v1.1 MD09G1271400.v1.1
prunus_persica Prupe.3G017100_v2.0.a1
pyrus_communis pycom09g18240 pycom17g26820
rosa_chinensis RchiOBHm_Chr3g0491061
rosa_laevigata RLG00000022867
rosa_multiflora Rmu_sc0005038.1_g000005 Rmu_ssc0000386.1_g000051
rosa_roxburghii Rroxscaffold_6G00393250
rosa_rugosa Rorug03G0245700
rosa_samantha Rh3AG296000 Rh3CG329100 Rh3DG329700
rosa_wichuraiana Rw3G026120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 383, 594
AcoI YGGCCR 2 cut(s) 97, 767
AcsI RAATTY 2 cut(s) 572, 715
AfaI GTAC 2 cut(s) 120, 505
AgsI TTSAA 6 cut(s) 37, 220, 431, 572, 610, 714
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 7 cut(s) 73, 116, 127, 180, 370, 509, 604
AluI AGCT 7 cut(s) 73, 116, 127, 180, 370, 509, 604
Alw21I GWGCWC 2 cut(s) 606, 679
AlwI GGATC 2 cut(s) 383, 594
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 5 cut(s) 97, 209, 549, 767, 862
ApeKI GCWGC 4 cut(s) 180, 786, 789, 792
ApoI RAATTY 2 cut(s) 572, 715
Asp700I GAANNNNTTC 1 cut(s) 614
AspS9I GGNCC 4 cut(s) 44, 195, 549, 862
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 525
AvaII GGWCC 2 cut(s) 44, 195
BalI TGGCCA 2 cut(s) 99, 769
BanII GRGCYC 1 cut(s) 606
BbsI GAAGAC 2 cut(s) 567, 744
Bbv12I GWGCWC 2 cut(s) 606, 679
BbvI GCAGC 4 cut(s) 167, 798, 801, 804
BccI CCATC 3 cut(s) 186, 247, 282
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 2 cut(s) 466, 595
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 4 cut(s) 181, 787, 790, 793
BlsI GCNGC 4 cut(s) 182, 788, 791, 794
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 44, 195
BmgT120I GGNCC 4 cut(s) 44, 195, 549, 862
BmiI GGNNCC 3 cut(s) 45, 550, 863
BmrFI CCNGG 1 cut(s) 315
BpiI GAAGAC 2 cut(s) 567, 744
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 525
BsaJI CCNNGG 3 cut(s) 47, 313, 828
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 2 cut(s) 151, 427
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 47, 313, 828
BseGI GGATG 3 cut(s) 84, 719, 847
BseMI GCAATG 2 cut(s) 151, 427
BseMII CTCAG 2 cut(s) 179, 220
BseNI ACTGG 1 cut(s) 350
BseXI GCAGC 4 cut(s) 167, 798, 801, 804
BshFI GGCC 5 cut(s) 99, 211, 551, 769, 864
BsiHKAI GWGCWC 2 cut(s) 606, 679
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 5 cut(s) 99, 211, 551, 769, 864
Bsp119I TTCGAA 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 606, 679
Bsp1407I TGTACA 1 cut(s) 503
Bsp143I GATC 6 cut(s) 262, 333, 388, 466, 586, 595
Bsp19I CCATGG 1 cut(s) 828
BspANI GGCC 5 cut(s) 99, 211, 551, 769, 864
BspCNI CTCAG 2 cut(s) 180, 219
BspHI TCATGA 3 cut(s) 589, 598, 649
BspLI GGNNCC 3 cut(s) 45, 550, 863
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 2 cut(s) 383, 594
BspT104I TTCGAA 1 cut(s) 525
BsrDI GCAATG 2 cut(s) 151, 427
BsrGI TGTACA 1 cut(s) 503
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 3 cut(s) 47, 313, 828
BssMI GATC 6 cut(s) 262, 333, 388, 466, 586, 595
BssT1I CCWWGG 2 cut(s) 47, 828
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 3 cut(s) 54, 215, 240
BstAUI TGTACA 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 129, 185
BstDEI CTNAG 4 cut(s) 123, 188, 206, 294
BstDSI CCRYGG 1 cut(s) 828
BstF5I GGATG 3 cut(s) 84, 719, 847
BstKTI GATC 6 cut(s) 265, 336, 391, 469, 589, 598
BstMBI GATC 6 cut(s) 262, 333, 388, 466, 586, 595
BstMWI GCNNNNNNNGC 3 cut(s) 137, 792, 861
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 4 cut(s) 167, 798, 801, 804
BstV2I GAAGAC 2 cut(s) 567, 744
BsuRI GGCC 5 cut(s) 99, 211, 551, 769, 864
BtgI CCRYGG 1 cut(s) 828
BtsCI GGATG 3 cut(s) 84, 719, 847
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 129, 185
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 3 cut(s) 589, 598, 649
Cfr13I GGNCC 4 cut(s) 44, 195, 549, 862
Csp6I GTAC 2 cut(s) 119, 504
CviAII CATG 7 cut(s) 15, 242, 269, 590, 599, 650, 829
CviQI GTAC 2 cut(s) 119, 504
DdeI CTNAG 4 cut(s) 123, 188, 206, 294
DpnI GATC 6 cut(s) 264, 335, 390, 468, 588, 597
DpnII GATC 6 cut(s) 262, 333, 388, 466, 586, 595
EaeI YGGCCR 2 cut(s) 97, 767
Eam1104I CTCTTC 3 cut(s) 54, 215, 240
EarI CTCTTC 3 cut(s) 54, 215, 240
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 2 cut(s) 47, 828
Eco24I GRGCYC 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 44, 195
Eco53kI GAGCTC 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 47, 828
EcoT38I GRGCYC 1 cut(s) 606
ErhI CCWWGG 2 cut(s) 47, 828
FaeI CATG 7 cut(s) 18, 245, 272, 593, 602, 653, 832
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FaqI GGGAC 1 cut(s) 57
FatI CATG 7 cut(s) 14, 241, 268, 589, 598, 649, 828
FbaI TGATCA 2 cut(s) 466, 595
Fnu4HI GCNGC 4 cut(s) 181, 787, 790, 793
FokI GGATG 3 cut(s) 71, 706, 854
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 4 cut(s) 181, 787, 790, 793
FspBI CTAG 1 cut(s) 669
GluI GCNGC 4 cut(s) 181, 787, 790, 793
HaeIII GGCC 5 cut(s) 99, 211, 551, 769, 864
Hin1II CATG 7 cut(s) 18, 245, 272, 593, 602, 653, 832
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 655, 869
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 7 cut(s) 361, 470, 590, 599, 607, 650, 734
HpyAV CCTTC 2 cut(s) 34, 690
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 5 cut(s) 131, 156, 183, 621, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 792, 861
HpyF3I CTNAG 4 cut(s) 123, 188, 206, 294
Hsp92II CATG 7 cut(s) 18, 245, 272, 593, 602, 653, 832
Ksp22I TGATCA 2 cut(s) 466, 595
Kzo9I GATC 6 cut(s) 262, 333, 388, 466, 586, 595
LmnI GCTCC 1 cut(s) 682
Lsp1109I GCAGC 4 cut(s) 167, 798, 801, 804
MaeI CTAG 1 cut(s) 669
MaeIII GTNAC 2 cut(s) 163, 577
MalI GATC 6 cut(s) 264, 335, 390, 468, 588, 597
MboI GATC 6 cut(s) 262, 333, 388, 466, 586, 595
MhlI GDGCHC 2 cut(s) 606, 679
MlsI TGGCCA 2 cut(s) 99, 769
MluCI AATT 4 cut(s) 528, 572, 715, 772
MluNI TGGCCA 2 cut(s) 99, 769
MmeI TCCRAC 2 cut(s) 89, 750
MnlI CCTC 7 cut(s) 55, 98, 218, 402, 538, 657, 733
Mox20I TGGCCA 2 cut(s) 99, 769
MroXI GAANNNNTTC 1 cut(s) 614
MscI TGGCCA 2 cut(s) 99, 769
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 2 cut(s) 99, 769
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 137, 792, 861
NcoI CCATGG 1 cut(s) 828
NdeII GATC 6 cut(s) 262, 333, 388, 466, 586, 595
NlaIII CATG 7 cut(s) 18, 245, 272, 593, 602, 653, 832
NlaIV GGNNCC 3 cut(s) 45, 550, 863
NmuCI GTSAC 1 cut(s) 577
NspV TTCGAA 1 cut(s) 525
PagI TCATGA 3 cut(s) 589, 598, 649
PdmI GAANNNNTTC 1 cut(s) 614
PfeI GAWTC 2 cut(s) 655, 869
PkrI GCNGC 4 cut(s) 182, 788, 791, 794
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 45, 550, 863
PspPI GGNCC 4 cut(s) 44, 195, 549, 862
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 120, 505
RsaNI GTAC 2 cut(s) 119, 504
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 4 cut(s) 181, 787, 790, 793
Sau3AI GATC 6 cut(s) 262, 333, 388, 466, 586, 595
Sau96I GGNCC 4 cut(s) 44, 195, 549, 862
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 606, 679
SfcI CTRYAG 1 cut(s) 181
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 2 cut(s) 44, 195
Sse9I AATT 4 cut(s) 528, 572, 715, 772
SspMI CTAG 1 cut(s) 669
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 47, 828
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 3 cut(s) 525, 558, 735
TasI AATT 4 cut(s) 528, 572, 715, 772
TatI WGTACW 1 cut(s) 503
TfiI GAWTC 2 cut(s) 655, 869
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 4 cut(s) 180, 786, 789, 792
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 9 cut(s) 73, 257, 258, 642, 647, 675, 684, 693, 708
TspRI CASTG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 44, 195
XapI RAATTY 2 cut(s) 572, 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 614
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.