Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

222404 .. 227670

Gene Structure 5267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00120.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGCGACAGTATTAGGAGTTTAGGAGCGAACGCCAACCTGGTGAGCCTGTGCCTGGCGACGACGAGGAAGTACAACAACAACAAGGTGTATTTCTCTTGCACCACCGCCTCCGCCTCCCACTGCTGCTTGGTGGCCCACGCCCACCATCATCCTTCAAGAGTCCAGGACGATCTCCCCTCATTGTTGCAGATTCTTCCGCATGATTTACATGACCATCTCCTCAATGAGTCCAGGAGGTCTCAACTCTTAGAGGTGATATTGGATTTAGGTCGCTTTCCGGAAGCACGCTATGTTGGTGAACCTGGTGGGCAATATCTCAGGACAACTGTGGTTTCACTGCAAGAGTTGGAGCATGCTCAAGAAGCTGTTCGAGATTTTGGAGGTGACAACAGAGCTGGCATTGAGGGTACGTTGCATAGAATTTCCGCTATTAGGAGTAGGAATGGAATGATTGTGGGATTGACTTGCCGAGTCGGAAGGGCAGTCAGTGGTCACAGTGACATGGTTTTTGATCTGCTTCAATATGGGAAGAGCATCTTGTTTGTTGGAAAGCCTGGGGTTGGCAAGACCACTATTTTGCGAGAAATTGCTCGAGTTTTGTCAGACGAATTTCACAAAAGAGTGGTTATTGTAGACACAAGCAATGAAATAGCAGGGGATGGAAATATTCCACATGCAGCAATAGGAGGTGCTCGGAGAATGCAGGTTGCAGAACCATCCATGCAATACAAAGTCATGATAGAGGCTGTGGAGAATCACATGCCTGAGGTCATCATTGTTGATGAGATTGGCACGGAAACCGAAGCTCTTGCATGCCGCTCAATTGCTCAGAGAGGGGTCATGCTTATTGCTACTGCTCATGGACAGCAGATTGAGAATATAATAAAGAATCCTACTCTATCTGACCTGATTGGAGGAGTAAAAACTGTTACTTTAGGGGATGAAGAAGCCAAAGCTAGAAAACGCCTGAAAACCATTCTTGAGAGGCAAGCGGCTCCAACATTTGAATTTTTGATTGAGATGAGACACAGACACTATTGGGTTACCCATCAGACAGAAAAGAGTGTAGATATGTTGCTTCGTGGCAAAAGTCCACAAGTTGAGGTCAGGACAAGGGATGACAGCTTGAAGGTTGTAATTGAAAGATCAAAGGCATATGATAAATGTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

393

Amino Acids

43.49

Weight (kDa)

7.31

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	150 - 306	2.5e-14	Sporulation stage III, protein AA
AAA	PF00004	180 - 265	2e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	697
AccBSI	CCGCTC	1 cut(s)	822
AccI	GTMKAC	1 cut(s)	636
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	6 cut(s)	108, 114, 200, 429, 820, 995
AcsI	RAATTY	3 cut(s)	423, 611, 1010
AfaI	GTAC	2 cut(s)	74, 412
AfiI	CCNNNNNNNGG	3 cut(s)	55, 435, 563
AgsI	TTSAA	5 cut(s)	159, 524, 1010, 1132, 1145
AjnI	CCWGG	6 cut(s)	39, 54, 165, 233, 304, 556
AluBI	AGCT	5 cut(s)	368, 398, 809, 959, 1128
AluI	AGCT	5 cut(s)	368, 398, 809, 959, 1128
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	246, 1021
Ama87I	CYCGRG	1 cut(s)	594
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	126, 680
ApoI	RAATTY	3 cut(s)	423, 611, 1010
ArsI	GACNNNNNNTTYG	4 cut(s)	494, 526, 562, 594
Asp700I	GAANNNNTTC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	4 cut(s)	55, 268, 311, 398
AvaI	CYCGRG	1 cut(s)	594
AxyI	CCTNAGG	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	2 cut(s)	113, 692
BccI	CCATC	5 cut(s)	156, 225, 656, 727, 1059
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	6 cut(s)	41, 56, 167, 235, 306, 558
BcoDI	GTCTC	2 cut(s)	246, 1021
BfaI	CTAG	1 cut(s)	960
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	4 cut(s)	127, 681, 820, 996
BlsI	GCNGC	4 cut(s)	128, 682, 821, 997
Bme1390I	CCNGG	6 cut(s)	41, 56, 167, 235, 306, 558
BmeT110I	CYCGRG	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	999
BmrFI	CCNGG	6 cut(s)	41, 56, 167, 235, 306, 558
BmsI	GCATC	2 cut(s)	546, 1162
BpuEI	CTTGAG	2 cut(s)	345, 1004
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	557
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 435, 563
Bse21I	CCTNAGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	6 cut(s)	41, 56, 167, 235, 306, 558
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	5 cut(s)	151, 667, 719, 949, 1126
BseLI	CCNNNNNNNGG	3 cut(s)	55, 435, 563
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	3 cut(s)	334, 759, 845
BseRI	GAGGAG	2 cut(s)	212, 933
BseXI	GCAGC	2 cut(s)	113, 692
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	55, 435, 563
BsmAI	GTCTC	2 cut(s)	246, 1021
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	172, 514, 1148
BspACI	CCGC	6 cut(s)	108, 114, 200, 429, 820, 995
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	3 cut(s)	333, 760, 844
BspEI	TCCGGA	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	1 cut(s)	999
BspMI	ACCTGC	1 cut(s)	697
BspQI	GCTCTTC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	246
BsrBI	CCGCTC	1 cut(s)	822
BsrDI	GCAATG	1 cut(s)	652
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	3 cut(s)	172, 514, 1148
Bst2UI	CCWGG	6 cut(s)	41, 56, 167, 235, 306, 558
Bst4CI	ACNGT	4 cut(s)	11, 331, 500, 931
Bst6I	CTCTTC	1 cut(s)	527
BstC8I	GCNNGC	5 cut(s)	289, 357, 400, 817, 993
BstDEI	CTNAG	4 cut(s)	250, 320, 768, 831
BstEII	GGTNACC	1 cut(s)	1045
BstF5I	GGATG	5 cut(s)	151, 667, 719, 949, 1126
BstKTI	GATC	3 cut(s)	175, 517, 1151
BstMAI	GTCTC	2 cut(s)	246, 1021
BstMBI	GATC	3 cut(s)	172, 514, 1148
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	6 cut(s)	41, 56, 167, 235, 306, 558
BstNSI	RCATGY	4 cut(s)	359, 680, 766, 819
BstPI	GGTNACC	1 cut(s)	1045
BstSCI	CCNGG	6 cut(s)	39, 54, 165, 233, 304, 556
BstV1I	GCAGC	2 cut(s)	113, 692
Bsu36I	CCTNAGG	1 cut(s)	768
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	5 cut(s)	151, 667, 719, 949, 1126
BtsI	GCAGTG	2 cut(s)	121, 338
BtsIMutI	CAGTG	4 cut(s)	121, 338, 496, 505
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	5 cut(s)	289, 357, 400, 817, 993
CciI	TCATGA	1 cut(s)	738
Cfr13I	GGNCC	1 cut(s)	136
CsiI	ACCWGGT	2 cut(s)	39, 304
Csp6I	GTAC	2 cut(s)	73, 411
CviQI	GTAC	2 cut(s)	73, 411
DdeI	CTNAG	4 cut(s)	250, 320, 768, 831
DpnI	GATC	3 cut(s)	174, 516, 1150
DpnII	GATC	3 cut(s)	172, 514, 1148
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	246
Eco81I	CCTNAGG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	594
Eco91I	GGTNACC	1 cut(s)	1045
EcoO65I	GGTNACC	1 cut(s)	1045
EcoRII	CCWGG	6 cut(s)	39, 54, 165, 233, 304, 556
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FauNDI	CATATG	1 cut(s)	1159
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	4 cut(s)	127, 681, 820, 996
FokI	GGATG	5 cut(s)	138, 674, 706, 956, 1133
Fsp4HI	GCNGC	4 cut(s)	127, 681, 820, 996
FspBI	CTAG	1 cut(s)	960
GluI	GCNGC	4 cut(s)	127, 681, 820, 996
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	281
HinfI	GANTC	6 cut(s)	162, 193, 230, 474, 757, 892
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	4 cut(s)	55, 268, 311, 398
Hpy166II	GTNNAC	3 cut(s)	302, 637, 1097
Hpy188I	TCNGA	6 cut(s)	479, 607, 699, 834, 907, 1056
Hpy188III	TCNNGA	8 cut(s)	159, 281, 322, 362, 374, 739, 983, 1111
Hpy8I	GTNNAC	3 cut(s)	302, 637, 1097
Hpy99I	CGWCG	2 cut(s)	64, 67
HpyAV	CCTTC	3 cut(s)	165, 474, 1126
HpyCH4III	ACNGT	4 cut(s)	11, 331, 500, 931
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	9 cut(s)	102, 190, 343, 418, 680, 706, 713, 727, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	4 cut(s)	250, 320, 768, 831
HpySE526I	ACGT	1 cut(s)	413
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	172, 514, 1148
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	3 cut(s)	26, 352, 1003
Lsp1109I	GCAGC	2 cut(s)	113, 692
LweI	GCATC	2 cut(s)	546, 1162
MabI	ACCWGGT	2 cut(s)	39, 304
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	5 cut(s)	386, 494, 500, 931, 1045
MalI	GATC	3 cut(s)	174, 516, 1150
MbiI	CCGCTC	1 cut(s)	822
MboI	GATC	3 cut(s)	172, 514, 1148
MboII	GAAGA	3 cut(s)	188, 544, 959
MfeI	CAATTG	1 cut(s)	825
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	6 cut(s)	423, 588, 611, 825, 1010, 1140
MlyI	GAGTC	3 cut(s)	171, 239, 483
MmeI	TCCRAC	4 cut(s)	330, 457, 529, 1025
MroI	TCCGGA	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	1177
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	6 cut(s)	41, 56, 167, 235, 306, 558
MunI	CAATTG	1 cut(s)	825
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	6 cut(s)	41, 56, 167, 235, 306, 558
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	1159
NdeII	GATC	3 cut(s)	172, 514, 1148
NlaIV	GGNNCC	1 cut(s)	999
NmeAIII	GCCGAG	1 cut(s)	497
NmuCI	GTSAC	3 cut(s)	386, 494, 500
NspI	RCATGY	4 cut(s)	359, 680, 766, 819
PaeI	GCATGC	2 cut(s)	359, 819
PaeR7I	CTCGAG	1 cut(s)	594
PagI	TCATGA	1 cut(s)	738
PciSI	GCTCTTC	1 cut(s)	527
PctI	GAATGC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	193, 757, 892
PfoI	TCCNGGA	2 cut(s)	165, 233
PkrI	GCNGC	4 cut(s)	128, 682, 821, 997
PleI	GAGTC	3 cut(s)	170, 238, 482
PpsI	GAGTC	3 cut(s)	170, 238, 482
Psp6I	CCWGG	6 cut(s)	39, 54, 165, 233, 304, 556
PspEI	GGTNACC	1 cut(s)	1045
PspGI	CCWGG	6 cut(s)	39, 54, 165, 233, 304, 556
PspN4I	GGNNCC	1 cut(s)	999
PspPI	GGNCC	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	594
RsaI	GTAC	2 cut(s)	74, 412
RsaNI	GTAC	2 cut(s)	73, 411
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	1177
SatI	GCNGC	4 cut(s)	127, 681, 820, 996
Sau3AI	GATC	3 cut(s)	172, 514, 1148
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	3 cut(s)	171, 239, 483
ScrFI	CCNGG	6 cut(s)	41, 56, 167, 235, 306, 558
SduI	GDGCHC	1 cut(s)	697
SexAI	ACCWGGT	2 cut(s)	39, 304
SfaNI	GCATC	2 cut(s)	546, 1162
Sfr274I	CTCGAG	1 cut(s)	594
SlaI	CTCGAG	1 cut(s)	594
SmlI	CTYRAG	3 cut(s)	360, 594, 983
SmoI	CTYRAG	3 cut(s)	360, 594, 983
SphI	GCATGC	2 cut(s)	359, 819
Sse9I	AATT	6 cut(s)	423, 588, 611, 825, 1010, 1140
SsiI	CCGC	6 cut(s)	108, 114, 200, 429, 820, 995
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	1 cut(s)	960
StyD4I	CCNGG	6 cut(s)	39, 54, 165, 233, 304, 556
TaaI	ACNGT	4 cut(s)	11, 331, 500, 931
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	2 cut(s)	373, 595
TasI	AATT	6 cut(s)	423, 588, 611, 825, 1010, 1140
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	2 cut(s)	822, 998
TfiI	GAWTC	3 cut(s)	193, 757, 892
Tru1I	TTAA	1 cut(s)	1177
Tru9I	TTAA	1 cut(s)	1177
TscAI	CASTG	4 cut(s)	128, 345, 496, 505
TseFI	GTSAC	3 cut(s)	386, 494, 500
TseI	GCWGC	2 cut(s)	126, 680
Tsp45I	GTSAC	3 cut(s)	386, 494, 500
TspDTI	ATGAA	2 cut(s)	663, 960
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	4 cut(s)	128, 345, 496, 505
XapI	RAATTY	3 cut(s)	423, 611, 1010
XceI	RCATGY	4 cut(s)	359, 680, 766, 819
XhoI	CTCGAG	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.