Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

225329 .. 231161

Gene Structure 5833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG000600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAGTCATAGTCATACTAGTTTGTGGGCGAACGCAAACCTGGTGAGGGCGACAAGAGTGAGCCAATTCAAGAACTATAACAACGTACATGTCACTTCCACCGCTTGGCACTGCCGCTGCTTCGTTGCCCGTCATCATCATCATCATCATCGTCCTCTTGATCTTGTGGTCCAGGACGATCTCCACTCCTTCTTGCAGATTCTTCCGCATGATTTACATGACCATCTCCTCAATGAATCCAAGAGATCTCAACTCTTAGAGGTCGTTTTCCAGAAGCACGATATCTTGGTGAACCTGGGGGTATCACTGCAAGAGTTGGAGCATGCTCAAAATGAAGTTGGAGATTTTGGAGGGGACAATAGAGCTGGCATTGAGGGTACGTTGCATAGAATATCCGCTATTAGGAGTAGGAATGGAATGATAGTTGGATTGACTTGCCGAGTCGGAAGGGCAATCAGTGGTCACATTGACATGGTTAATGATCTGCTTCAATATGGGAAGAGCATCTTGTTTGTTGGAAAGCCTGGGGTCGGCAAGACCACTGTTTTGCGAGAAATTGCTCGTGTTTTGTCAGATGAATTTCACAAAAGAGTGGTTATTGTGGATACAAGCAATGAAATAGCAGGGGATGGAAATATTCCACATGCATCAATAGGAGGTGCACGAAGAATGCAGGTAGCAGAACCATCCTTGCAACACAAAGTCATGATAGAGGCTGTGGAGAATCACATGCCTGAGGTCATCATTGTTGATGAGATTGGCACGGAAACTGAAGCTCTTGCATGTCGCTCAATTGCTCAGAGAGGTGTCATGCTTATTGCTACTGCTCATGGACAGCAGCTTGAGAATATAATGAAGAATCCTACTCTATCTGACCTGATTGGAGGAGTAGAAACTGTTACTTTGGGGGATGATGAAGCCAAAGCTAGAAAATGCCAGAAAACCATTCTTGAGAGGCAAGCGCCTCCAATGTTTGAATTCTTGATTGAGATGAGACACAGACACTATTGGGTTACCCATCAGACAGAAAAGAGTGTAGATATATTGCTTCGTGGCAAAAGTCCACAGGTTGAGGTAAATTTCTCAGTAATTGTATGTTTTGAAATCTTGTTGAGTTTTTTAGAAGCTGTTTTGTCTTGCATAGTAAACTTAAATCTTTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

388

Amino Acids

43.4

Weight (kDa)

6.5

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	144 - 295	9.5e-14	Sporulation stage III, protein AA
AAA_30	PF13604	158 - 302	1.2e-06	AAA domain
AAA	PF00004	169 - 254	4.5e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	664
AccB7I	CCANNNNNTGG	1 cut(s)	105
AciI	CCGC	4 cut(s)	102, 115, 206, 396
AcsI	RAATTY	3 cut(s)	578, 977, 1078
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	2 cut(s)	87, 379
AfiI	CCNNNNNNNGG	4 cut(s)	46, 105, 402, 530
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	70, 491, 977, 1103
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	4 cut(s)	39, 171, 294, 523
AluBI	AGCT	5 cut(s)	365, 776, 841, 926, 1127
AluI	AGCT	5 cut(s)	365, 776, 841, 926, 1127
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	1 cut(s)	988
Alw44I	GTGCAC	1 cut(s)	660
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	117, 838
ApoI	RAATTY	3 cut(s)	578, 977, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	55, 301
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	735
BaeGI	GKGCMC	1 cut(s)	664
BauI	CACGAG	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	2 cut(s)	104, 850
BccI	CCATC	4 cut(s)	231, 623, 694, 1026
BciT130I	CCWGG	4 cut(s)	41, 173, 296, 525
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	988
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	2 cut(s)	18, 927
BfoI	RGCGCY	1 cut(s)	965
BfuAI	ACCTGC	1 cut(s)	664
BfuI	GTATCC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	3 cut(s)	115, 118, 839
BlsI	GCNGC	3 cut(s)	116, 119, 840
Bme1390I	CCNGG	4 cut(s)	41, 173, 296, 525
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	4 cut(s)	41, 173, 296, 525
BmsI	GCATC	2 cut(s)	513, 656
BpuEI	CTTGAG	2 cut(s)	863, 971
BsaJI	CCNNGG	2 cut(s)	295, 524
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 105, 402, 530
Bse21I	CCTNAGG	1 cut(s)	735
Bse3DI	GCAATG	1 cut(s)	619
BseBI	CCWGG	4 cut(s)	41, 173, 296, 525
BseDI	CCNNGG	2 cut(s)	295, 524
BseGI	GGATG	3 cut(s)	634, 686, 916
BseLI	CCNNNNNNNGG	4 cut(s)	46, 105, 402, 530
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	3 cut(s)	726, 812, 1098
BseRI	GAGGAG	2 cut(s)	218, 900
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	2 cut(s)	104, 850
BsiHKAI	GWGCWC	1 cut(s)	664
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	4 cut(s)	46, 105, 402, 530
BsmAI	GTCTC	1 cut(s)	988
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	675
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp143I	GATC	4 cut(s)	160, 178, 245, 481
BspACI	CCGC	4 cut(s)	102, 115, 206, 396
BspCNI	CTCAG	3 cut(s)	727, 811, 1097
BspHI	TCATGA	1 cut(s)	705
BspMI	ACCTGC	1 cut(s)	664
BspQI	GCTCTTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	295, 524
BssMI	GATC	4 cut(s)	160, 178, 245, 481
BssSI	CACGAG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	561
Bst2UI	CCWGG	4 cut(s)	41, 173, 296, 525
Bst4CI	ACNGT	2 cut(s)	544, 898
Bst6I	CTCTTC	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	324, 367, 960
BstDEI	CTNAG	5 cut(s)	256, 735, 798, 1084, 1164
BstEII	GGTNACC	1 cut(s)	1012
BstF5I	GGATG	3 cut(s)	634, 686, 916
BstH2I	RGCGCY	1 cut(s)	965
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	4 cut(s)	163, 181, 248, 484
BstMAI	GTCTC	1 cut(s)	988
BstMBI	GATC	4 cut(s)	160, 178, 245, 481
BstNI	CCWGG	4 cut(s)	41, 173, 296, 525
BstNSI	RCATGY	5 cut(s)	92, 326, 647, 733, 786
BstPI	GGTNACC	1 cut(s)	1012
BstSCI	CCNGG	4 cut(s)	39, 171, 294, 523
BstSLI	GKGCMC	1 cut(s)	664
BstV1I	GCAGC	2 cut(s)	104, 850
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	598
BtsCI	GGATG	3 cut(s)	634, 686, 916
BtsI	GCAGTG	2 cut(s)	109, 305
BtsIMutI	CAGTG	4 cut(s)	109, 305, 463, 540
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	3 cut(s)	324, 367, 960
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	86, 378
CviJI	RGCY	9 cut(s)	63, 365, 523, 716, 776, 841, 920, 926, 1127
CviKI_1	RGCY	9 cut(s)	63, 365, 523, 716, 776, 841, 920, 926, 1127
CviQI	GTAC	2 cut(s)	86, 378
DdeI	CTNAG	5 cut(s)	256, 735, 798, 1084, 1164
DpnI	GATC	4 cut(s)	162, 180, 247, 483
DpnII	GATC	4 cut(s)	160, 178, 245, 481
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	735
Eco91I	GGTNACC	1 cut(s)	1012
EcoO65I	GGTNACC	1 cut(s)	1012
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	4 cut(s)	39, 171, 294, 523
EcoRV	GATATC	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	649
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	368
Fnu4HI	GCNGC	3 cut(s)	115, 118, 839
FokI	GGATG	3 cut(s)	641, 673, 923
Fsp4HI	GCNGC	3 cut(s)	115, 118, 839
FspBI	CTAG	2 cut(s)	18, 927
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	3 cut(s)	115, 118, 839
HaeII	RGCGCY	1 cut(s)	965
HhaI	GCGC	1 cut(s)	964
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HinfI	GANTC	6 cut(s)	4, 199, 236, 441, 724, 859
HphI	GGTGA	2 cut(s)	55, 301
Hpy166II	GTNNAC	4 cut(s)	292, 662, 1064, 1147
Hpy188I	TCNGA	5 cut(s)	446, 574, 801, 874, 1023
Hpy188III	TCNNGA	6 cut(s)	70, 158, 271, 706, 950, 982
Hpy8I	GTNNAC	4 cut(s)	292, 662, 1064, 1147
HpyAV	CCTTC	2 cut(s)	199, 441
HpyCH4III	ACNGT	2 cut(s)	544, 898
HpyCH4IV	ACGT	2 cut(s)	84, 380
HpyCH4V	TGCA	9 cut(s)	196, 310, 385, 647, 662, 673, 694, 782, 1140
HpyF3I	CTNAG	5 cut(s)	256, 735, 798, 1084, 1164
HpySE526I	ACGT	2 cut(s)	84, 380
HspAI	GCGC	1 cut(s)	962
Kzo9I	GATC	4 cut(s)	160, 178, 245, 481
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	2 cut(s)	104, 850
LweI	GCATC	2 cut(s)	513, 656
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	2 cut(s)	18, 927
MaeII	ACGT	2 cut(s)	84, 380
MaeIII	GTNAC	4 cut(s)	91, 461, 898, 1012
MalI	GATC	4 cut(s)	162, 180, 247, 483
MboI	GATC	4 cut(s)	160, 178, 245, 481
MboII	GAAGA	4 cut(s)	194, 511, 678, 868
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	7 cut(s)	65, 555, 578, 792, 977, 1078, 1089
MlyI	GAGTC	2 cut(s)	13, 450
MmeI	TCCRAC	5 cut(s)	297, 319, 406, 424, 496
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	2 cut(s)	477, 1151
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	117
MspR9I	CCNGG	4 cut(s)	41, 173, 296, 525
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	4 cut(s)	41, 173, 296, 525
NdeII	GATC	4 cut(s)	160, 178, 245, 481
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	91, 461
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	5 cut(s)	92, 326, 647, 733, 786
PaeI	GCATGC	1 cut(s)	326
PagI	TCATGA	1 cut(s)	705
PciI	ACATGT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	494
PctI	GAATGC	1 cut(s)	675
PfeI	GAWTC	4 cut(s)	199, 236, 724, 859
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	116, 119, 840
PleI	GAGTC	2 cut(s)	12, 449
PpsI	GAGTC	2 cut(s)	12, 449
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	4 cut(s)	39, 171, 294, 523
PspEI	GGTNACC	1 cut(s)	1012
PspGI	CCWGG	4 cut(s)	39, 171, 294, 523
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	87, 379
RsaNI	GTAC	2 cut(s)	86, 378
RseI	CAYNNNNRTG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	477, 1151
SatI	GCNGC	3 cut(s)	115, 118, 839
Sau3AI	GATC	4 cut(s)	160, 178, 245, 481
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	13, 450
ScrFI	CCNGG	4 cut(s)	41, 173, 296, 525
SduI	GDGCHC	1 cut(s)	664
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	513, 656
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	842, 950
SmoI	CTYRAG	2 cut(s)	842, 950
SpeI	ACTAGT	1 cut(s)	17
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	7 cut(s)	65, 555, 578, 792, 977, 1078, 1089
SsiI	CCGC	4 cut(s)	102, 115, 206, 396
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	2 cut(s)	18, 927
StyD4I	CCNGG	4 cut(s)	39, 171, 294, 523
TaaI	ACNGT	2 cut(s)	544, 898
TaiI	ACGT	2 cut(s)	87, 383
TasI	AATT	7 cut(s)	65, 555, 578, 792, 977, 1078, 1089
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	199, 236, 724, 859
Tru1I	TTAA	2 cut(s)	477, 1151
Tru9I	TTAA	2 cut(s)	477, 1151
TscAI	CASTG	4 cut(s)	116, 312, 463, 547
TseFI	GTSAC	2 cut(s)	91, 461
TseI	GCWGC	2 cut(s)	117, 838
Tsp45I	GTSAC	2 cut(s)	91, 461
TspDTI	ATGAA	6 cut(s)	249, 348, 591, 630, 869, 930
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	4 cut(s)	116, 312, 463, 547
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	3 cut(s)	578, 977, 1078
XceI	RCATGY	5 cut(s)	92, 326, 647, 733, 786
XspI	CTAG	2 cut(s)	18, 927
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.