Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

5350913 .. 5356878

Gene Structure 5966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGTCATGGTCATACTAGTTTGTGGGCGAACGCAAACCTGGTGAGGGCGACAAGAGTGAGCCAATTCAAGAACTATAACAACGTACATGTCACTTCCACCGCTTGGCACTGCCGCTGCTTCGTTGCCCATCATCATCCTCTTGATCTTGTGGTCCAGGACGATCTCCACTCCTTCTTGCAGATTCTTCCGCATGATTTACATGACCATCTCCTCAATGAATCCAAGAGATCTCAACTCTTAGAGGTCATATTGGATTTAGGTCGTTTTCCGGAAGCACGATATCTTGGTGAACCTAGGGGTCAATATCTGAGGGGAACTGTGGTATCACTGCAAGAGTTGGAGCATGCTCAAAATGAAGTTGGAGATTTTGGAGGGGACAATAGAGCTGGCATTGAGGGTACGTTGCATAGAATATCCGCTATTAGGAGTAGGAATGGAATGATAGTTGGATTGACTTGCCGAGTCGGAAGGGCAATCAGTGGTCACATTGACATGGTTAATGATCTGCTTCAATATGGGAAGAGCATCTTGTTTGTTGGAAAGCCTGGGGTCGGCAAGACCACTGTTTTGCGAGAAATTGCTCGTGTTTTGTCAGATGAATTTCACAAAAGAGTGGTTATTGTGGATACAAGCAATGAAATAGCAGGGGATGGAAATATTCCACATGCATCAATAGGAGGTGCACGAAGAATGCAGGTAGCAGAACCATCCTTGCAACACAAAGTCATGATAGAGGCTGTGGAGAATCACATGCCTGAGGTCATCATTGTTGATGAGATTGGCACGGAAACTGAAGCTCTTGCATGTCGCTCAATTGCTCAGAGAGGTGTCATGCTTATTGCTACTGCTCATGGACAGCAGCTTGAGAATATAATGAAGAATCCTACTCTATCTGACCTGATTGGAGGAGTAGAAACTGTTACTTTGGGGGATGATGAAGCCAAAGCTAGAAAATGCCAGAAAACCATTCTTGAGAGGCAAGCGCCTCCAACATTTGAATTCCTGATTGAGATGAGACACAGACACTATTGGGTTACCCATCAGACAGAAAAGAGTGTAGATATATTGCTTCGTGGCAAAAGTCCACAGGTTGAGGTCAGGACAAGGGATGATAATTTGAAGGTTGTAATTGAAAGATCAAAGGCATATCATAAATGTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

389

Amino Acids

43.54

Weight (kDa)

6.76

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	153 - 303	1e-13	Sporulation stage III, protein AA
AAA_30	PF13604	166 - 310	1.2e-06	AAA domain
AAA	PF00004	177 - 262	4.6e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	4 cut(s)	102, 115, 191, 420
AcsI	RAATTY	2 cut(s)	602, 1001
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	2 cut(s)	87, 403
AfiI	CCNNNNNNNGG	4 cut(s)	46, 105, 426, 554
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	5 cut(s)	70, 515, 1001, 1123, 1136
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	3 cut(s)	39, 156, 547
AluBI	AGCT	4 cut(s)	389, 800, 865, 950
AluI	AGCT	4 cut(s)	389, 800, 865, 950
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	1 cut(s)	1012
Alw44I	GTGCAC	1 cut(s)	684
Aor13HI	TCCGGA	1 cut(s)	271
ApaLI	GTGCAC	1 cut(s)	684
ApeKI	GCWGC	2 cut(s)	117, 862
ApoI	RAATTY	2 cut(s)	602, 1001
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
AspA2I	CCTAGG	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	988
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	55, 302
AvaII	GGWCC	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	759
BaeGI	GKGCMC	1 cut(s)	688
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BauI	CACGAG	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	104, 874
BccI	CCATC	5 cut(s)	138, 216, 647, 718, 1050
BciT130I	CCWGG	3 cut(s)	41, 158, 549
BciVI	GTATCC	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	1012
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	3 cut(s)	18, 297, 951
BfoI	RGCGCY	1 cut(s)	989
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	622
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	3 cut(s)	115, 118, 863
BlnI	CCTAGG	1 cut(s)	296
BlsI	GCNGC	3 cut(s)	116, 119, 864
Bme1390I	CCNGG	3 cut(s)	41, 158, 549
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	3 cut(s)	41, 158, 549
BmsI	GCATC	3 cut(s)	537, 680, 1153
BpuEI	CTTGAG	2 cut(s)	887, 995
BsaJI	CCNNGG	2 cut(s)	296, 548
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 105, 426, 554
Bse21I	CCTNAGG	1 cut(s)	759
Bse3DI	GCAATG	1 cut(s)	643
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	3 cut(s)	41, 158, 549
BseDI	CCNNGG	2 cut(s)	296, 548
BseGI	GGATG	5 cut(s)	136, 658, 710, 940, 1117
BseLI	CCNNNNNNNGG	4 cut(s)	46, 105, 426, 554
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	3 cut(s)	302, 750, 836
BseRI	GAGGAG	2 cut(s)	203, 924
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	2 cut(s)	104, 874
BsiHKAI	GWGCWC	1 cut(s)	688
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	4 cut(s)	46, 105, 426, 554
BsmAI	GTCTC	1 cut(s)	1012
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	699
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	5 cut(s)	145, 163, 230, 505, 1139
BspACI	CCGC	4 cut(s)	102, 115, 191, 420
BspCNI	CTCAG	3 cut(s)	303, 751, 835
BspEI	TCCGGA	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	729
BspMI	ACCTGC	1 cut(s)	688
BspQI	GCTCTTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	643
BssECI	CCNNGG	2 cut(s)	296, 548
BssMI	GATC	5 cut(s)	145, 163, 230, 505, 1139
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	3 cut(s)	41, 158, 549
Bst4CI	ACNGT	3 cut(s)	322, 568, 922
Bst6I	CTCTTC	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	348, 391, 984
BstDEI	CTNAG	4 cut(s)	241, 311, 759, 822
BstEII	GGTNACC	1 cut(s)	1036
BstF5I	GGATG	5 cut(s)	136, 658, 710, 940, 1117
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	1 cut(s)	988
BstKTI	GATC	5 cut(s)	148, 166, 233, 508, 1142
BstMAI	GTCTC	1 cut(s)	1012
BstMBI	GATC	5 cut(s)	145, 163, 230, 505, 1139
BstNI	CCWGG	3 cut(s)	41, 158, 549
BstNSI	RCATGY	5 cut(s)	92, 350, 671, 757, 810
BstPI	GGTNACC	1 cut(s)	1036
BstSCI	CCNGG	3 cut(s)	39, 156, 547
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	104, 874
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	622
BtsCI	GGATG	5 cut(s)	136, 658, 710, 940, 1117
BtsI	GCAGTG	2 cut(s)	109, 329
BtsIMutI	CAGTG	4 cut(s)	109, 329, 487, 564
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	348, 391, 984
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	1 cut(s)	988
Cfr13I	GGNCC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	86, 402
CviJI	RGCY	8 cut(s)	63, 389, 547, 740, 800, 865, 944, 950
CviKI_1	RGCY	8 cut(s)	63, 389, 547, 740, 800, 865, 944, 950
CviQI	GTAC	2 cut(s)	86, 402
DdeI	CTNAG	4 cut(s)	241, 311, 759, 822
DpnI	GATC	5 cut(s)	147, 165, 232, 507, 1141
DpnII	GATC	5 cut(s)	145, 163, 230, 505, 1139
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	816
Eco81I	CCTNAGG	1 cut(s)	759
Eco91I	GGTNACC	1 cut(s)	1036
EcoO65I	GGTNACC	1 cut(s)	1036
EcoRI	GAATTC	1 cut(s)	1001
EcoRII	CCWGG	3 cut(s)	39, 156, 547
EcoRV	GATATC	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	296
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	115, 118, 863
FokI	GGATG	5 cut(s)	123, 665, 697, 947, 1124
Fsp4HI	GCNGC	3 cut(s)	115, 118, 863
FspBI	CTAG	3 cut(s)	18, 297, 951
GlaI	GCGC	1 cut(s)	987
GluI	GCNGC	3 cut(s)	115, 118, 863
HaeII	RGCGCY	1 cut(s)	989
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	988
Hin6I	GCGC	1 cut(s)	986
HinP1I	GCGC	1 cut(s)	986
HinfI	GANTC	6 cut(s)	4, 184, 221, 465, 748, 883
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	55, 302
Hpy166II	GTNNAC	3 cut(s)	293, 686, 1088
Hpy188I	TCNGA	6 cut(s)	312, 470, 598, 825, 898, 1047
Hpy188III	TCNNGA	7 cut(s)	70, 143, 272, 730, 974, 1006, 1102
Hpy8I	GTNNAC	3 cut(s)	293, 686, 1088
HpyAV	CCTTC	3 cut(s)	184, 465, 1117
HpyCH4III	ACNGT	3 cut(s)	322, 568, 922
HpyCH4IV	ACGT	2 cut(s)	84, 404
HpyCH4V	TGCA	8 cut(s)	181, 334, 409, 671, 686, 697, 718, 806
HpyF3I	CTNAG	4 cut(s)	241, 311, 759, 822
HpySE526I	ACGT	2 cut(s)	84, 404
HspAI	GCGC	1 cut(s)	986
Kpn2I	TCCGGA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	145, 163, 230, 505, 1139
LguI	GCTCTTC	1 cut(s)	518
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	2 cut(s)	104, 874
LweI	GCATC	3 cut(s)	537, 680, 1153
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	3 cut(s)	18, 297, 951
MaeII	ACGT	2 cut(s)	84, 404
MaeIII	GTNAC	4 cut(s)	91, 485, 922, 1036
MalI	GATC	5 cut(s)	147, 165, 232, 507, 1141
MboI	GATC	5 cut(s)	145, 163, 230, 505, 1139
MboII	GAAGA	4 cut(s)	179, 535, 702, 892
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	7 cut(s)	65, 579, 602, 816, 1001, 1117, 1131
MlyI	GAGTC	2 cut(s)	13, 474
MmeI	TCCRAC	6 cut(s)	321, 343, 430, 448, 520, 1016
Mph1103I	ATGCAT	1 cut(s)	673
MroI	TCCGGA	1 cut(s)	271
MseI	TTAA	2 cut(s)	501, 1168
MslI	CAYNNNNRTG	2 cut(s)	494, 1158
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	41, 158, 549
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	3 cut(s)	41, 158, 549
NdeII	GATC	5 cut(s)	145, 163, 230, 505, 1139
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	2 cut(s)	91, 485
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	5 cut(s)	92, 350, 671, 757, 810
PaeI	GCATGC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	729
PciI	ACATGT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	518
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	4 cut(s)	184, 221, 748, 883
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	3 cut(s)	116, 119, 864
PleI	GAGTC	2 cut(s)	12, 473
PpsI	GAGTC	2 cut(s)	12, 473
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	39, 156, 547
PspEI	GGTNACC	1 cut(s)	1036
PspGI	CCWGG	3 cut(s)	39, 156, 547
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	2 cut(s)	87, 403
RsaNI	GTAC	2 cut(s)	86, 402
RseI	CAYNNNNRTG	2 cut(s)	494, 1158
SapI	GCTCTTC	1 cut(s)	518
SaqAI	TTAA	2 cut(s)	501, 1168
SatI	GCNGC	3 cut(s)	115, 118, 863
Sau3AI	GATC	5 cut(s)	145, 163, 230, 505, 1139
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	13, 474
ScrFI	CCNGG	3 cut(s)	41, 158, 549
SduI	GDGCHC	1 cut(s)	688
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	3 cut(s)	537, 680, 1153
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	494, 1158
SmlI	CTYRAG	2 cut(s)	866, 974
SmoI	CTYRAG	2 cut(s)	866, 974
SpeI	ACTAGT	1 cut(s)	17
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	7 cut(s)	65, 579, 602, 816, 1001, 1117, 1131
SsiI	CCGC	4 cut(s)	102, 115, 191, 420
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	3 cut(s)	18, 297, 951
StyD4I	CCNGG	3 cut(s)	39, 156, 547
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	3 cut(s)	322, 568, 922
TaiI	ACGT	2 cut(s)	87, 407
TasI	AATT	7 cut(s)	65, 579, 602, 816, 1001, 1117, 1131
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	184, 221, 748, 883
Tru1I	TTAA	2 cut(s)	501, 1168
Tru9I	TTAA	2 cut(s)	501, 1168
TscAI	CASTG	4 cut(s)	116, 336, 487, 571
TseFI	GTSAC	2 cut(s)	91, 485
TseI	GCWGC	2 cut(s)	117, 862
Tsp45I	GTSAC	2 cut(s)	91, 485
TspDTI	ATGAA	6 cut(s)	234, 372, 615, 654, 893, 954
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	4 cut(s)	116, 336, 487, 571
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	2 cut(s)	602, 1001
XceI	RCATGY	5 cut(s)	92, 350, 671, 757, 810
XmaJI	CCTAGG	1 cut(s)	296
XspI	CTAG	3 cut(s)	18, 297, 951
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.