Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

67460382 .. 67461327

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0491800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATCCGAATATGGAGACGCGGGTCAACGAGTCTCTGCAGCAGCTGCCGACGACCCAACAAGGGTCGACGGAGGCAGTGTCGCGACTCGACATTGAAGCTCAGCGACTCGCAGACGAGTCAAGCCTCTACGATTATTTCGCTGCTACGGGAATCCGAGTGGACCGAGTCGAACCCGGACTCGTCGTCTCTTCTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTTGCCAATGGTGCAATTGCAAACCTTGTTGATATAGTAGCTCACTCTCCAATTTATGTTGTGGGTCAACCTGCTAATGTTTCAGTAGACATTTCCATCTCGTATTTGTCAACTGCAAAGGTCCATGATGAGTTAGAGATCACCTCAAAGAGGTTAGGACAAAGAGGACGTTATACTGGAATACTTGTGTGCCTGAGAAACAAAGTGACTGGGGAGATCATTGCTGAAGGTCGGCATTCAATGTTTCTTTCGAAAGTTGTTCCCAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

168

Amino Acids

18.37

Weight (kDa)

6.3

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccI	GTMKAC	2 cut(s)	68, 321
AccII	CGCG	2 cut(s)	22, 85
AciI	CCGC	2 cut(s)	22, 211
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	63, 384
AgsI	TTSAA	3 cut(s)	98, 199, 474
AhdI	GACNNNNNGTC	1 cut(s)	185
AluBI	AGCT	4 cut(s)	46, 101, 227, 275
AluI	AGCT	4 cut(s)	46, 101, 227, 275
Alw26I	GTCTC	3 cut(s)	11, 39, 193
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	46
ApeKI	GCWGC	4 cut(s)	40, 43, 46, 143
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	3 cut(s)	163, 202, 355
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	208, 367
AsuII	TTCGAA	1 cut(s)	485
AvaII	GGWCC	3 cut(s)	163, 202, 355
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	4 cut(s)	33, 52, 55, 130
BccI	CCATC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	11, 39, 193
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	4 cut(s)	41, 44, 47, 144
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	4 cut(s)	42, 45, 48, 145
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	3 cut(s)	163, 202, 355
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	163, 202, 355
BmiI	GGNNCC	2 cut(s)	6, 204
BmrFI	CCNGG	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	453
BoxI	GACNNNNGTC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
Bpu1102I	GCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 384
Bse1I	ACTGG	2 cut(s)	415, 448
Bse3DI	GCAATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	63, 384
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	116, 419
BseNI	ACTGG	2 cut(s)	415, 448
BseXI	GCAGC	4 cut(s)	33, 52, 55, 130
Bsh1236I	CGCG	2 cut(s)	22, 85
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	63, 384
BsmAI	GTCTC	3 cut(s)	11, 39, 193
BsmBI	CGTCTC	2 cut(s)	11, 193
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	469
Bsp119I	TTCGAA	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	4, 372, 450
Bsp1720I	GCTNAGC	1 cut(s)	102
Bsp68I	TCGCGA	1 cut(s)	85
BspACI	CCGC	2 cut(s)	22, 211
BspCNI	CTCAG	2 cut(s)	115, 420
BspFNI	CGCG	2 cut(s)	22, 85
BspLI	GGNNCC	2 cut(s)	6, 204
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	415, 448
BssMI	GATC	3 cut(s)	4, 372, 450
Bst6I	CTCTTC	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	102, 428
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstFNI	CGCG	2 cut(s)	22, 85
BstKTI	GATC	3 cut(s)	7, 375, 453
BstMAI	GTCTC	3 cut(s)	11, 39, 193
BstMBI	GATC	3 cut(s)	4, 372, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 245
BstPAI	GACNNNNGTC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	38
BstUI	CGCG	2 cut(s)	22, 85
BstV1I	GCAGC	4 cut(s)	33, 52, 55, 130
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
BtuMI	TCGCGA	1 cut(s)	85
BveI	ACCTGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	163, 202, 355
CseI	GACGC	1 cut(s)	28
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	5 cut(s)	46, 101, 126, 227, 275
CviKI_1	RGCY	5 cut(s)	46, 101, 126, 227, 275
DdeI	CTNAG	2 cut(s)	102, 428
DpnI	GATC	3 cut(s)	6, 374, 452
DpnII	GATC	3 cut(s)	4, 372, 450
DriI	GACNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	196
Eam1105I	GACNNNNNGTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	163, 202, 355
Eco57I	CTGAAG	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	202
Esp3I	CGTCTC	2 cut(s)	11, 193
FaeI	CATG	1 cut(s)	362
FaiI	YATR	5 cut(s)	14, 269, 291, 360, 408
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	358
FauI	CCCGC	2 cut(s)	15, 218
FblI	GTMKAC	2 cut(s)	68, 321
Fnu4HI	GCNGC	4 cut(s)	41, 44, 47, 144
Fsp4HI	GCNGC	4 cut(s)	41, 44, 47, 144
GluI	GCNGC	4 cut(s)	41, 44, 47, 144
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	362
HincII	GTYRAC	4 cut(s)	28, 69, 302, 345
HindII	GTYRAC	4 cut(s)	28, 69, 302, 345
HinfI	GANTC	7 cut(s)	32, 87, 108, 119, 153, 168, 180
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	208, 367
Hpy166II	GTNNAC	6 cut(s)	28, 69, 163, 302, 322, 345
Hpy188I	TCNGA	3 cut(s)	9, 158, 506
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	6 cut(s)	28, 69, 163, 302, 322, 345
Hpy99I	CGWCG	3 cut(s)	55, 73, 188
HpyAV	CCTTC	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	40, 248, 254, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 245
HpyF3I	CTNAG	2 cut(s)	102, 428
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	4, 372, 450
LpnPI	CCDG	6 cut(s)	190, 213, 318, 396, 429, 440
Lsp1109I	GCAGC	4 cut(s)	33, 52, 55, 130
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	6, 374, 452
MboI	GATC	3 cut(s)	4, 372, 450
MboII	GAAGA	1 cut(s)	183
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	232, 249, 285
MlyI	GAGTC	6 cut(s)	41, 81, 102, 128, 174, 177
MnlI	CCTC	7 cut(s)	67, 137, 216, 224, 378, 388, 392
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	469
MvnI	CGCG	2 cut(s)	22, 85
MwoI	GCNNNNNNNGC	2 cut(s)	46, 245
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	4, 372, 450
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	6, 204
NmuCI	GTSAC	1 cut(s)	439
NruI	TCGCGA	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	485
PctI	GAATGC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	42, 45, 48, 145
PleI	GAGTC	6 cut(s)	40, 81, 102, 127, 174, 176
PpsI	GAGTC	6 cut(s)	40, 81, 102, 127, 174, 176
PpuMI	RGGWCCY	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	6, 204
PspPI	GGNCC	3 cut(s)	163, 202, 355
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	46
RruI	TCGCGA	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	67
SatI	GCNGC	4 cut(s)	41, 44, 47, 144
Sau3AI	GATC	3 cut(s)	4, 372, 450
Sau96I	GGNCC	3 cut(s)	163, 202, 355
SchI	GAGTC	6 cut(s)	41, 81, 102, 128, 174, 177
ScrFI	CCNGG	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	485
SinI	GGWCC	3 cut(s)	163, 202, 355
Sse9I	AATT	3 cut(s)	232, 249, 285
SsiI	CCGC	2 cut(s)	22, 211
StyD4I	CCNGG	1 cut(s)	175
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	4 cut(s)	68, 90, 171, 485
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	232, 249, 285
TfiI	GAWTC	1 cut(s)	153
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	40, 43, 46, 143
Tsp45I	GTSAC	1 cut(s)	439
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	3 cut(s)	163, 202, 355
XagI	CCTNNNNNAGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	232
XmiI	GTMKAC	2 cut(s)	68, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.