Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

377612 .. 383538

Gene Structure 5927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAGTCATGGTCATACTAGTTTGTGGGCGAACGCAAACCTGGTGAGGTCGACAAGAGTGAGCCAATTCAAGAACTATAACAACGTACATGTCACTTCCACCGCTTGGCACTGCCGCTGCTTCGTTGCCCATCATCATCATCGTCCTCTTGATCTTGTGGTCCAGGACGATCTCCACTCCTTCTTGCAGATTCTTCCGCATGATTTACATGACCATCTCCTCAATGAATCCAAGAGATCTCAACTCTTAGAGGTCATATTGGATTTAGGTCGTTTTCCGGAAGCACGATATCTTGGTGAACCTGGGGGTCAATATCTGAGGGGAACTGTGGTATCACTGCAAGAGTTGGAGCATGCTCAAAATGAAGTTGGAGATTTTGGAGGGGACAATAGAGCTGGCATTGAGGGTACGTTGCATAGAATATCCGCTATTAGGAGTAGGAATGGAATGATAGTTGGATTGACTTGCCGAGTCGGAAGGGCAATCAGTGGTCACATTGACATGGTTAATGATCTGCTTCAATATGGGAAGAGCATCTTGTTTGTTGGAAAGCCTGGGGTTGGCAAGACCACTGTTTTGCGAGAAATTGCTCGTGTTTTGTCAGATGAATTTCACAAAAGAGTGGTTATTGTGGATACAAGCAATGAAATAGCAGGGGATGGAAATATTCCACATGCATCAATAGGAGGTGCACGAAGAATGCAGGTAGCAGAACCATCCTTGCAACACAAAGTCATGATAGAGGCTGTGGAGAATCACATGCCTGAGGTCATCATTGTTGATGAGATTGGCACGGAAACTGAAGCTCTTGCATGTCGCTCAATTGCTCAGAGAGGTGTCATGCTTATTGCTACTGCTCATGGACAGCAGCTTGAGAATATAATGAAGAATCCTACTCTATCTGACCTGATTGGAGGAGTAGAAACTGTTACTTTGGGGGATGATGAAGCCAAAGCTAGAAAATGCCAGAAAACCATTCTTGAGAGGCAAGCGCCTCCAACGTTTGAATTCTTGATTGAGATGAGACACAGACACTATTGGGTTACCCATCAGACAGAAAAGAGTGTAGATATATTGCTTCGTGGCAAAAGTCCACAGGTTGAGGTAAATTTCTCAGTAATTGTATGTTTTGAAATCTTGTGGAGTTTTTTAAAAGCTGTTTTGTCTTGCATATTAAACTTAAATCTTTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

398

Amino Acids

44.41

Weight (kDa)

6.54

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	156 - 305	1.2e-13	Sporulation stage III, protein AA
AAA_30	PF13604	168 - 312	1.3e-06	AAA domain
AAA	PF00004	179 - 264	4.7e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	4 cut(s)	102, 115, 197, 426
AclI	AACGTT	1 cut(s)	1001
AcsI	RAATTY	3 cut(s)	608, 1007, 1108
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	87, 409
AfiI	CCNNNNNNNGG	3 cut(s)	105, 432, 560
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	70, 521, 1007, 1133
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	4 cut(s)	39, 162, 301, 553
AluBI	AGCT	5 cut(s)	395, 806, 871, 956, 1157
AluI	AGCT	5 cut(s)	395, 806, 871, 956, 1157
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	1 cut(s)	1018
Alw44I	GTGCAC	1 cut(s)	690
Aor13HI	TCCGGA	1 cut(s)	277
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	2 cut(s)	117, 868
ApoI	RAATTY	3 cut(s)	608, 1007, 1108
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspLEI	GCGC	1 cut(s)	994
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	55, 308
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	765
BaeGI	GKGCMC	1 cut(s)	694
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BauI	CACGAG	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	2 cut(s)	104, 880
BccI	CCATC	5 cut(s)	138, 222, 653, 724, 1056
BciT130I	CCWGG	4 cut(s)	41, 164, 303, 555
BciVI	GTATCC	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	1018
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	2 cut(s)	18, 957
BfoI	RGCGCY	1 cut(s)	995
BfuAI	ACCTGC	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	628
BglII	AGATCT	1 cut(s)	236
BisI	GCNGC	3 cut(s)	115, 118, 869
BlsI	GCNGC	3 cut(s)	116, 119, 870
Bme1390I	CCNGG	4 cut(s)	41, 164, 303, 555
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	4 cut(s)	41, 164, 303, 555
BmsI	GCATC	2 cut(s)	543, 686
BpuEI	CTTGAG	2 cut(s)	893, 1001
BsaJI	CCNNGG	2 cut(s)	302, 554
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 432, 560
Bse21I	CCTNAGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	649
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	4 cut(s)	41, 164, 303, 555
BseDI	CCNNGG	2 cut(s)	302, 554
BseGI	GGATG	3 cut(s)	664, 716, 946
BseLI	CCNNNNNNNGG	3 cut(s)	105, 432, 560
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	4 cut(s)	308, 756, 842, 1128
BseRI	GAGGAG	2 cut(s)	209, 930
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	104, 880
BsiHKAI	GWGCWC	1 cut(s)	694
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	105, 432, 560
BsmAI	GTCTC	1 cut(s)	1018
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	151, 169, 236, 511
BspACI	CCGC	4 cut(s)	102, 115, 197, 426
BspCNI	CTCAG	4 cut(s)	309, 757, 841, 1127
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	694
BspQI	GCTCTTC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	649
BssECI	CCNNGG	2 cut(s)	302, 554
BssMI	GATC	4 cut(s)	151, 169, 236, 511
BssSI	CACGAG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	4 cut(s)	41, 164, 303, 555
Bst4CI	ACNGT	3 cut(s)	328, 574, 928
Bst6I	CTCTTC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	354, 397, 990
BstDEI	CTNAG	6 cut(s)	247, 317, 765, 828, 1114, 1194
BstEII	GGTNACC	1 cut(s)	1042
BstF5I	GGATG	3 cut(s)	664, 716, 946
BstH2I	RGCGCY	1 cut(s)	995
BstHHI	GCGC	1 cut(s)	994
BstKTI	GATC	4 cut(s)	154, 172, 239, 514
BstMAI	GTCTC	1 cut(s)	1018
BstMBI	GATC	4 cut(s)	151, 169, 236, 511
BstNI	CCWGG	4 cut(s)	41, 164, 303, 555
BstNSI	RCATGY	5 cut(s)	92, 356, 677, 763, 816
BstPI	GGTNACC	1 cut(s)	1042
BstSCI	CCNGG	4 cut(s)	39, 162, 301, 553
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	104, 880
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
Bsu36I	CCTNAGG	1 cut(s)	765
BsuI	GTATCC	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	664, 716, 946
BtsI	GCAGTG	2 cut(s)	109, 335
BtsIMutI	CAGTG	4 cut(s)	109, 335, 493, 570
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	354, 397, 990
CciI	TCATGA	1 cut(s)	735
CfoI	GCGC	1 cut(s)	994
Cfr13I	GGNCC	1 cut(s)	160
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	86, 408
CviJI	RGCY	9 cut(s)	63, 395, 553, 746, 806, 871, 950, 956, 1157
CviKI_1	RGCY	9 cut(s)	63, 395, 553, 746, 806, 871, 950, 956, 1157
CviQI	GTAC	2 cut(s)	86, 408
DdeI	CTNAG	6 cut(s)	247, 317, 765, 828, 1114, 1194
DpnI	GATC	4 cut(s)	153, 171, 238, 513
DpnII	GATC	4 cut(s)	151, 169, 236, 511
DraI	TTTAAA	1 cut(s)	1152
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Eco32I	GATATC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	822
Eco81I	CCTNAGG	1 cut(s)	765
Eco91I	GGTNACC	1 cut(s)	1042
EcoO65I	GGTNACC	1 cut(s)	1042
EcoRI	GAATTC	1 cut(s)	1007
EcoRII	CCWGG	4 cut(s)	39, 162, 301, 553
EcoRV	GATATC	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	679
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	398
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	115, 118, 869
FokI	GGATG	3 cut(s)	671, 703, 953
Fsp4HI	GCNGC	3 cut(s)	115, 118, 869
FspBI	CTAG	2 cut(s)	18, 957
GlaI	GCGC	1 cut(s)	993
GluI	GCNGC	3 cut(s)	115, 118, 869
HaeII	RGCGCY	1 cut(s)	995
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	994
Hin6I	GCGC	1 cut(s)	992
HinP1I	GCGC	1 cut(s)	992
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	6 cut(s)	4, 190, 227, 471, 754, 889
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	2 cut(s)	55, 308
Hpy166II	GTNNAC	4 cut(s)	51, 299, 692, 1094
Hpy188I	TCNGA	6 cut(s)	318, 476, 604, 831, 904, 1053
Hpy188III	TCNNGA	6 cut(s)	70, 149, 278, 736, 980, 1012
Hpy8I	GTNNAC	4 cut(s)	51, 299, 692, 1094
HpyAV	CCTTC	2 cut(s)	190, 471
HpyCH4III	ACNGT	3 cut(s)	328, 574, 928
HpyCH4IV	ACGT	3 cut(s)	84, 410, 1001
HpyCH4V	TGCA	9 cut(s)	187, 340, 415, 677, 692, 703, 724, 812, 1170
HpyF3I	CTNAG	6 cut(s)	247, 317, 765, 828, 1114, 1194
HpySE526I	ACGT	3 cut(s)	84, 410, 1001
HspAI	GCGC	1 cut(s)	992
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	151, 169, 236, 511
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	2 cut(s)	104, 880
LweI	GCATC	2 cut(s)	543, 686
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	2 cut(s)	18, 957
MaeII	ACGT	3 cut(s)	84, 410, 1001
MaeIII	GTNAC	4 cut(s)	91, 491, 928, 1042
MalI	GATC	4 cut(s)	153, 171, 238, 513
MboI	GATC	4 cut(s)	151, 169, 236, 511
MboII	GAAGA	4 cut(s)	185, 541, 708, 898
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	7 cut(s)	65, 585, 608, 822, 1007, 1108, 1119
MlyI	GAGTC	2 cut(s)	13, 480
MmeI	TCCRAC	6 cut(s)	327, 349, 436, 454, 526, 1022
Mph1103I	ATGCAT	1 cut(s)	679
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	4 cut(s)	507, 1151, 1175, 1181
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	4 cut(s)	41, 164, 303, 555
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	705
MvaI	CCWGG	4 cut(s)	41, 164, 303, 555
NdeII	GATC	4 cut(s)	151, 169, 236, 511
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	2 cut(s)	91, 491
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	5 cut(s)	92, 356, 677, 763, 816
PaeI	GCATGC	1 cut(s)	356
PagI	TCATGA	1 cut(s)	735
PciI	ACATGT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	524
PctI	GAATGC	1 cut(s)	705
PfeI	GAWTC	4 cut(s)	190, 227, 754, 889
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	116, 119, 870
PleI	GAGTC	2 cut(s)	12, 479
PpsI	GAGTC	2 cut(s)	12, 479
PscI	ACATGT	1 cut(s)	88
Psp1406I	AACGTT	1 cut(s)	1001
Psp6I	CCWGG	4 cut(s)	39, 162, 301, 553
PspEI	GGTNACC	1 cut(s)	1042
PspGI	CCWGG	4 cut(s)	39, 162, 301, 553
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	2 cut(s)	87, 409
RsaNI	GTAC	2 cut(s)	86, 408
RseI	CAYNNNNRTG	1 cut(s)	500
SalI	GTCGAC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	507, 1151, 1175, 1181
SatI	GCNGC	3 cut(s)	115, 118, 869
Sau3AI	GATC	4 cut(s)	151, 169, 236, 511
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	13, 480
ScrFI	CCNGG	4 cut(s)	41, 164, 303, 555
SduI	GDGCHC	1 cut(s)	694
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	543, 686
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	872, 980
SmoI	CTYRAG	2 cut(s)	872, 980
SpeI	ACTAGT	1 cut(s)	17
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	7 cut(s)	65, 585, 608, 822, 1007, 1108, 1119
SsiI	CCGC	4 cut(s)	102, 115, 197, 426
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	18, 957
StyD4I	CCNGG	4 cut(s)	39, 162, 301, 553
TaaI	ACNGT	3 cut(s)	328, 574, 928
TaiI	ACGT	3 cut(s)	87, 413, 1004
TaqI	TCGA	1 cut(s)	50
TasI	AATT	7 cut(s)	65, 585, 608, 822, 1007, 1108, 1119
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	190, 227, 754, 889
Tru1I	TTAA	4 cut(s)	507, 1151, 1175, 1181
Tru9I	TTAA	4 cut(s)	507, 1151, 1175, 1181
TscAI	CASTG	4 cut(s)	116, 342, 493, 577
TseFI	GTSAC	2 cut(s)	91, 491
TseI	GCWGC	2 cut(s)	117, 868
Tsp45I	GTSAC	2 cut(s)	91, 491
TspDTI	ATGAA	6 cut(s)	240, 378, 621, 660, 899, 960
TspGWI	ACGGA	1 cut(s)	809
TspRI	CASTG	4 cut(s)	116, 342, 493, 577
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	690
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	3 cut(s)	608, 1007, 1108
XceI	RCATGY	5 cut(s)	92, 356, 677, 763, 816
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	2 cut(s)	18, 957
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.