Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Forward (+)

1199972 .. 1205403

Gene Structure 5432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG008500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGTCATGGTCATACTAGTTTGTGGGCGAACGCAAACCTGGTGAGGGCGACAAGAGTGAGCCAATTCAAGAACTATAACAACGTACATGTCACTTCCACCGCTTGGCACTGCCGCTGCTTCGTTGCCCATCATCATCATCATCATCATCCTCTTGATCTTGTGGTCCAGGACGATCTCCACTCCTTCTTGCAGATTCTTCCGCATGATTTACATGACCATCTCCTCAATGAATCCAAGAGATCTCAACTCTTAGAGGTCATATTGGATTTAGGTCGTTTTCCGGAAGCACGATATCTTGGTGAACCTGGGGGTCAATATCTGAGGGGAACTGTGGTATCACTGCAAGAGTTGGAGCATGCTCAAAATGAAGTTGGAGATTTTGGAGGGGACAATAGAGCTGGCATTGAGGGTACGTTGCACAGAATATCCGCTATTAGGAGTAGGAATGGAATGATAGTTGGATTGACTTGCCGAGTCGGAAGGGCAATCAGTGGTCACATTGACATGGTTAATGATCTGCTTCAATATGGGAAGAGCATCTTGTTTGTTGGAAAGCCTGGGGTCGGCAAGACCACTGTTTTGCGAGAAATTGCTCGTGTTTTGTCAGATGAATTTCACAAAAGAGTGGTTATTGTGGATACAAGCAATGAAATAGCAGGGGATGGAAATATTCCACATGCATCAATAGGAGGTGCACGAAGAATGCAGGTAGCAGAACCATCCTTGCAACACAAAGTCATGATAGAGGCTGTGGAGAATCACATGCCTGAGGTCATCATTGTTGATGAGATTGGCACGGAAACTGAAGCTCTTGCATGTCGCTCAATTGCTCAGAGAGGTGTCATGCTTATTGCTACTGCTCATGGACAGCAGCTTGAGAATATAATGAAGAATCCTACTCTATCTGACCTGATTGGAGGAGTAGAAACTGTTACTTTGGGGGATGATGAAGCCAAAGCAAGAAAATGCCAGAAAACCATTATTGAGAGGCAAGCGCCTCCAACGTTTGAATTCTTGATTGAGATGAGACACAGACACTATTGGGTTACCCATCAGACAGAAAAGAGTGTAGATATATTGCTTCGTGGCAAAAGTCCACAGGTTGAGGTCAGGACAAGGGATGATAATTTGAAGGTTGTAATTGAAAGATCAAAGGCATATCATAAATGTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

393

Amino Acids

43.99

Weight (kDa)

6.72

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	157 - 307	1.1e-13	Sporulation stage III, protein AA
AAA_30	PF13604	170 - 314	1.2e-06	AAA domain
AAA	PF00004	181 - 266	4.6e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	4 cut(s)	102, 115, 203, 432
AclI	AACGTT	1 cut(s)	1007
AcsI	RAATTY	2 cut(s)	614, 1013
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	2 cut(s)	87, 415
AfiI	CCNNNNNNNGG	4 cut(s)	46, 105, 438, 566
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	5 cut(s)	70, 527, 1013, 1135, 1148
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	4 cut(s)	39, 168, 307, 559
AluBI	AGCT	3 cut(s)	401, 812, 877
AluI	AGCT	3 cut(s)	401, 812, 877
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	1024
Alw44I	GTGCAC	1 cut(s)	696
Aor13HI	TCCGGA	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	2 cut(s)	117, 874
ApoI	RAATTY	2 cut(s)	614, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	55, 314
AvaII	GGWCC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	771
BaeGI	GKGCMC	1 cut(s)	700
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BauI	CACGAG	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	104, 886
BccI	CCATC	5 cut(s)	138, 228, 659, 730, 1062
BciT130I	CCWGG	4 cut(s)	41, 170, 309, 561
BciVI	GTATCC	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	1024
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	1001
BfuAI	ACCTGC	1 cut(s)	700
BfuI	GTATCC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	3 cut(s)	115, 118, 875
BlsI	GCNGC	3 cut(s)	116, 119, 876
Bme1390I	CCNGG	4 cut(s)	41, 170, 309, 561
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	4 cut(s)	41, 170, 309, 561
BmsI	GCATC	3 cut(s)	549, 692, 1165
BpuEI	CTTGAG	1 cut(s)	899
BsaJI	CCNNGG	2 cut(s)	308, 560
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 105, 438, 566
Bse21I	CCTNAGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	655
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	4 cut(s)	41, 170, 309, 561
BseDI	CCNNGG	2 cut(s)	308, 560
BseGI	GGATG	5 cut(s)	148, 670, 722, 952, 1129
BseLI	CCNNNNNNNGG	4 cut(s)	46, 105, 438, 566
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	314, 762, 848
BseRI	GAGGAG	2 cut(s)	215, 936
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	104, 886
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	4 cut(s)	46, 105, 438, 566
BsmAI	GTCTC	1 cut(s)	1024
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	5 cut(s)	157, 175, 242, 517, 1151
BspACI	CCGC	4 cut(s)	102, 115, 203, 432
BspCNI	CTCAG	3 cut(s)	315, 763, 847
BspEI	TCCGGA	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	700
BspQI	GCTCTTC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	655
BssECI	CCNNGG	2 cut(s)	308, 560
BssMI	GATC	5 cut(s)	157, 175, 242, 517, 1151
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	4 cut(s)	41, 170, 309, 561
Bst4CI	ACNGT	3 cut(s)	334, 580, 934
Bst6I	CTCTTC	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	360, 403, 996
BstDEI	CTNAG	4 cut(s)	253, 323, 771, 834
BstEII	GGTNACC	1 cut(s)	1048
BstF5I	GGATG	5 cut(s)	148, 670, 722, 952, 1129
BstH2I	RGCGCY	1 cut(s)	1001
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	5 cut(s)	160, 178, 245, 520, 1154
BstMAI	GTCTC	1 cut(s)	1024
BstMBI	GATC	5 cut(s)	157, 175, 242, 517, 1151
BstNI	CCWGG	4 cut(s)	41, 170, 309, 561
BstNSI	RCATGY	5 cut(s)	92, 362, 683, 769, 822
BstPI	GGTNACC	1 cut(s)	1048
BstSCI	CCNGG	4 cut(s)	39, 168, 307, 559
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	2 cut(s)	104, 886
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
Bsu36I	CCTNAGG	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	634
BtsCI	GGATG	5 cut(s)	148, 670, 722, 952, 1129
BtsI	GCAGTG	2 cut(s)	109, 341
BtsIMutI	CAGTG	4 cut(s)	109, 341, 499, 576
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	360, 403, 996
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	86, 414
CviJI	RGCY	7 cut(s)	63, 401, 559, 752, 812, 877, 956
CviKI_1	RGCY	7 cut(s)	63, 401, 559, 752, 812, 877, 956
CviQI	GTAC	2 cut(s)	86, 414
DdeI	CTNAG	4 cut(s)	253, 323, 771, 834
DpnI	GATC	5 cut(s)	159, 177, 244, 519, 1153
DpnII	GATC	5 cut(s)	157, 175, 242, 517, 1151
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco32I	GATATC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	828
Eco81I	CCTNAGG	1 cut(s)	771
Eco91I	GGTNACC	1 cut(s)	1048
EcoO65I	GGTNACC	1 cut(s)	1048
EcoRI	GAATTC	1 cut(s)	1013
EcoRII	CCWGG	4 cut(s)	39, 168, 307, 559
EcoRV	GATATC	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	685
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	1 cut(s)	404
Fnu4HI	GCNGC	3 cut(s)	115, 118, 875
FokI	GGATG	5 cut(s)	135, 677, 709, 959, 1136
Fsp4HI	GCNGC	3 cut(s)	115, 118, 875
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	999
GluI	GCNGC	3 cut(s)	115, 118, 875
HaeII	RGCGCY	1 cut(s)	1001
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	1000
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HinfI	GANTC	6 cut(s)	4, 196, 233, 477, 760, 895
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	55, 314
Hpy166II	GTNNAC	3 cut(s)	305, 698, 1100
Hpy188I	TCNGA	6 cut(s)	324, 482, 610, 837, 910, 1059
Hpy188III	TCNNGA	6 cut(s)	70, 155, 284, 742, 1018, 1114
Hpy8I	GTNNAC	3 cut(s)	305, 698, 1100
HpyAV	CCTTC	3 cut(s)	196, 477, 1129
HpyCH4III	ACNGT	3 cut(s)	334, 580, 934
HpyCH4IV	ACGT	3 cut(s)	84, 416, 1007
HpyCH4V	TGCA	8 cut(s)	193, 346, 421, 683, 698, 709, 730, 818
HpyF3I	CTNAG	4 cut(s)	253, 323, 771, 834
HpySE526I	ACGT	3 cut(s)	84, 416, 1007
HspAI	GCGC	1 cut(s)	998
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	157, 175, 242, 517, 1151
LguI	GCTCTTC	1 cut(s)	530
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	2 cut(s)	104, 886
LweI	GCATC	3 cut(s)	549, 692, 1165
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	3 cut(s)	84, 416, 1007
MaeIII	GTNAC	4 cut(s)	91, 497, 934, 1048
MalI	GATC	5 cut(s)	159, 177, 244, 519, 1153
MboI	GATC	5 cut(s)	157, 175, 242, 517, 1151
MboII	GAAGA	4 cut(s)	191, 547, 714, 904
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	7 cut(s)	65, 591, 614, 828, 1013, 1129, 1143
MlyI	GAGTC	2 cut(s)	13, 486
MmeI	TCCRAC	6 cut(s)	333, 355, 442, 460, 532, 1028
Mph1103I	ATGCAT	1 cut(s)	685
MroI	TCCGGA	1 cut(s)	283
MseI	TTAA	2 cut(s)	513, 1180
MslI	CAYNNNNRTG	2 cut(s)	506, 1170
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	4 cut(s)	41, 170, 309, 561
MunI	CAATTG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	4 cut(s)	41, 170, 309, 561
NdeII	GATC	5 cut(s)	157, 175, 242, 517, 1151
NmeAIII	GCCGAG	1 cut(s)	500
NmuCI	GTSAC	2 cut(s)	91, 497
NsiI	ATGCAT	1 cut(s)	685
NspI	RCATGY	5 cut(s)	92, 362, 683, 769, 822
PaeI	GCATGC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	741
PciI	ACATGT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	530
PctI	GAATGC	1 cut(s)	711
PfeI	GAWTC	4 cut(s)	196, 233, 760, 895
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	116, 119, 876
PleI	GAGTC	2 cut(s)	12, 485
PpsI	GAGTC	2 cut(s)	12, 485
PscI	ACATGT	1 cut(s)	88
Psp1406I	AACGTT	1 cut(s)	1007
Psp6I	CCWGG	4 cut(s)	39, 168, 307, 559
PspEI	GGTNACC	1 cut(s)	1048
PspGI	CCWGG	4 cut(s)	39, 168, 307, 559
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	87, 415
RsaNI	GTAC	2 cut(s)	86, 414
RseI	CAYNNNNRTG	2 cut(s)	506, 1170
SapI	GCTCTTC	1 cut(s)	530
SaqAI	TTAA	2 cut(s)	513, 1180
SatI	GCNGC	3 cut(s)	115, 118, 875
Sau3AI	GATC	5 cut(s)	157, 175, 242, 517, 1151
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	13, 486
ScrFI	CCNGG	4 cut(s)	41, 170, 309, 561
SduI	GDGCHC	1 cut(s)	700
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	3 cut(s)	549, 692, 1165
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	506, 1170
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SpeI	ACTAGT	1 cut(s)	17
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	7 cut(s)	65, 591, 614, 828, 1013, 1129, 1143
SsiI	CCGC	4 cut(s)	102, 115, 203, 432
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	4 cut(s)	39, 168, 307, 559
TaaI	ACNGT	3 cut(s)	334, 580, 934
TaiI	ACGT	3 cut(s)	87, 419, 1010
TasI	AATT	7 cut(s)	65, 591, 614, 828, 1013, 1129, 1143
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	196, 233, 760, 895
Tru1I	TTAA	2 cut(s)	513, 1180
Tru9I	TTAA	2 cut(s)	513, 1180
TscAI	CASTG	4 cut(s)	116, 348, 499, 583
TseFI	GTSAC	2 cut(s)	91, 497
TseI	GCWGC	2 cut(s)	117, 874
Tsp45I	GTSAC	2 cut(s)	91, 497
TspDTI	ATGAA	6 cut(s)	246, 384, 627, 666, 905, 966
TspGWI	ACGGA	1 cut(s)	815
TspRI	CASTG	4 cut(s)	116, 348, 499, 583
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	614, 1013
XceI	RCATGY	5 cut(s)	92, 362, 683, 769, 822
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.