Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

87650 .. 91333

Gene Structure 3684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1000300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAGTAATGGTAGTTTGTGGGCAACTGCAAACACAAAGCCGGCGGCGGCGGTGAGAGTGAAGCGATTGAATTTGAACCAGAAGTACTACTACAAGAGCAGCAGCATTTCGTACTCCTCCTCCTCATCGTCCTCCTCCTTCACGGGGTGCCTCCTGCGAATGAGAATGGGAAAGAGGGCGCGTATGGCTATGGCTTCCAATTGCCTTCATCACGAGCAGGAGAACCATCTCCTCTCCTTGTTGCAGATTCTTCCGCGTGATTTGCATGACAATTTGCTCAATCAACCCCAACCCAAACGAGCTCAACTCTTAGAGGTTATAATGGATTTGGGTCGACTGCCTGAAGCACGCTACCTTGATGATCTTGGCGCCCAATATTTGAGGACAACTGCGGTTTCATTGAAAGAGTTGGAGGATGCTCAAAATGCAGTTGGAGATTTTGGGGGGGACAATAGAGCTGGCATTGCGGGTACCTTGCACAGAATATCAGCAATCAGGAGTAGGAAAGGGATGATCGTTGGATTAACTTGCCGAGTTGGCAGGGCTGTTTCTGGTCATATTGACATGGTTTACGATCTGCTTCAATACAGCAAGAGCATCTTGTTTATCGGAAGGCCCGGGGTTGGTAAGACCACTGTTTTGCGAGAGATTGCTCGAGTCATGTCAGATGAATATCACAAAAGAGTGGTAATTGTTGATACAAGCAATGAAATAGGAGGGGATGGAAATATTCCACATGCAGCAATAGGACGGGCGCGGAGAATGCAGGTAACAGAACCATCCATGCAACACAAAGTTATGATTGAGGCAGTTGAAAACCACATGCCTGAAGTGATCATTGTCGATGAGATTGGCACGGAATCTGAAGCTCTTGCTTGTCGCTCGATTGCCGAGAGAGGGGTCATGCTTATTGCTACTGCTCATGGGCAGAAGCTTGAGAATATAATAAAGAATCCTACTCTAACTGATCTGGTTGGAGGAGTAGAAACTGTTACTTTAGGAGATGGAGAAGCCAAATCTAGAAAATGTCAGAAAACCGTTCTTGAAAGACAAGCATCCCCAACATTTGAGTTCTTAATTGAGATGAGACAGAGGGACTATTGGGTTACACATCAGACAGCAAAGAGTGTAGACCTTCTGCTTTGCGGAAAAATCCCACAGGTCGAGGTAATTTTCTCATGTTGTATATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

398

Amino Acids

43.97

Weight (kDa)

8.94

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	149 - 325	3.7e-15	Sporulation stage III, protein AA
AAA	PF00004	200 - 284	7.4e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	757
Acc65I	GGTACC	1 cut(s)	470
AccB1I	GGYRCC	3 cut(s)	147, 368, 470
AccI	GTMKAC	2 cut(s)	334, 1131
AccII	CGCG	3 cut(s)	181, 256, 757
AciI	CCGC	8 cut(s)	44, 47, 50, 254, 392, 467, 757, 1146
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	3 cut(s)	363, 849, 885
AcyI	GRCGYC	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	147
AfaI	GTAC	3 cut(s)	86, 113, 472
AfiI	CCNNNNNNNGG	3 cut(s)	144, 623, 897
AgsI	TTSAA	6 cut(s)	70, 76, 403, 584, 815, 1046
AluBI	AGCT	4 cut(s)	302, 458, 869, 934
AluI	AGCT	4 cut(s)	302, 458, 869, 934
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	1081
Ama87I	CYCGRG	2 cut(s)	617, 654
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	3 cut(s)	99, 102, 740
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	2 cut(s)	622, 654
Asp718I	GGTACC	1 cut(s)	470
AspLEI	GCGC	3 cut(s)	181, 371, 757
AspS9I	GGNCC	1 cut(s)	615
AsuC2I	CCSGG	2 cut(s)	618, 619
AsuHPI	GGTGA	1 cut(s)	64
AvaI	CYCGRG	2 cut(s)	617, 654
BanI	GGYRCC	3 cut(s)	147, 368, 470
BanII	GRGCYC	1 cut(s)	304
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	111, 114, 752
BccI	CCATC	4 cut(s)	234, 716, 787, 998
BclI	TGATCA	1 cut(s)	834
BcnI	CCSGG	2 cut(s)	618, 619
BcoDI	GTCTC	1 cut(s)	1081
BfaI	CTAG	1 cut(s)	1020
BfoI	RGCGCY	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	757
BglI	GCCNNNNNGGC	1 cut(s)	537
BisI	GCNGC	5 cut(s)	45, 48, 100, 103, 741
BlsI	GCNGC	5 cut(s)	46, 49, 101, 104, 742
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	618, 619
BmeT110I	CYCGRG	2 cut(s)	617, 654
BmgT120I	GGNCC	1 cut(s)	615
BmiI	GGNNCC	3 cut(s)	149, 370, 472
BmrFI	CCNGG	2 cut(s)	618, 619
BmsI	GCATC	3 cut(s)	406, 606, 1064
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpuEI	CTTGAG	1 cut(s)	956
BpuMI	CCSGG	2 cut(s)	618, 619
BsaBI	GATNNNNATC	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	617, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 623, 897
Bse118I	RCCGGY	1 cut(s)	40
Bse3DI	GCAATG	2 cut(s)	462, 712
Bse8I	GATNNNNATC	1 cut(s)	672
BseDI	CCNNGG	2 cut(s)	617, 618
BseGI	GGATG	5 cut(s)	421, 516, 727, 779, 1055
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	3 cut(s)	144, 623, 897
BseMI	GCAATG	2 cut(s)	462, 712
BseRI	GAGGAG	6 cut(s)	106, 109, 112, 124, 221, 993
BseXI	GCAGC	3 cut(s)	111, 114, 752
Bsh1236I	CGCG	3 cut(s)	181, 256, 757
BshFI	GGCC	1 cut(s)	616
BshNI	GGYRCC	3 cut(s)	147, 368, 470
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	2 cut(s)	617, 654
BsiSI	CCGG	2 cut(s)	41, 618
BslFI	GGGAC	2 cut(s)	461, 1109
BslI	CCNNNNNNNGG	3 cut(s)	144, 623, 897
BsmAI	GTCTC	1 cut(s)	1081
BsmFI	GGGAC	2 cut(s)	461, 1109
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	616
BsoBI	CYCGRG	2 cut(s)	617, 654
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	5 cut(s)	361, 513, 574, 834, 967
BspACI	CCGC	8 cut(s)	44, 47, 50, 254, 392, 467, 757, 1146
BspANI	GGCC	1 cut(s)	616
BspFNI	CGCG	3 cut(s)	181, 256, 757
BspLI	GGNNCC	3 cut(s)	149, 370, 472
BspMI	ACCTGC	1 cut(s)	757
BspT107I	GGYRCC	3 cut(s)	147, 368, 470
BsrDI	GCAATG	2 cut(s)	462, 712
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	617, 618
BssMI	GATC	5 cut(s)	361, 513, 574, 834, 967
BssNI	GRCGYC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst4CI	ACNGT	3 cut(s)	637, 991, 1039
BstACI	GRCGYC	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	42, 349, 460
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	5 cut(s)	421, 516, 727, 779, 1055
BstFNI	CGCG	3 cut(s)	181, 256, 757
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	3 cut(s)	181, 371, 757
BstKTI	GATC	5 cut(s)	364, 516, 577, 837, 970
BstMAI	GTCTC	1 cut(s)	1081
BstMBI	GATC	5 cut(s)	361, 513, 574, 834, 967
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 262, 425, 464, 537, 763
BstNSI	RCATGY	2 cut(s)	740, 826
BstSCI	CCNGG	2 cut(s)	616, 617
BstUI	CGCG	3 cut(s)	181, 256, 757
BstV1I	GCAGC	3 cut(s)	111, 114, 752
BsuRI	GGCC	1 cut(s)	616
BtsCI	GGATG	5 cut(s)	421, 516, 727, 779, 1055
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	757
Cac8I	GCNNGC	3 cut(s)	42, 349, 460
CfoI	GCGC	3 cut(s)	181, 371, 757
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	615
Cfr9I	CCCGGG	1 cut(s)	617
Csp6I	GTAC	3 cut(s)	85, 112, 471
CviAII	CATG	9 cut(s)	266, 565, 661, 737, 784, 823, 904, 923, 1179
CviQI	GTAC	3 cut(s)	85, 112, 471
DdeI	CTNAG	1 cut(s)	310
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	5 cut(s)	363, 515, 576, 836, 969
DpnII	GATC	5 cut(s)	361, 513, 574, 834, 967
DraIII	CACNNNGTG	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	3 cut(s)	363, 849, 885
Eco88I	CYCGRG	2 cut(s)	617, 654
EcoICRI	GAGCTC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	304
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
FaeI	CATG	9 cut(s)	269, 568, 664, 740, 787, 826, 907, 926, 1182
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FaqI	GGGAC	2 cut(s)	461, 1109
FatI	CATG	9 cut(s)	265, 564, 660, 736, 783, 822, 903, 922, 1178
FauI	CCCGC	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	834
FblI	GTMKAC	2 cut(s)	334, 1131
Fnu4HI	GCNGC	5 cut(s)	45, 48, 100, 103, 741
FokI	GGATG	5 cut(s)	428, 523, 734, 766, 1042
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	5 cut(s)	45, 48, 100, 103, 741
FspBI	CTAG	1 cut(s)	1020
GlaI	GCGC	3 cut(s)	180, 370, 756
GluI	GCNGC	5 cut(s)	45, 48, 100, 103, 741
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	2 cut(s)	41, 618
HhaI	GCGC	3 cut(s)	181, 371, 757
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	9 cut(s)	269, 568, 664, 740, 787, 826, 907, 926, 1182
Hin6I	GCGC	3 cut(s)	179, 369, 755
HinP1I	GCGC	3 cut(s)	179, 369, 755
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	4 cut(s)	247, 657, 860, 952
HpaII	CCGG	2 cut(s)	41, 618
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	3 cut(s)	335, 571, 1132
Hpy188I	TCNGA	6 cut(s)	611, 667, 865, 1032, 1116, 1193
Hpy188III	TCNNGA	4 cut(s)	212, 496, 1020, 1043
Hpy8I	GTNNAC	3 cut(s)	335, 571, 1132
HpyAV	CCTTC	4 cut(s)	148, 215, 606, 1145
HpyCH4III	ACNGT	3 cut(s)	637, 991, 1039
HpyCH4V	TGCA	8 cut(s)	29, 244, 265, 428, 478, 740, 766, 787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 262, 425, 464, 537, 763
HpyF3I	CTNAG	1 cut(s)	310
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	9 cut(s)	269, 568, 664, 740, 787, 826, 907, 926, 1182
HspAI	GCGC	3 cut(s)	179, 369, 755
KasI	GGCGCC	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	474
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	834
Kzo9I	GATC	5 cut(s)	361, 513, 574, 834, 967
Lsp1109I	GCAGC	3 cut(s)	111, 114, 752
LweI	GCATC	3 cut(s)	406, 606, 1064
MaeI	CTAG	1 cut(s)	1020
MaeIII	GTNAC	3 cut(s)	769, 991, 1105
MalI	GATC	5 cut(s)	363, 515, 576, 836, 969
MboI	GATC	5 cut(s)	361, 513, 574, 834, 967
MboII	GAAGA	1 cut(s)	242
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	6 cut(s)	70, 199, 271, 690, 1077, 1170
Mly113I	GGCGCC	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	666
MmeI	TCCRAC	4 cut(s)	390, 412, 499, 955
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	2 cut(s)	524, 1076
MspI	CCGG	2 cut(s)	41, 618
MspR9I	CCNGG	2 cut(s)	618, 619
MunI	CAATTG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	768
MvnI	CGCG	3 cut(s)	181, 256, 757
MwoI	GCNNNNNNNGC	6 cut(s)	185, 262, 425, 464, 537, 763
NaeI	GCCGGC	1 cut(s)	42
NarI	GGCGCC	1 cut(s)	369
NciI	CCSGG	2 cut(s)	618, 619
NdeII	GATC	5 cut(s)	361, 513, 574, 834, 967
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	9 cut(s)	269, 568, 664, 740, 787, 826, 907, 926, 1182
NlaIV	GGNNCC	3 cut(s)	149, 370, 472
NmeAIII	GCCGAG	2 cut(s)	557, 916
NspI	RCATGY	2 cut(s)	740, 826
PaeR7I	CTCGAG	1 cut(s)	654
PctI	GAATGC	1 cut(s)	768
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	247, 860, 952
PkrI	GCNGC	5 cut(s)	46, 49, 101, 104, 742
PleI	GAGTC	1 cut(s)	665
PluTI	GGCGCC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	665
PsiI	TTATAA	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	149, 370, 472
PspPI	GGNCC	1 cut(s)	615
PspXI	VCTCGAGB	1 cut(s)	654
PsrI	GAACNNNNNNTAC	2 cut(s)	68, 100
RsaI	GTAC	3 cut(s)	86, 113, 472
RsaNI	GTAC	3 cut(s)	85, 112, 471
SacI	GAGCTC	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	524, 1076
SatI	GCNGC	5 cut(s)	45, 48, 100, 103, 741
Sau3AI	GATC	5 cut(s)	361, 513, 574, 834, 967
Sau96I	GGNCC	1 cut(s)	615
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	2 cut(s)	618, 619
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	3 cut(s)	406, 606, 1064
SfoI	GGCGCC	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	654
SmaI	CCCGGG	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	654, 935
SmoI	CTYRAG	2 cut(s)	654, 935
Sse9I	AATT	6 cut(s)	70, 199, 271, 690, 1077, 1170
SsiI	CCGC	8 cut(s)	44, 47, 50, 254, 392, 467, 757, 1146
SspDI	GGCGCC	1 cut(s)	368
SspI	AATATT	2 cut(s)	377, 730
SspMI	CTAG	1 cut(s)	1020
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	616, 617
TaaI	ACNGT	3 cut(s)	637, 991, 1039
TaqI	TCGA	5 cut(s)	334, 655, 843, 884, 1164
TasI	AATT	6 cut(s)	70, 199, 271, 690, 1077, 1170
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	47, 50
TfiI	GAWTC	3 cut(s)	247, 860, 952
Tru1I	TTAA	2 cut(s)	524, 1076
Tru9I	TTAA	2 cut(s)	524, 1076
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	3 cut(s)	99, 102, 740
TspDTI	ATGAA	4 cut(s)	197, 387, 684, 723
TspGWI	ACGGA	1 cut(s)	872
TspMI	CCCGGG	1 cut(s)	617
TspRI	CASTG	1 cut(s)	640
XapI	RAATTY	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	1019
XceI	RCATGY	2 cut(s)	740, 826
XhoI	CTCGAG	1 cut(s)	654
XmaI	CCCGGG	1 cut(s)	617
XmiI	GTMKAC	2 cut(s)	334, 1131
XspI	CTAG	1 cut(s)	1020
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.