Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

106800 .. 111996

Gene Structure 5197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G001000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGATGAGTCATTGTCATAGTAGCTTGTGGGCAAACCCAAACCCGGTGGCGGTTGCGAGAGTCACAAGTTTGATGCGATTGAATTTGAAGAACAATTTGTACTACAAGAACAAGAAGAACAACATATCCTATTCCTATTCCTACTCCTATTCCTTGTCCCTGTGCTGCGTGGGATTGAGAGCGCCTATGGGTTTTGGCTACAGTTCCAGTTGCTTTGATGATCAACATCAGCAGCAACAGCAACAGCAGCAGCAGCAGCATGATGTTGTCGTCCAGGATGATGAGGACGATCTCCGCTCCTTGTTGCAGATTCTTCCACATGATTTACACGAAAATCTTCTCAATGAGCCCAAAAGAGCTCGACTCTTAGAGGTTATATTGGATTTGGGTCGTATGCCGGAAGCACGCTATCTTGGTGAACTTGGTGGCCAATATTTAAGGAGAACAGTGGTATCGTTGGAAGAGTTGGAGCATGCTCAAAATGCTATTGGAGATTTTGGGGGGGATAACAGAGCTGGCATTGAGGGTACCTTGCACAGAATATCAGCCATTAAGAGTAGGAAAGGGCTGATAATTGGATTGACTTGCCGAGTTGGGAGGGCTGTAAGTGGTCAGATTGACATGGTTTACGATATGCTTCAATATGAGAAGAGCATCTTGTTTGTTGGAAGGCCTGGGGTTGGCAAGACCACTGTATTGAGAGAGATTGCTCGTGTCTTGTCAGATGAATTTCACAAAAGAGTGGTAATTATTGATACAAGCAATGAAATAGGAGGGGATGGAAATATTCCACATGCAGCAATAGGAGGAGCCCGGAGAATGCAGGTAACAGAACCATCTATGCAACACAAGGTTATGATAGAGGCAGTAGAGAATCACATGCCTGAGGTGATCATTGTTGATGAGATCGGCACAGCAGCTGAAGCTCTTGCTTGTCGCTCGATTGCTCAGAGAGGGGTCATGCTTATTGCTACTGCTCATGGACAGCAGCTTGAGAATATACTAAAGAATCCTACTCTATCTGATCTGGTTGGAGGAGTAGAAACTGTTACTTTAGGAGATGGTGAAGCCAAAGCTAGAAGATCTCAGAAAACCATTCTTGAAAGGCAAGCACCTCCAACGTTTGAATTCTTAATTGAGATGAGACAGAGGCACTATTGGGTTACACATCAGACAGAAAAGAGTGTAGATATTCTGCTTCGTGGCAAAAGCCCACAGGTCGAGGTCAGGACAAGGGATAAGAAGTTCAAGGTTGTAATAGAAAGATCAAAGTCATATGACGAGTGTGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

432

Amino Acids

48.41

Weight (kDa)

6.95

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	814
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	297
AciI	CCGC	2 cut(s)	50, 295
AclI	AACGTT	1 cut(s)	1121
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	3 cut(s)	82, 728, 1127
AcuI	CTGAAG	1 cut(s)	942
AfaI	GTAC	2 cut(s)	101, 529
AfiI	CCNNNNNNNGG	3 cut(s)	43, 49, 680
AgsI	TTSAA	6 cut(s)	82, 88, 641, 1103, 1127, 1249
AjnI	CCWGG	2 cut(s)	273, 673
AloI	GAACNNNNNNTCC	4 cut(s)	110, 142, 1229, 1261
AluBI	AGCT	7 cut(s)	24, 359, 515, 920, 926, 991, 1076
AluI	AGCT	7 cut(s)	24, 359, 515, 920, 926, 991, 1076
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	1138
AlwNI	CAGNNNCTG	1 cut(s)	920
AoxI	GGCC	2 cut(s)	427, 671
ApeKI	GCWGC	9 cut(s)	165, 232, 247, 250, 253, 256, 797, 917, 988
ApoI	RAATTY	3 cut(s)	82, 728, 1127
Asp700I	GAANNNNTTC	1 cut(s)	336
Asp718I	GGTACC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	184
AsuC2I	CCSGG	2 cut(s)	44, 814
AsuHPI	GGTGA	3 cut(s)	428, 901, 1076
AxyI	CCTNAGG	1 cut(s)	885
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BalI	TGGCCA	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	3 cut(s)	351, 361, 814
BauI	CACGAG	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	9 cut(s)	152, 244, 259, 262, 265, 268, 809, 929, 1000
BccI	CCATC	3 cut(s)	773, 844, 1055
BciT130I	CCWGG	2 cut(s)	275, 675
BclI	TGATCA	2 cut(s)	220, 891
BcnI	CCSGG	2 cut(s)	44, 814
BcoDI	GTCTC	1 cut(s)	1138
BfaI	CTAG	1 cut(s)	1077
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	814
BglII	AGATCT	1 cut(s)	1082
BisI	GCNGC	9 cut(s)	166, 233, 248, 251, 254, 257, 798, 918, 989
BlsI	GCNGC	9 cut(s)	167, 234, 249, 252, 255, 258, 799, 919, 990
Bme1390I	CCNGG	4 cut(s)	44, 275, 675, 814
BmiI	GGNNCC	2 cut(s)	529, 811
BmrFI	CCNGG	4 cut(s)	44, 275, 675, 814
BmsI	GCATC	2 cut(s)	63, 663
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BpuEI	CTTGAG	1 cut(s)	1013
BpuMI	CCSGG	2 cut(s)	44, 814
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 49, 680
Bse1I	ACTGG	1 cut(s)	207
Bse21I	CCTNAGG	1 cut(s)	885
Bse3DI	GCAATG	1 cut(s)	769
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	275, 675
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	2 cut(s)	283, 784
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	43, 49, 680
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	3 cut(s)	876, 962, 1100
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	822, 1050
BseXI	GCAGC	9 cut(s)	152, 244, 259, 262, 265, 268, 809, 929, 1000
BshFI	GGCC	2 cut(s)	429, 673
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	3 cut(s)	44, 398, 814
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	3 cut(s)	43, 49, 680
BsmAI	GTCTC	1 cut(s)	1138
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	2 cut(s)	429, 673
Bsp1286I	GDGCHC	3 cut(s)	351, 361, 814
Bsp143I	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
BspACI	CCGC	2 cut(s)	50, 295
BspANI	GGCC	2 cut(s)	429, 673
BspCNI	CTCAG	3 cut(s)	877, 961, 1099
BspLI	GGNNCC	2 cut(s)	529, 811
BspMI	ACCTGC	1 cut(s)	814
BspQI	GCTCTTC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
BssSI	CACGAG	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	2 cut(s)	275, 675
Bst4CI	ACNGT	4 cut(s)	203, 448, 694, 1048
Bst6I	CTCTTC	2 cut(s)	456, 644
BstC8I	GCNNGC	4 cut(s)	406, 474, 517, 1110
BstDEI	CTNAG	4 cut(s)	367, 885, 948, 1086
BstF5I	GGATG	2 cut(s)	283, 784
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	7 cut(s)	223, 292, 894, 909, 1027, 1085, 1268
BstMAI	GTCTC	1 cut(s)	1138
BstMBI	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
BstMWI	GCNNNNNNNGC	6 cut(s)	238, 247, 253, 256, 482, 923
BstNI	CCWGG	2 cut(s)	275, 675
BstNSI	RCATGY	3 cut(s)	476, 797, 883
BstSCI	CCNGG	4 cut(s)	42, 273, 673, 812
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	9 cut(s)	152, 244, 259, 262, 265, 268, 809, 929, 1000
BstX2I	RGATCY	1 cut(s)	1082
BstYI	RGATCY	1 cut(s)	1082
Bsu36I	CCTNAGG	1 cut(s)	885
BsuRI	GGCC	2 cut(s)	429, 673
BtsCI	GGATG	2 cut(s)	283, 784
BtsIMutI	CAGTG	2 cut(s)	453, 690
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	4 cut(s)	406, 474, 517, 1110
CaiI	CAGNNNCTG	1 cut(s)	920
CfoI	GCGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	100, 528
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	8 cut(s)	260, 320, 473, 622, 794, 880, 961, 980
CviQI	GTAC	2 cut(s)	100, 528
DdeI	CTNAG	4 cut(s)	367, 885, 948, 1086
DpnI	GATC	7 cut(s)	222, 291, 893, 908, 1026, 1084, 1267
DpnII	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	456, 644
EarI	CTCTTC	2 cut(s)	456, 644
Ecl136II	GAGCTC	1 cut(s)	359
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	3 cut(s)	351, 361, 814
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	942
Eco81I	CCTNAGG	1 cut(s)	885
EcoICRI	GAGCTC	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	1127
EcoRII	CCWGG	2 cut(s)	273, 673
EcoT38I	GRGCYC	3 cut(s)	351, 361, 814
FaeI	CATG	8 cut(s)	263, 323, 476, 625, 797, 883, 964, 983
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	8 cut(s)	259, 319, 472, 621, 793, 879, 960, 979
FauNDI	CATATG	1 cut(s)	1276
FbaI	TGATCA	2 cut(s)	220, 891
Fnu4HI	GCNGC	9 cut(s)	166, 233, 248, 251, 254, 257, 798, 918, 989
FokI	GGATG	2 cut(s)	290, 791
FriOI	GRGCYC	3 cut(s)	351, 361, 814
Fsp4HI	GCNGC	9 cut(s)	166, 233, 248, 251, 254, 257, 798, 918, 989
FspBI	CTAG	1 cut(s)	1077
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	9 cut(s)	166, 233, 248, 251, 254, 257, 798, 918, 989
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	429, 673
HapII	CCGG	3 cut(s)	44, 398, 814
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	8 cut(s)	263, 323, 476, 625, 797, 883, 964, 983
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	6 cut(s)	7, 60, 310, 363, 874, 1009
HpaII	CCGG	3 cut(s)	44, 398, 814
HphI	GGTGA	3 cut(s)	428, 901, 1076
Hpy166II	GTNNAC	2 cut(s)	419, 628
Hpy188I	TCNGA	6 cut(s)	615, 724, 951, 1024, 1089, 1173
Hpy188III	TCNNGA	2 cut(s)	1100, 1228
Hpy8I	GTNNAC	2 cut(s)	419, 628
HpyAV	CCTTC	1 cut(s)	663
HpyCH4III	ACNGT	4 cut(s)	203, 448, 694, 1048
HpyCH4IV	ACGT	1 cut(s)	1121
HpyCH4V	TGCA	5 cut(s)	307, 535, 797, 823, 844
HpyF10VI	GCNNNNNNNGC	6 cut(s)	238, 247, 253, 256, 482, 923
HpyF3I	CTNAG	4 cut(s)	367, 885, 948, 1086
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	8 cut(s)	263, 323, 476, 625, 797, 883, 964, 983
HspAI	GCGC	1 cut(s)	182
KpnI	GGTACC	1 cut(s)	531
Ksp22I	TGATCA	2 cut(s)	220, 891
Kzo9I	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	3 cut(s)	302, 469, 809
Lsp1109I	GCAGC	9 cut(s)	152, 244, 259, 262, 265, 268, 809, 929, 1000
LweI	GCATC	2 cut(s)	63, 663
MaeI	CTAG	1 cut(s)	1077
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	4 cut(s)	61, 826, 1048, 1162
MalI	GATC	7 cut(s)	222, 291, 893, 908, 1026, 1084, 1267
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
MboII	GAAGA	7 cut(s)	100, 127, 305, 329, 473, 661, 1092
MflI	RGATCY	1 cut(s)	1082
MhlI	GDGCHC	3 cut(s)	351, 361, 814
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	7 cut(s)	82, 94, 573, 728, 747, 1127, 1134
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	3 cut(s)	16, 69, 357
MmeI	TCCRAC	5 cut(s)	438, 447, 646, 1012, 1142
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	4 cut(s)	437, 552, 1133, 1294
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	3 cut(s)	44, 398, 814
MspR9I	CCNGG	4 cut(s)	44, 275, 675, 814
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	2 cut(s)	275, 675
MwoI	GCNNNNNNNGC	6 cut(s)	238, 247, 253, 256, 482, 923
NciI	CCSGG	2 cut(s)	44, 814
NdeI	CATATG	1 cut(s)	1276
NdeII	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
NlaIII	CATG	8 cut(s)	263, 323, 476, 625, 797, 883, 964, 983
NlaIV	GGNNCC	2 cut(s)	529, 811
NmeAIII	GCCGAG	1 cut(s)	614
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	3 cut(s)	476, 797, 883
PaeI	GCATGC	1 cut(s)	476
PceI	AGGCCT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	644
PctI	GAATGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	310, 874, 1009
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	9 cut(s)	167, 234, 249, 252, 255, 258, 799, 919, 990
PleI	GAGTC	3 cut(s)	15, 68, 357
PpsI	GAGTC	3 cut(s)	15, 68, 357
Psp124BI	GAGCTC	1 cut(s)	361
Psp1406I	AACGTT	1 cut(s)	1121
Psp6I	CCWGG	2 cut(s)	273, 673
PspGI	CCWGG	2 cut(s)	273, 673
PspN4I	GGNNCC	2 cut(s)	529, 811
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	1082
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	2 cut(s)	101, 529
RsaNI	GTAC	2 cut(s)	100, 528
SacI	GAGCTC	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	4 cut(s)	437, 552, 1133, 1294
SatI	GCNGC	9 cut(s)	166, 233, 248, 251, 254, 257, 798, 918, 989
Sau3AI	GATC	7 cut(s)	220, 289, 891, 906, 1024, 1082, 1265
SchI	GAGTC	3 cut(s)	16, 69, 357
ScrFI	CCNGG	4 cut(s)	44, 275, 675, 814
SduI	GDGCHC	3 cut(s)	351, 361, 814
SfaNI	GCATC	2 cut(s)	63, 663
SfcI	CTRYAG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	7 cut(s)	82, 94, 573, 728, 747, 1127, 1134
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	2 cut(s)	50, 295
SspI	AATATT	2 cut(s)	434, 787
SspMI	CTAG	1 cut(s)	1077
SstI	GAGCTC	1 cut(s)	361
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	4 cut(s)	42, 273, 673, 812
TaaI	ACNGT	4 cut(s)	203, 448, 694, 1048
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	3 cut(s)	361, 941, 1221
TasI	AATT	7 cut(s)	82, 94, 573, 728, 747, 1127, 1134
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	3 cut(s)	310, 874, 1009
Tru1I	TTAA	4 cut(s)	437, 552, 1133, 1294
Tru9I	TTAA	4 cut(s)	437, 552, 1133, 1294
TscAI	CASTG	2 cut(s)	453, 697
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	9 cut(s)	165, 232, 247, 250, 253, 256, 797, 917, 988
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	741, 780
TspRI	CASTG	2 cut(s)	453, 697
XapI	RAATTY	3 cut(s)	82, 728, 1127
XceI	RCATGY	3 cut(s)	476, 797, 883
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.