Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006008

Physical Location & Seq

Genomic Coordinates Reverse (-)

67453031 .. 67454621

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0491700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGATGGCCAAGGAGTACCTGGATCTGACCGACCACGACTCAGAGGCCGTATCGCAACTCGACATTGCAGCTCAACGAGCCGGGGTCGAGTTCTACGAGGTCTTCGCTCTTCGAGGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTTTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTTGCCACTGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTAATTCTACAATTTATTGTCTCGGTCGCCCTATGAATGTTTCAATAGACATGTCCATCTCGTATATGTCAAAGGCAAAGATCGATGATGAATTAGAGATCACCTCAAAGAGGCTAGGACAAAGAGGACGTTATTTTGGAACAATAGTGGTGCTGAAAAACAAAGCAACTGGGGAGATTATTGCTGAAGGTCGACATTCATTGTTTCGTTCAAATTTTGTTCCCAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_30

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

7.76

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33290 AT1G33290 AT1G33290
fragaria_vesca	FvH4_2g00120 FvH4_2g00120 FvH4_2g00120 FvH4_2g00120
malus_domestica	MD05G1000300.v1.1
prunus_persica	Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1 Prupe.8G001000_v2.0.a1
pyrus_communis	pycom215g00070
rosa_chinensis	RchiOBHm_Chr6g0249381
rosa_laevigata	RLG00000015585
rosa_multiflora	Rmu_sc0000278.1_g000005
rosa_roxburghii	Rroxscaffold_7G00217780
rosa_rugosa	Rorug05G0491500 Rorug05G0491600 Rorug05G0491700 Rorug05G0491800
rosa_samantha	Rh6AG001600 Rh6BG008500 Rh6CG000600 Rh6DG000700
rosa_wichuraiana	Rw6G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	129, 433
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	199, 454
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	351
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	166, 285, 453
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	2 cut(s)	74, 194
AluI	AGCT	2 cut(s)	74, 194
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	9, 48
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	199, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	2 cut(s)	85, 144
AsuHPI	GGTGA	2 cut(s)	175, 334
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	2 cut(s)	85, 144
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	3 cut(s)	23, 85, 144
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	3 cut(s)	23, 85, 144
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpuMI	CCSGG	2 cut(s)	85, 144
Bsa29I	ATCGAT	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	12, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	214, 415
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	12, 84
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	214, 415
BseXI	GCAGC	1 cut(s)	83
Bsh1285I	CGRYCG	2 cut(s)	133, 268
BshFI	GGCC	2 cut(s)	11, 50
BshVI	ATCGAT	1 cut(s)	324
BsiEI	CGRYCG	2 cut(s)	133, 268
BsiSI	CCGG	2 cut(s)	84, 144
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	11, 50
Bsp143I	GATC	3 cut(s)	25, 321, 339
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	11, 50
BspCNI	CTCAG	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	33
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	214, 415
BssECI	CCNNGG	2 cut(s)	12, 84
BssMI	GATC	3 cut(s)	25, 321, 339
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	28, 324, 342
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	25, 321, 339
BstMCI	CGRYCG	2 cut(s)	133, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 212
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	21, 83, 142
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	11, 50
BsuTUI	ATCGAT	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	6 cut(s)	11, 50, 74, 83, 194, 355
CviKI_1	RGCY	6 cut(s)	11, 50, 74, 83, 194, 355
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	3 cut(s)	27, 323, 341
DpnII	GATC	3 cut(s)	25, 321, 339
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	295
FaiI	YATR	4 cut(s)	275, 293, 306, 308
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	291
FauI	CCCGC	1 cut(s)	185
FblI	GTMKAC	2 cut(s)	129, 433
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	11, 50
HapII	CCGG	2 cut(s)	84, 144
Hin1II	CATG	1 cut(s)	295
HincII	GTYRAC	2 cut(s)	130, 434
HindII	GTYRAC	2 cut(s)	130, 434
HinfI	GANTC	4 cut(s)	41, 126, 135, 147
HpaII	CCGG	2 cut(s)	84, 144
HphI	GGTGA	2 cut(s)	175, 334
Hpy166II	GTNNAC	2 cut(s)	130, 434
Hpy188I	TCNGA	4 cut(s)	30, 46, 125, 473
Hpy8I	GTNNAC	2 cut(s)	130, 434
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	4, 71, 215, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 212
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	25, 321, 339
LguI	GCTCTTC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	8, 35, 97, 157, 180, 195, 396
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	370
MalI	GATC	3 cut(s)	27, 323, 341
MboI	GATC	3 cut(s)	25, 321, 339
MboII	GAAGA	2 cut(s)	97, 104
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	6 cut(s)	199, 216, 244, 252, 332, 454
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	4 cut(s)	35, 135, 141, 144
MnlI	CCTC	8 cut(s)	40, 94, 110, 183, 191, 345, 355, 359
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	2 cut(s)	84, 144
MspR9I	CCNGG	3 cut(s)	23, 85, 144
MunI	CAATTG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	80, 212
NciI	CCSGG	2 cut(s)	85, 144
NdeII	GATC	3 cut(s)	25, 321, 339
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	295
PciI	ACATGT	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 121, 135
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	4 cut(s)	35, 134, 141, 143
PpsI	GAGTC	4 cut(s)	35, 134, 141, 143
PpuMI	RGGWCCY	1 cut(s)	169
PscI	ACATGT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SalI	GTCGAC	2 cut(s)	128, 432
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	3 cut(s)	25, 321, 339
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	4 cut(s)	35, 135, 141, 144
ScrFI	CCNGG	3 cut(s)	23, 85, 144
SetI	ASST	9 cut(s)	24, 76, 105, 171, 196, 228, 347, 373, 433
SfaNI	GCATC	1 cut(s)	129
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	6 cut(s)	199, 216, 244, 252, 332, 454
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	21, 83, 142
StyI	CCWWGG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	7 cut(s)	63, 90, 115, 129, 138, 324, 433
TaqII	GACCGA	3 cut(s)	47, 147, 254
TasI	AATT	6 cut(s)	199, 216, 244, 252, 332, 454
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	290, 345, 429
TspRI	CASTG	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	349
XapI	RAATTY	2 cut(s)	199, 454
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	129, 433
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.