FvH4_2g04720

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010134
Physical Location & Seq
Reverse (-)
3663110 .. 3667634
4525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04720.t3

Sequence Viewer

Length: 1203 bp
ATGGCCACCCTTCGCTCCTTCATCTCCTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCCGCTGCTTCGCTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTATCTTCCGCCGCGTCGCTAACCCCAGAAGATTCTCGCGCCTCGTTCTCGCTTCTTCTTCGTCGTCTCCGCCTTCTCCTTTCGACGATCTCGGAAGGCCAACGCGTCCGGTTCAGTCCTCCAAGAAATCGGTGGTGTCGAATTTGATACAAGAGATAGAGCCCTTGAACGTGAGCCTTATTCAGAAAGATGTTCCGCCTACGACTGTGGATGCTATGAAGAGGACTATCTCGGGCATGCTGGGCTTACTTCCGTCTGATCAATTCCAAGTTGTTATTGAGGCTCTATGGGAACCACTCTCCAAGTTGTTGGTTTCTTCAATGATGACCGGGTATACTCTAAGGAATGCTGAATATAGACTTTGCCTAGAACGAAATTTTGATGTATCTGAAGAAAATCTTGAAAAGCAAACATCAGAAGATTCTAAAATTTTGCTTGAAAGTGCAAACCTAATCAAATTTCATGCAAAAGACGAGTTGTCACCTAAGGCTGGAGAAGTCATGGAAGATCCATTGGAGAATCTTGATATTCAAGGCCTTGGCGAAGTGTCACAGGAGGTTCAACAATATATTCTCCATTTGCAGGCTCATTTGTCTTCTGCCAAAAAGGAACTCCATGATGTCAAAAGGAAAAGTGCTGCCCTTCAAATGCAACAGTTTGTTGGGGAAGAAAAGAATGATTTACTGGACTATTTAAGATCACTACATCCCGAAAAGGTAGCTGAGCTATCAGAACCAACATCCCCTGAACTTAAAGAAATAATCCACTCTGTTGTCCATGGTCTACTTGCAACCCTCTCTCCAAAGATGCATTCTAAGGCACCTCCTTCATCTGAGAATACCTCAGCTGGAGCAATAAATGTTGGCAGTGAAGATTGTGCTGAACTACTTGAGAACACGTCACTACAGTTTCAGCCCCTTATTCTATTAACACGGGACTACCTAGCACGCCTCCTCTTCTGGTGCATGCTGTTAGGACACTACCTTAAGGGCCTTGAGTATCGAATGGAGCTAACCGAACTTCTTGCCCTGACTAGTGATCCTGAAGGTGATACCCCTGATGGGCAACAAATTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

401

Amino Acids

44.17

Weight (kDa)

5.26

Isoelectric Point (pI)

70.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 89 - 168 1.6e-25 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 943
AccI GTMKAC 2 cut(s) 458, 907
AccII CGCG 3 cut(s) 138, 163, 229
AciI CCGC 6 cut(s) 77, 122, 133, 136, 194, 320
AclWI GGATC 2 cut(s) 626, 1157
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 265, 499, 552, 581
AcuI CTGAAG 2 cut(s) 534, 1188
AfiI CCNNNNNNNGG 3 cut(s) 614, 706, 1185
AflII CTTAAG 1 cut(s) 1109
AflIII ACRYGT 2 cut(s) 227, 1020
AgsI TTSAA 7 cut(s) 292, 444, 527, 563, 656, 686, 770
AhdI GACNNNNNGTC 1 cut(s) 601
AhlI ACTAGT 1 cut(s) 1157
AjiI CACGTC 1 cut(s) 1023
AjuI GAANNNNNNNTTGG 2 cut(s) 919, 951
AluBI AGCT 4 cut(s) 845, 850, 971, 1135
AluI AGCT 4 cut(s) 845, 850, 971, 1135
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 2 cut(s) 626, 1157
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 4 cut(s) 3, 221, 658, 1114
ApeKI GCWGC 2 cut(s) 79, 761
ApoI RAATTY 4 cut(s) 265, 499, 552, 581
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 1114
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 597, 1184
AvaI CYCGRG 1 cut(s) 355
AxyI CCTNAGG 1 cut(s) 609
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 943
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 711
BbvCI CCTCAGC 1 cut(s) 967
BbvI GCAGC 2 cut(s) 66, 748
BccI CCATC 1 cut(s) 1178
BcgI CGANNNNNNTGC 2 cut(s) 1130, 1164
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 195
BcuI ACTAGT 1 cut(s) 1157
BfaI CTAG 3 cut(s) 491, 1067, 1158
BfmI CTRYAG 1 cut(s) 1028
BfrI CTTAAG 1 cut(s) 1109
BisI GCNGC 3 cut(s) 80, 136, 762
BlpI GCTNAGC 1 cut(s) 846
BlsI GCNGC 3 cut(s) 81, 137, 763
Bme1390I CCNGG 1 cut(s) 454
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 355
BmgBI CACGTC 1 cut(s) 1023
BmgT120I GGNCC 1 cut(s) 1114
BmiI GGNNCC 2 cut(s) 417, 945
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 2 cut(s) 325, 921
BpiI GAAGAC 1 cut(s) 711
BplI GAGNNNNNCTC 2 cut(s) 950, 982
BpmI CTGGAG 2 cut(s) 636, 993
Bpu10I CCTNAGC 1 cut(s) 967
Bpu1102I GCTNAGC 1 cut(s) 846
BpuEI CTTGAG 2 cut(s) 1034, 1139
BpuMI CCSGG 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 661, 901
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 3 cut(s) 614, 706, 1185
Bse1I ACTGG 1 cut(s) 813
Bse21I CCTNAGG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 661, 901
BseGI GGATG 3 cut(s) 340, 829, 863
BseLI CCNNNNNNNGG 3 cut(s) 614, 706, 1185
BseMII CTCAG 3 cut(s) 837, 948, 981
BseNI ACTGG 1 cut(s) 813
BseXI GCAGC 2 cut(s) 66, 748
BseYI CCCAGC 1 cut(s) 364
Bsh1236I CGCG 3 cut(s) 138, 163, 229
BshFI GGCC 4 cut(s) 5, 223, 660, 1116
BshNI GGYRCC 1 cut(s) 943
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 2 cut(s) 233, 453
BslFI GGGAC 1 cut(s) 1073
BslI CCNNNNNNNGG 3 cut(s) 614, 706, 1185
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 1073
BsmI GAATGC 2 cut(s) 475, 934
BsnI GGCC 4 cut(s) 5, 223, 660, 1116
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 5 cut(s) 211, 382, 631, 821, 1162
Bsp1720I GCTNAGC 1 cut(s) 846
Bsp19I CCATGG 1 cut(s) 901
BspACI CCGC 6 cut(s) 77, 122, 133, 136, 194, 320
BspANI GGCC 4 cut(s) 5, 223, 660, 1116
BspCNI CTCAG 3 cut(s) 838, 949, 980
BspFNI CGCG 3 cut(s) 138, 163, 229
BspLI GGNNCC 2 cut(s) 417, 945
BspPI GGATC 2 cut(s) 626, 1157
BspT107I GGYRCC 1 cut(s) 943
BspTI CTTAAG 1 cut(s) 1109
BsrI ACTGG 1 cut(s) 813
BssECI CCNNGG 2 cut(s) 661, 901
BssMI GATC 5 cut(s) 211, 382, 631, 821, 1162
BssNAI GTATAC 1 cut(s) 459
BssT1I CCWWGG 2 cut(s) 661, 901
Bst1107I GTATAC 1 cut(s) 459
Bst4CI ACNGT 3 cut(s) 331, 780, 1032
Bst6I CTCTTC 4 cut(s) 40, 78, 338, 1085
BstAFI CTTAAG 1 cut(s) 1109
BstC8I GCNNGC 4 cut(s) 362, 708, 1072, 1091
BstDEI CTNAG 6 cut(s) 464, 609, 846, 939, 957, 967
BstDSI CCRYGG 1 cut(s) 901
BstF5I GGATG 3 cut(s) 340, 829, 863
BstFNI CGCG 3 cut(s) 138, 163, 229
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 5 cut(s) 214, 385, 634, 824, 1165
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 5 cut(s) 211, 382, 631, 821, 1162
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNSI RCATGY 2 cut(s) 364, 1093
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 1028
BstUI CGCG 3 cut(s) 138, 163, 229
BstV1I GCAGC 2 cut(s) 66, 748
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 631
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 1 cut(s) 631
BstZ17I GTATAC 1 cut(s) 459
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 4 cut(s) 5, 223, 660, 1116
BtgI CCRYGG 1 cut(s) 901
BtrI CACGTC 1 cut(s) 1023
BtsCI GGATG 3 cut(s) 340, 829, 863
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 1 cut(s) 997
Cac8I GCNNGC 4 cut(s) 362, 708, 1072, 1091
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 1114
CseI GACGC 2 cut(s) 127, 218
CviAII CATG 6 cut(s) 361, 587, 625, 740, 902, 1090
DdeI CTNAG 6 cut(s) 464, 609, 846, 939, 957, 967
DpnI GATC 5 cut(s) 213, 384, 633, 823, 1164
DpnII GATC 5 cut(s) 211, 382, 631, 821, 1162
DriI GACNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 40, 78, 338, 1085
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 4 cut(s) 40, 78, 338, 1085
EciI GGCGGA 4 cut(s) 111, 122, 183, 309
Eco130I CCWWGG 2 cut(s) 661, 901
Eco147I AGGCCT 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 288
Eco57I CTGAAG 2 cut(s) 534, 1188
Eco81I CCTNAGG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 1114
EcoT14I CCWWGG 2 cut(s) 661, 901
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 2 cut(s) 661, 901
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 6 cut(s) 364, 590, 628, 743, 905, 1093
FalI AAGNNNNNCTT 2 cut(s) 507, 539
FaqI GGGAC 1 cut(s) 1073
FatI CATG 6 cut(s) 360, 586, 624, 739, 901, 1089
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 2 cut(s) 458, 907
Fnu4HI GCNGC 3 cut(s) 80, 136, 762
FokI GGATG 3 cut(s) 347, 816, 850
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 80, 136, 762
FspBI CTAG 3 cut(s) 491, 1067, 1158
GlaI GCGC 1 cut(s) 164
GluI GCNGC 3 cut(s) 80, 136, 762
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 2 cut(s) 636, 993
HaeIII GGCC 4 cut(s) 5, 223, 660, 1116
HapII CCGG 2 cut(s) 233, 453
HgaI GACGC 2 cut(s) 127, 218
HhaI GCGC 1 cut(s) 165
Hin1II CATG 6 cut(s) 364, 590, 628, 743, 905, 1093
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 3 cut(s) 156, 545, 643
HpaII CCGG 2 cut(s) 233, 453
HphI GGTGA 2 cut(s) 597, 1184
Hpy166II GTNNAC 2 cut(s) 459, 908
Hpy188I TCNGA 7 cut(s) 218, 309, 382, 514, 541, 856, 958
Hpy188III TCNNGA 4 cut(s) 524, 647, 833, 1166
Hpy8I GTNNAC 2 cut(s) 459, 908
Hpy99I CGWCG 3 cut(s) 143, 190, 212
HpyAV CCTTC 9 cut(s) 20, 28, 40, 102, 207, 213, 776, 960, 1163
HpyCH4III ACNGT 3 cut(s) 331, 780, 1032
HpyCH4IV ACGT 2 cut(s) 294, 1022
HpyCH4V TGCA 7 cut(s) 569, 590, 706, 775, 914, 934, 1089
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 6 cut(s) 464, 609, 846, 939, 957, 967
HpySE526I ACGT 2 cut(s) 294, 1022
Hsp92II CATG 6 cut(s) 364, 590, 628, 743, 905, 1093
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 5 cut(s) 211, 382, 631, 821, 1162
LmnI GCTCC 3 cut(s) 20, 974, 1132
Lsp1109I GCAGC 2 cut(s) 66, 748
LweI GCATC 2 cut(s) 325, 921
MaeI CTAG 3 cut(s) 491, 1067, 1158
MaeII ACGT 2 cut(s) 294, 1022
MaeIII GTNAC 3 cut(s) 603, 672, 1023
MalI GATC 5 cut(s) 213, 384, 633, 823, 1164
MboI GATC 5 cut(s) 211, 382, 631, 821, 1162
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 265, 386, 499, 552, 581, 1194
MluI ACGCGT 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 936
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 818, 876, 1052, 1110
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 79, 971
MspCI CTTAAG 1 cut(s) 1109
MspI CCGG 2 cut(s) 233, 453
MspR9I CCNGG 1 cut(s) 454
Mva1269I GAATGC 2 cut(s) 475, 934
MvnI CGCG 3 cut(s) 138, 163, 229
MwoI GCNNNNNNNGC 1 cut(s) 366
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 901
NdeII GATC 5 cut(s) 211, 382, 631, 821, 1162
NlaIII CATG 6 cut(s) 364, 590, 628, 743, 905, 1093
NlaIV GGNNCC 2 cut(s) 417, 945
NmuCI GTSAC 3 cut(s) 603, 672, 1023
NsiI ATGCAT 1 cut(s) 936
NspI RCATGY 2 cut(s) 364, 1093
PaeI GCATGC 2 cut(s) 364, 1093
PceI AGGCCT 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PctI GAATGC 2 cut(s) 475, 934
PfeI GAWTC 3 cut(s) 156, 545, 643
PkrI GCNGC 3 cut(s) 81, 137, 763
PspFI CCCAGC 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 417, 945
PspPI GGNCC 1 cut(s) 1114
PsuI RGATCY 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 971
SaqAI TTAA 4 cut(s) 818, 876, 1052, 1110
SatI GCNGC 3 cut(s) 80, 136, 762
Sau3AI GATC 5 cut(s) 211, 382, 631, 821, 1162
Sau96I GGNCC 1 cut(s) 1114
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 2 cut(s) 325, 921
SfcI CTRYAG 1 cut(s) 1028
SmlI CTYRAG 3 cut(s) 1013, 1109, 1118
SmoI CTYRAG 3 cut(s) 1013, 1109, 1118
SpeI ACTAGT 1 cut(s) 1157
SphI GCATGC 2 cut(s) 364, 1093
Sse9I AATT 6 cut(s) 265, 386, 499, 552, 581, 1194
SseBI AGGCCT 1 cut(s) 660
SsiI CCGC 6 cut(s) 77, 122, 133, 136, 194, 320
SspMI CTAG 3 cut(s) 491, 1067, 1158
StuI AGGCCT 1 cut(s) 660
StyD4I CCNGG 1 cut(s) 452
StyI CCWWGG 2 cut(s) 661, 901
TaaI ACNGT 3 cut(s) 331, 780, 1032
TaiI ACGT 2 cut(s) 297, 1025
TaqI TCGA 3 cut(s) 207, 263, 1126
TasI AATT 6 cut(s) 265, 386, 499, 552, 581, 1194
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 3 cut(s) 156, 545, 643
Tru1I TTAA 4 cut(s) 818, 876, 1052, 1110
Tru9I TTAA 4 cut(s) 818, 876, 1052, 1110
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 3 cut(s) 603, 672, 1023
TseI GCWGC 2 cut(s) 79, 761
Tsp45I GTSAC 3 cut(s) 603, 672, 1023
TspDTI ATGAA 4 cut(s) 10, 356, 575, 942
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 1 cut(s) 997
Vha464I CTTAAG 1 cut(s) 1109
XapI RAATTY 4 cut(s) 265, 499, 552, 581
XceI RCATGY 2 cut(s) 364, 1093
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 458, 907
XspI CTAG 3 cut(s) 491, 1067, 1158
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.