Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Forward (+)

59454825 .. 59458997

Gene Structure 4173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCCGCTCTCCGCTCCTTCATCTCCTCCTCTTCTTCTCTTCCTCTACTCCCTCCTCCTCTGCTTCGCTTTTCTCCTCCTCCTCCTATCTTCCGCCACGTCGCTACCCCTAGAAGATTCTCGCGCCTGGTTCTCGCTTCTTCTTCTTCTTCGGCTTCTCCTTTCGACGATCTCAGACGTCCGATTCAATCCTCCAAGAAATCAGTTCTCTCAAATTTGATACAAGAGATAGAGCCCTTGAACGTGAGCCTCATTCAGAAGGATGTTCCACCTATGACTGTGGATGCTATGAAAAGAACTATTTCGGGCATGTTGGGCTTACTTCCATCTGATCAATTTCAAGTTGTTATTGAAGCTTTATGGGAACCCCTCTCCAAGTTGTTGGTTTCTTCGATGATGACTGGATATACTCTAAGGAATGCTGAATATAGACTCTGCTTAGAACGAAACTTTGATATATCTGAAGAAAATCTTGAAAAGCAAACATCAGAAGATTCTAAAGTTGATTTACAAGGGATGCTGCTTGAAAGTGCAAATATAATCAAATTTCATGCAAAAGACGAGTTTTCACCTAAGGCTGGAGAAGTCATGGAAGACCCATTGGAGAATCTTGATATTCAAGGCCTCGGTGAAGTGTCACCTGAGGTTCAACAATATATTCTTCATTTGCAGGCTCATTTGTCTTCTGCCAAAAAGCTTGTTACGTCTTTAAAGCCTGATGAGGACACTTCATCTGGGAGTGGTTATGTAGCTGAGCTATCAGAACCAACATCCCCTGAACTTAAAGAAATAATCCACTCTGTTGTCCATGGTCTACTTGCAACCCTTTCTCCAAAGATGCATTCTAAGGCGCCTCCTTTATCTGAGAACACCTCAGCTGGAGCAATAAATGTCGGAAGTGAAGATTGTGCTGAACTAGTTGAAAACACATCACTTCAATTTCAGCCGCTTATTCTATTAACGCGGGACTACCTAGCACGCCTCCTCTTCTGGTGCATGCTGTTAGGACACTACCTTAAGGGCCTCGAGTATCGAATGGAGCTAACTGAACTTCTTGCCCTGACAAGCGATCCTGAAGGTGATACCCCTGATGGGCAACAAATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

370

Amino Acids

40.75

Weight (kDa)

4.98

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	70 - 151	6.1e-26	Protein of unknown function (DUF760)
DUF760	PF05542	250 - 352	8.4e-18	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	850
AccBSI	CCGCTC	2 cut(s)	8, 15
AccI	GTMKAC	1 cut(s)	814
AccII	CGCG	2 cut(s)	124, 964
AciI	CCGC	5 cut(s)	6, 13, 94, 947, 964
AclWI	GGATC	1 cut(s)	1064
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	214, 545
AcuI	CTGAAG	2 cut(s)	483, 1095
AcyI	GRCGYC	2 cut(s)	178, 851
AfiI	CCNNNNNNNGG	2 cut(s)	578, 1092
AflII	CTTAAG	1 cut(s)	1016
AhlI	ACTAGT	1 cut(s)	916
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	826, 858
AluBI	AGCT	6 cut(s)	356, 697, 752, 757, 878, 1042
AluI	AGCT	6 cut(s)	356, 697, 752, 757, 878, 1042
AlwI	GGATC	1 cut(s)	1064
Ama87I	CYCGRG	1 cut(s)	1025
AoxI	GGCC	3 cut(s)	3, 622, 1021
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	2 cut(s)	214, 545
Asp700I	GAANNNNTTC	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	126, 853
AspS9I	GGNCC	1 cut(s)	1021
AsuHPI	GGTGA	4 cut(s)	561, 630, 641, 1091
AvaI	CYCGRG	1 cut(s)	1025
AxyI	CCTNAGG	2 cut(s)	573, 642
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	600, 675
BbvCI	CCTCAGC	1 cut(s)	874
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	2 cut(s)	334, 1085
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	331
BcuI	ACTAGT	1 cut(s)	916
BfaI	CTAG	3 cut(s)	111, 917, 974
BfoI	RGCGCY	1 cut(s)	854
BfrI	CTTAAG	1 cut(s)	1016
BisI	GCNGC	3 cut(s)	6, 521, 947
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	3 cut(s)	7, 522, 948
Bme1390I	CCNGG	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	1025
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	1021
BmiI	GGNNCC	2 cut(s)	366, 852
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	274, 507, 828
BpiI	GAAGAC	2 cut(s)	600, 675
BplI	GAGNNNNNCTC	2 cut(s)	857, 889
BpmI	CTGGAG	2 cut(s)	600, 900
Bpu10I	CCTNAGC	1 cut(s)	874
Bpu1102I	GCTNAGC	1 cut(s)	753
BsaHI	GRCGYC	2 cut(s)	178, 851
BsaJI	CCNNGG	2 cut(s)	625, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	814, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 1092
Bse1I	ACTGG	1 cut(s)	406
Bse21I	CCTNAGG	2 cut(s)	573, 642
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	625, 808
BseGI	GGATG	4 cut(s)	268, 289, 522, 770
BseLI	CCNNNNNNNGG	2 cut(s)	578, 1092
BseMII	CTCAG	5 cut(s)	187, 633, 744, 855, 888
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	8 cut(s)	16, 19, 45, 48, 66, 69, 72, 974
BseXI	GCAGC	1 cut(s)	507
Bsh1236I	CGCG	2 cut(s)	124, 964
BshFI	GGCC	3 cut(s)	5, 624, 1023
BshNI	GGYRCC	1 cut(s)	850
BsiHKCI	CYCGRG	1 cut(s)	1025
BslFI	GGGAC	1 cut(s)	980
BslI	CCNNNNNNNGG	2 cut(s)	578, 1092
BsmFI	GGGAC	1 cut(s)	980
BsmI	GAATGC	2 cut(s)	424, 841
BsnI	GGCC	3 cut(s)	5, 624, 1023
BsoBI	CYCGRG	1 cut(s)	1025
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	169, 331, 1069
Bsp1720I	GCTNAGC	1 cut(s)	753
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	5 cut(s)	6, 13, 94, 947, 964
BspANI	GGCC	3 cut(s)	5, 624, 1023
BspCNI	CTCAG	5 cut(s)	186, 634, 745, 856, 887
BspFNI	CGCG	2 cut(s)	124, 964
BspLI	GGNNCC	2 cut(s)	366, 852
BspPI	GGATC	1 cut(s)	1064
BspT107I	GGYRCC	1 cut(s)	850
BspTI	CTTAAG	1 cut(s)	1016
BsrBI	CCGCTC	2 cut(s)	8, 15
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	625, 808
BssMI	GATC	3 cut(s)	169, 331, 1069
BssNI	GRCGYC	2 cut(s)	178, 851
BssT1I	CCWWGG	1 cut(s)	808
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	3 cut(s)	37, 45, 992
BstACI	GRCGYC	2 cut(s)	178, 851
BstAFI	CTTAAG	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	672, 979, 998
BstDEI	CTNAG	9 cut(s)	173, 413, 439, 573, 642, 753, 846, 864, 874
BstDSI	CCRYGG	1 cut(s)	808
BstF5I	GGATG	4 cut(s)	268, 289, 522, 770
BstFNI	CGCG	2 cut(s)	124, 964
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	2 cut(s)	126, 853
BstKTI	GATC	3 cut(s)	172, 334, 1072
BstMBI	GATC	3 cut(s)	169, 331, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	2 cut(s)	313, 1000
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	2 cut(s)	124, 964
BstV1I	GCAGC	1 cut(s)	507
BstV2I	GAAGAC	2 cut(s)	600, 675
BstXI	CCANNNNNNTGG	1 cut(s)	382
Bsu36I	CCTNAGG	2 cut(s)	573, 642
BsuRI	GGCC	3 cut(s)	5, 624, 1023
BtgI	CCRYGG	1 cut(s)	808
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	268, 289, 522, 770
Cac8I	GCNNGC	3 cut(s)	672, 979, 998
CfoI	GCGC	2 cut(s)	126, 853
Cfr13I	GGNCC	1 cut(s)	1021
CviAII	CATG	5 cut(s)	310, 551, 589, 809, 997
DdeI	CTNAG	9 cut(s)	173, 413, 439, 573, 642, 753, 846, 864, 874
DinI	GGCGCC	1 cut(s)	852
DpnI	GATC	3 cut(s)	171, 333, 1071
DpnII	GATC	3 cut(s)	169, 331, 1069
DraI	TTTAAA	1 cut(s)	711
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	37, 45, 992
EarI	CTCTTC	3 cut(s)	37, 45, 992
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	808
Eco147I	AGGCCT	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	483, 1095
Eco81I	CCTNAGG	2 cut(s)	573, 642
Eco88I	CYCGRG	1 cut(s)	1025
EcoO109I	RGGNCCY	1 cut(s)	1021
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	808
EcoT22I	ATGCAT	1 cut(s)	843
EcoT38I	GRGCYC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	852
EheI	GGCGCC	1 cut(s)	852
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	5 cut(s)	313, 554, 592, 812, 1000
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	1 cut(s)	980
FatI	CATG	5 cut(s)	309, 550, 588, 808, 996
FauI	CCCGC	1 cut(s)	957
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	3 cut(s)	6, 521, 947
FokI	GGATG	4 cut(s)	275, 296, 529, 757
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	6, 521, 947
FspBI	CTAG	3 cut(s)	111, 917, 974
GlaI	GCGC	2 cut(s)	125, 852
GluI	GCNGC	3 cut(s)	6, 521, 947
GsuI	CTGGAG	2 cut(s)	600, 900
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	3 cut(s)	5, 624, 1023
HhaI	GCGC	2 cut(s)	126, 853
Hin1I	GRCGYC	2 cut(s)	178, 851
Hin1II	CATG	5 cut(s)	313, 554, 592, 812, 1000
Hin6I	GCGC	2 cut(s)	124, 851
HinP1I	GCGC	2 cut(s)	124, 851
HindIII	AAGCTT	2 cut(s)	354, 695
HinfI	GANTC	5 cut(s)	117, 184, 432, 494, 607
HphI	GGTGA	4 cut(s)	561, 630, 641, 1091
Hpy166II	GTNNAC	1 cut(s)	815
Hpy188I	TCNGA	9 cut(s)	176, 183, 258, 331, 463, 490, 763, 865, 896
Hpy188III	TCNNGA	3 cut(s)	473, 611, 1073
Hpy8I	GTNNAC	1 cut(s)	815
Hpy99I	CGWCG	2 cut(s)	104, 170
HpyAV	CCTTC	3 cut(s)	28, 253, 1070
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	4 cut(s)	99, 178, 243, 704
HpyCH4V	TGCA	6 cut(s)	533, 554, 670, 821, 841, 996
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	9 cut(s)	173, 413, 439, 573, 642, 753, 846, 864, 874
HpySE526I	ACGT	4 cut(s)	99, 178, 243, 704
Hsp92I	GRCGYC	2 cut(s)	178, 851
Hsp92II	CATG	5 cut(s)	313, 554, 592, 812, 1000
HspAI	GCGC	2 cut(s)	124, 851
KasI	GGCGCC	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	169, 331, 1069
LmnI	GCTCC	3 cut(s)	20, 881, 1039
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	3 cut(s)	274, 507, 828
MaeI	CTAG	3 cut(s)	111, 917, 974
MaeII	ACGT	4 cut(s)	99, 178, 243, 704
MaeIII	GTNAC	2 cut(s)	636, 700
MalI	GATC	3 cut(s)	171, 333, 1071
MbiI	CCGCTC	2 cut(s)	8, 15
MboI	GATC	3 cut(s)	169, 331, 1069
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	5 cut(s)	214, 335, 545, 938, 1101
Mly113I	GGCGCC	1 cut(s)	851
MlyI	GAGTC	1 cut(s)	426
MmeI	TCCRAC	1 cut(s)	874
Mph1103I	ATGCAT	1 cut(s)	843
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	4 cut(s)	710, 783, 959, 1017
MspA1I	CMGCKG	1 cut(s)	878
MspCI	CTTAAG	1 cut(s)	1016
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	2 cut(s)	424, 841
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	124, 964
MwoI	GCNNNNNNNGC	1 cut(s)	315
NarI	GGCGCC	1 cut(s)	851
NcoI	CCATGG	1 cut(s)	808
NdeII	GATC	3 cut(s)	169, 331, 1069
NlaIII	CATG	5 cut(s)	313, 554, 592, 812, 1000
NlaIV	GGNNCC	2 cut(s)	366, 852
NmuCI	GTSAC	1 cut(s)	636
NsiI	ATGCAT	1 cut(s)	843
NspI	RCATGY	2 cut(s)	313, 1000
PaeI	GCATGC	1 cut(s)	1000
PaeR7I	CTCGAG	1 cut(s)	1025
PceI	AGGCCT	1 cut(s)	624
PctI	GAATGC	2 cut(s)	424, 841
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	117, 184, 494, 607
PkrI	GCNGC	3 cut(s)	7, 522, 948
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	366, 852
PspPI	GGNCC	1 cut(s)	1021
PspXI	VCTCGAGB	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	878
SaqAI	TTAA	4 cut(s)	710, 783, 959, 1017
SatI	GCNGC	3 cut(s)	6, 521, 947
Sau3AI	GATC	3 cut(s)	169, 331, 1069
Sau96I	GGNCC	1 cut(s)	1021
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	274, 507, 828
SfoI	GGCGCC	1 cut(s)	852
Sfr274I	CTCGAG	1 cut(s)	1025
SlaI	CTCGAG	1 cut(s)	1025
SmlI	CTYRAG	2 cut(s)	1016, 1025
SmoI	CTYRAG	2 cut(s)	1016, 1025
SpeI	ACTAGT	1 cut(s)	916
SphI	GCATGC	1 cut(s)	1000
Sse9I	AATT	5 cut(s)	214, 335, 545, 938, 1101
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	5 cut(s)	6, 13, 94, 947, 964
SspDI	GGCGCC	1 cut(s)	850
SspMI	CTAG	3 cut(s)	111, 917, 974
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	4 cut(s)	102, 181, 246, 707
TaqI	TCGA	4 cut(s)	165, 392, 1026, 1033
TasI	AATT	5 cut(s)	214, 335, 545, 938, 1101
TauI	GCSGC	2 cut(s)	8, 949
TfiI	GAWTC	4 cut(s)	117, 184, 494, 607
Tru1I	TTAA	4 cut(s)	710, 783, 959, 1017
Tru9I	TTAA	4 cut(s)	710, 783, 959, 1017
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	5 cut(s)	10, 305, 539, 653, 720
Vha464I	CTTAAG	1 cut(s)	1016
XapI	RAATTY	2 cut(s)	214, 545
XceI	RCATGY	2 cut(s)	313, 1000
XhoI	CTCGAG	1 cut(s)	1025
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	3 cut(s)	111, 917, 974
ZraI	GACGTC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.