Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Forward (+)

12326952 .. 12331317

Gene Structure 4366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGACCCTTCCCTCCTCCGTCTCCTCCTCTTCTCGTCCTCTAATTCCTCTCTGCCGCCCTCGTCCTATCTTCCGCTACGTCACCACAACCACTAACTCCAGAACTAGAAGATTCTCAGCTCTAGTTTTCGCTTCTTCCGCTTCTCCTTTTGATGATCTTAGGCGCCCAATCCGGCCCCCCAAGTCCAAGAAGTCAGTTCTCGCAGATTTGATACAAGAGATAGAACCCTTGAACGTGAGCCTTATTCAGAAAGATGTTCCACCTACTACCGTGGATGCCATGAAAAGGACCATTTCAGGCATGTTGGGCTTACTTCCATCTGATCAATTTCAAGTTCTTATTGAGGCCTTATGGAAACCCCTCTCTAAGTTGTTGGTTTCTTCAATGATGACTGGGTATACTCTAAGGAATGCCGAATATAGGCTTTGTCTAGAACGGAATTTTGATCTATGTGAAGACAAGCTTGAAAAACAAACACCAGAAAATGGTAAAGTTGATTTGCAAGGGATGTTGCTTGAAAGTGCAAATATTATCAAATTTCCTGCAAAAGATAAGTTTTCTTCCAATGCTGGAGAAGTTGCTGAAGACTCATTGGAGAATATTGATATTCAAGGCCTTGGTGAAGTGTCTCCTGAGGCTCAACAATATATTCTTCAGTTGCAGGCTCATTTATCTTCTGCCAAAAAGGAACTCCATGAAGTCAAGAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGGGAAGAAAAGAATGATTTGCTGGACTATTTGAGATCGTTACAGCCAGAAGAGGTAGCTGAGCTATCAGAACCAACGTCCCCTGAACTGAAAGAAATAATCCACTCTGTTATCCATGGTCTACTTGCAACCCTTTCTCCAAAGATGCATTCTAAGGCACCTCCTTCATCCGAGAGTGCCTCAGCTGGAGTAATAAATGGTGAGAGTGAAGATTGTGCTGAACTTGTTGAAAACACTTCACTTCATTTTCAGCCCCTTATTTCATTAACGCGGGACTACCTGGCGCGTCTCCTCTTCTGGTGCATGCTGTTAGGACACTACCTCAAGGGTCTAGAGTATCGGATGGAGCTGACGGAGCTTCTATCCCTGACAAGCAATGCTGAAAGCGATACCCCTGATGATGATCAAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

387

Amino Acids

43.0

Weight (kDa)

5.22

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	165, 901
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	2 cut(s)	401, 865
AccII	CGCG	2 cut(s)	1015, 1030
AciI	CCGC	4 cut(s)	58, 76, 141, 1015
AcsI	RAATTY	2 cut(s)	442, 539
AcuI	CTGAAG	2 cut(s)	606, 641
AcyI	GRCGYC	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	288, 423, 488
AgsI	TTSAA	8 cut(s)	235, 335, 387, 470, 521, 614, 728, 974
AjnI	CCWGG	1 cut(s)	1023
AjuI	GAANNNNNNNTTGG	2 cut(s)	877, 909
AluBI	AGCT	7 cut(s)	122, 466, 803, 808, 929, 1093, 1102
AluI	AGCT	7 cut(s)	122, 466, 803, 808, 929, 1093, 1102
Alw26I	GTCTC	3 cut(s)	28, 636, 1037
AoxI	GGCC	3 cut(s)	176, 348, 616
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	2 cut(s)	442, 539
AspLEI	GCGC	2 cut(s)	168, 1030
AspS9I	GGNCC	2 cut(s)	177, 291
AsuHPI	GGTGA	3 cut(s)	76, 635, 956
AvaII	GGWCC	1 cut(s)	291
AxyI	CCTNAGG	1 cut(s)	636
BanI	GGYRCC	2 cut(s)	165, 901
BbsI	GAAGAC	2 cut(s)	465, 594
BbvCI	CCTCAGC	1 cut(s)	925
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	2 cut(s)	328, 1081
BciT130I	CCWGG	1 cut(s)	1025
BclI	TGATCA	2 cut(s)	325, 1147
BcoDI	GTCTC	3 cut(s)	28, 636, 1037
BfaI	CTAG	4 cut(s)	108, 125, 434, 1076
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	2 cut(s)	58, 720
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	2 cut(s)	59, 721
Bme1390I	CCNGG	1 cut(s)	1025
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	2 cut(s)	177, 291
BmiI	GGNNCC	3 cut(s)	167, 179, 903
BmrFI	CCNGG	1 cut(s)	1025
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	268, 879
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	2 cut(s)	465, 594
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	3 cut(s)	85, 594, 951
Bpu10I	CCTNAGC	1 cut(s)	925
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	1052
BsaBI	GATNNNNATC	1 cut(s)	1146
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	273, 619, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 423, 488
Bse1I	ACTGG	1 cut(s)	400
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	1126
Bse8I	GATNNNNATC	1 cut(s)	1146
BseBI	CCWGG	1 cut(s)	1025
BseDI	CCNNGG	3 cut(s)	273, 619, 859
BseGI	GGATG	4 cut(s)	283, 516, 911, 1092
BseJI	GATNNNNATC	1 cut(s)	1146
BseLI	CCNNNNNNNGG	3 cut(s)	288, 423, 488
BseMI	GCAATG	1 cut(s)	1126
BseMII	CTCAG	4 cut(s)	132, 627, 795, 939
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	4 cut(s)	7, 16, 19, 1025
BseXI	GCAGC	1 cut(s)	706
Bsh1236I	CGCG	2 cut(s)	1015, 1030
BshFI	GGCC	3 cut(s)	178, 350, 618
BshNI	GGYRCC	2 cut(s)	165, 901
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	2 cut(s)	808, 1031
BslI	CCNNNNNNNGG	3 cut(s)	288, 423, 488
BsmAI	GTCTC	3 cut(s)	28, 636, 1037
BsmBI	CGTCTC	2 cut(s)	28, 1037
BsmFI	GGGAC	2 cut(s)	808, 1031
BsmI	GAATGC	2 cut(s)	418, 892
BsnI	GGCC	3 cut(s)	178, 350, 618
Bsp143I	GATC	5 cut(s)	157, 325, 448, 779, 1147
Bsp1720I	GCTNAGC	1 cut(s)	804
Bsp19I	CCATGG	1 cut(s)	859
BspACI	CCGC	4 cut(s)	58, 76, 141, 1015
BspANI	GGCC	3 cut(s)	178, 350, 618
BspCNI	CTCAG	4 cut(s)	131, 628, 796, 938
BspFNI	CGCG	2 cut(s)	1015, 1030
BspLI	GGNNCC	3 cut(s)	167, 179, 903
BspQI	GCTCTTC	1 cut(s)	729
BspT107I	GGYRCC	2 cut(s)	165, 901
BsrDI	GCAATG	1 cut(s)	1126
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	273, 619, 859
BssMI	GATC	5 cut(s)	157, 325, 448, 779, 1147
BssNAI	GTATAC	1 cut(s)	402
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	619, 859
Bst1107I	GTATAC	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	1025
Bst4CI	ACNGT	2 cut(s)	274, 738
Bst6I	CTCTTC	4 cut(s)	37, 729, 789, 1043
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	666, 1049
BstDEI	CTNAG	8 cut(s)	118, 161, 369, 407, 636, 804, 897, 925
BstDSI	CCRYGG	2 cut(s)	273, 859
BstF5I	GGATG	4 cut(s)	283, 516, 911, 1092
BstFNI	CGCG	2 cut(s)	1015, 1030
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	168, 1030
BstKTI	GATC	5 cut(s)	160, 328, 451, 782, 1150
BstMAI	GTCTC	3 cut(s)	28, 636, 1037
BstMBI	GATC	5 cut(s)	157, 325, 448, 779, 1147
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 309, 1099
BstNI	CCWGG	1 cut(s)	1025
BstNSI	RCATGY	2 cut(s)	307, 1051
BstSCI	CCNGG	1 cut(s)	1023
BstUI	CGCG	2 cut(s)	1015, 1030
BstV1I	GCAGC	1 cut(s)	706
BstV2I	GAAGAC	2 cut(s)	465, 594
BstZ17I	GTATAC	1 cut(s)	402
Bsu36I	CCTNAGG	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	178, 350, 618
BtgI	CCRYGG	2 cut(s)	273, 859
BtsCI	GGATG	4 cut(s)	283, 516, 911, 1092
Cac8I	GCNNGC	2 cut(s)	666, 1049
CfoI	GCGC	2 cut(s)	168, 1030
Cfr13I	GGNCC	2 cut(s)	177, 291
CseI	GACGC	1 cut(s)	1019
CviAII	CATG	5 cut(s)	283, 304, 698, 860, 1048
DdeI	CTNAG	8 cut(s)	118, 161, 369, 407, 636, 804, 897, 925
DinI	GGCGCC	1 cut(s)	167
DpnI	GATC	5 cut(s)	159, 327, 450, 781, 1149
DpnII	GATC	5 cut(s)	157, 325, 448, 779, 1147
Eam1104I	CTCTTC	4 cut(s)	37, 729, 789, 1043
EarI	CTCTTC	4 cut(s)	37, 729, 789, 1043
Eco130I	CCWWGG	2 cut(s)	619, 859
Eco147I	AGGCCT	2 cut(s)	350, 618
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	606, 641
Eco81I	CCTNAGG	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	1023
EcoT14I	CCWWGG	2 cut(s)	619, 859
EcoT22I	ATGCAT	1 cut(s)	894
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	619, 859
Esp3I	CGTCTC	2 cut(s)	28, 1037
FaeI	CATG	5 cut(s)	286, 307, 701, 863, 1051
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	2 cut(s)	808, 1031
FatI	CATG	5 cut(s)	282, 303, 697, 859, 1047
FauI	CCCGC	1 cut(s)	1008
FbaI	TGATCA	2 cut(s)	325, 1147
FblI	GTMKAC	2 cut(s)	401, 865
Fnu4HI	GCNGC	2 cut(s)	58, 720
FokI	GGATG	4 cut(s)	290, 523, 898, 1099
Fsp4HI	GCNGC	2 cut(s)	58, 720
FspBI	CTAG	4 cut(s)	108, 125, 434, 1076
GlaI	GCGC	2 cut(s)	167, 1029
GluI	GCNGC	2 cut(s)	58, 720
GsuI	CTGGAG	3 cut(s)	85, 594, 951
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	178, 350, 618
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	2 cut(s)	168, 1030
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	5 cut(s)	286, 307, 701, 863, 1051
Hin6I	GCGC	2 cut(s)	166, 1028
HinP1I	GCGC	2 cut(s)	166, 1028
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	2 cut(s)	114, 590
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	3 cut(s)	76, 635, 956
Hpy166II	GTNNAC	2 cut(s)	402, 866
Hpy188I	TCNGA	5 cut(s)	252, 325, 814, 916, 1086
Hpy188III	TCNNGA	5 cut(s)	102, 434, 635, 706, 1076
Hpy8I	GTNNAC	2 cut(s)	402, 866
HpyAV	CCTTC	2 cut(s)	20, 918
HpyCH4III	ACNGT	2 cut(s)	274, 738
HpyCH4IV	ACGT	3 cut(s)	81, 237, 821
HpyCH4V	TGCA	8 cut(s)	505, 527, 548, 664, 733, 872, 892, 1047
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 309, 1099
HpyF3I	CTNAG	8 cut(s)	118, 161, 369, 407, 636, 804, 897, 925
HpySE526I	ACGT	3 cut(s)	81, 237, 821
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	5 cut(s)	286, 307, 701, 863, 1051
HspAI	GCGC	2 cut(s)	166, 1028
KasI	GGCGCC	1 cut(s)	165
Ksp22I	TGATCA	2 cut(s)	325, 1147
Kzo9I	GATC	5 cut(s)	157, 325, 448, 779, 1147
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	2 cut(s)	1090, 1099
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	2 cut(s)	268, 879
MaeI	CTAG	4 cut(s)	108, 125, 434, 1076
MaeII	ACGT	3 cut(s)	81, 237, 821
MaeIII	GTNAC	2 cut(s)	82, 783
MalI	GATC	5 cut(s)	159, 327, 450, 781, 1149
MboI	GATC	5 cut(s)	157, 325, 448, 779, 1147
MluCI	AATT	4 cut(s)	45, 329, 442, 539
Mly113I	GGCGCC	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	584
Mph1103I	ATGCAT	1 cut(s)	894
MseI	TTAA	1 cut(s)	1010
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	1025
Mva1269I	GAATGC	2 cut(s)	418, 892
MvaI	CCWGG	1 cut(s)	1025
MvnI	CGCG	2 cut(s)	1015, 1030
MwoI	GCNNNNNNNGC	3 cut(s)	140, 309, 1099
NarI	GGCGCC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	5 cut(s)	157, 325, 448, 779, 1147
NlaIII	CATG	5 cut(s)	286, 307, 701, 863, 1051
NlaIV	GGNNCC	3 cut(s)	167, 179, 903
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	894
NspI	RCATGY	2 cut(s)	307, 1051
PaeI	GCATGC	1 cut(s)	1051
PceI	AGGCCT	2 cut(s)	350, 618
PciSI	GCTCTTC	1 cut(s)	729
PctI	GAATGC	2 cut(s)	418, 892
PfeI	GAWTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	59, 721
PleI	GAGTC	1 cut(s)	584
PluTI	GGCGCC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	1023
PspGI	CCWGG	1 cut(s)	1023
PspN4I	GGNNCC	3 cut(s)	167, 179, 903
PspPI	GGNCC	2 cut(s)	177, 291
PvuII	CAGCTG	1 cut(s)	929
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	1 cut(s)	1010
SatI	GCNGC	2 cut(s)	58, 720
Sau3AI	GATC	5 cut(s)	157, 325, 448, 779, 1147
Sau96I	GGNCC	2 cut(s)	177, 291
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	1025
SfaNI	GCATC	2 cut(s)	268, 879
SfoI	GGCGCC	1 cut(s)	167
SinI	GGWCC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	1051
Sse9I	AATT	4 cut(s)	45, 329, 442, 539
SseBI	AGGCCT	2 cut(s)	350, 618
SsiI	CCGC	4 cut(s)	58, 76, 141, 1015
SspDI	GGCGCC	1 cut(s)	165
SspI	AATATT	2 cut(s)	532, 604
SspMI	CTAG	4 cut(s)	108, 125, 434, 1076
StuI	AGGCCT	2 cut(s)	350, 618
StyD4I	CCNGG	1 cut(s)	1023
StyI	CCWWGG	2 cut(s)	619, 859
TaaI	ACNGT	2 cut(s)	274, 738
TaiI	ACGT	3 cut(s)	84, 240, 824
TasI	AATT	4 cut(s)	45, 329, 442, 539
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	1010
Tru9I	TTAA	1 cut(s)	1010
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	5 cut(s)	299, 714, 900, 977, 996
TspGWI	ACGGA	3 cut(s)	10, 454, 1112
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	2 cut(s)	442, 539
XbaI	TCTAGA	2 cut(s)	433, 1075
XceI	RCATGY	2 cut(s)	307, 1051
XmiI	GTMKAC	2 cut(s)	401, 865
XspI	CTAG	4 cut(s)	108, 125, 434, 1076
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.