Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Reverse (-)

9729793 .. 9751027

Gene Structure 21235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG061600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGCTTCGTTTTCTCACAGTCTCATTTGGTTAGGCCACACTATAAGCTTTGTCAGCTTAGCGAATTGAAATCGGTTCTCTCAAATTTGATACAAGAGATAGAGCCCTTGAACGTGAGCCTCATTCAGAAGGATGTTCCACCTATGACTGTGGATGCTATGAAAAGAACTATTTCAGGCATGTTGGGCTTACTTCCATCTGATCAATTTCACGTTGTTATTGAGGCTTTATGGGAACCACTCTCCAAGTTGTTGGTTTCTTCGATGATGACTGGATATACTCTAAGGAATGCTGAATATAGACTTTGCTTAGAACGAAACTTTGATATATCTGAAGAAAATCTTGAAAAGCAAACATCAGAAGATTCTAACGTTGATTTACAAGGGATGCTGCTTGAAAGTGCAAATATAATCAAATTTCATGCAAAAGACGAGTTTTCACCTAAGGCTGGAGAAGTGATGGAAGACCCATTGGAGAATCTTGATATTCAAGGCCTCGGTGAAGTGTCACCTGAGGTTCAACAATATATTCTTCATTTGCAGGCTCATTTGTCTTCTGCCAAAAAGGAACTCCATGATGTCAAAAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGGGAAGAAAAGAATGATTTACTGGACTATTTAAGATCACTACAGCCCGAAAAGGTAGCTGAGCTATCAGAACCAACATCCCCTGAACTTAAAGAAATAATCCACTCTGTTGTCCATGGTCTACTTGCAACCCTTTCTCCAAAGATGCATTCTAAGGCGCCTCCTTTATCTGAGAATACCTCAGCTGGAGCAATAAATGTCGGAAGTGAAGATTGTGCTGAACTAGTTGAAAACACATCACTTCAATTTCAGCCGCTTATTCTATTAACGCGGGACTACCTAGCACGCCTCCTCTTCTGGTGCATGCTGTTAGGACACTACCTTAAGGGCCTCGAGTATCGAATGGAGCTAACCGAGCTTCTTGCCCTAACAAGCAATCCTGAAGGTGATACCCCTGATGGGCAACAAATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

345

Amino Acids

38.7

Weight (kDa)

4.9

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	27 - 108	9.6e-26	Protein of unknown function (DUF760)
DUF760	PF05542	213 - 328	1.7e-23	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	742
AccII	CGCG	1 cut(s)	892
AciI	CCGC	2 cut(s)	875, 892
AclI	AACGTT	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	85, 416
AcuI	CTGAAG	2 cut(s)	354, 1023
AcyI	GRCGYC	1 cut(s)	779
AfiI	CCNNNNNNNGG	2 cut(s)	449, 1020
AflII	CTTAAG	1 cut(s)	944
AgsI	TTSAA	9 cut(s)	70, 112, 347, 398, 491, 521, 605, 851, 866
AhlI	ACTAGT	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	2 cut(s)	754, 786
AluBI	AGCT	7 cut(s)	49, 58, 680, 685, 806, 970, 979
AluI	AGCT	7 cut(s)	49, 58, 680, 685, 806, 970, 979
Alw26I	GTCTC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	953
AoxI	GGCC	3 cut(s)	35, 493, 949
ApeKI	GCWGC	2 cut(s)	391, 596
ApoI	RAATTY	2 cut(s)	85, 416
Asp700I	GAANNNNTTC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	4 cut(s)	432, 501, 512, 1019
AvaI	CYCGRG	1 cut(s)	953
AxyI	CCTNAGG	2 cut(s)	444, 513
BanI	GGYRCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	2 cut(s)	471, 546
BbvCI	CCTCAGC	1 cut(s)	802
BbvI	GCAGC	2 cut(s)	378, 583
BccI	CCATC	3 cut(s)	205, 454, 1013
BcgI	CGANNNNNNTGC	2 cut(s)	965, 999
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	27
BcuI	ACTAGT	1 cut(s)	844
BfaI	CTAG	2 cut(s)	845, 902
BfmI	CTRYAG	1 cut(s)	662
BfoI	RGCGCY	1 cut(s)	782
BfrI	CTTAAG	1 cut(s)	944
BisI	GCNGC	3 cut(s)	392, 597, 875
BlpI	GCTNAGC	2 cut(s)	59, 681
BlsI	GCNGC	3 cut(s)	393, 598, 876
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	2 cut(s)	237, 780
BmsI	GCATC	3 cut(s)	145, 378, 756
BpiI	GAAGAC	2 cut(s)	471, 546
BplI	GAGNNNNNCTC	2 cut(s)	785, 817
BpmI	CTGGAG	2 cut(s)	471, 828
Bpu10I	CCTNAGC	1 cut(s)	802
Bpu1102I	GCTNAGC	2 cut(s)	59, 681
BsaHI	GRCGYC	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	496, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	742, 772
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 1020
Bse1I	ACTGG	2 cut(s)	277, 648
Bse21I	CCTNAGG	2 cut(s)	444, 513
BseDI	CCNNGG	2 cut(s)	496, 736
BseGI	GGATG	4 cut(s)	139, 160, 393, 698
BseLI	CCNNNNNNNGG	2 cut(s)	449, 1020
BseMII	CTCAG	4 cut(s)	504, 672, 783, 816
BseNI	ACTGG	2 cut(s)	277, 648
BseRI	GAGGAG	1 cut(s)	902
BseXI	GCAGC	2 cut(s)	378, 583
Bsh1236I	CGCG	1 cut(s)	892
BshFI	GGCC	3 cut(s)	37, 495, 951
BshNI	GGYRCC	1 cut(s)	778
BsiHKCI	CYCGRG	1 cut(s)	953
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	449, 1020
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	908
BsmI	GAATGC	2 cut(s)	295, 769
BsnI	GGCC	3 cut(s)	37, 495, 951
BsoBI	CYCGRG	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	202, 656
Bsp1720I	GCTNAGC	2 cut(s)	59, 681
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	2 cut(s)	875, 892
BspANI	GGCC	3 cut(s)	37, 495, 951
BspCNI	CTCAG	4 cut(s)	505, 673, 784, 815
BspFNI	CGCG	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	237, 780
BspQI	GCTCTTC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	778
BspTI	CTTAAG	1 cut(s)	944
BsrI	ACTGG	2 cut(s)	277, 648
BssECI	CCNNGG	2 cut(s)	496, 736
BssMI	GATC	2 cut(s)	202, 656
BssNI	GRCGYC	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	736
Bst4CI	ACNGT	3 cut(s)	21, 151, 615
Bst6I	CTCTTC	2 cut(s)	606, 920
BstACI	GRCGYC	1 cut(s)	779
BstAFI	CTTAAG	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	543, 907, 926
BstDEI	CTNAG	9 cut(s)	59, 284, 310, 444, 513, 681, 774, 792, 802
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	4 cut(s)	139, 160, 393, 698
BstFNI	CGCG	1 cut(s)	892
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	2 cut(s)	205, 659
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	202, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 186, 976
BstNSI	RCATGY	2 cut(s)	184, 928
BstSFI	CTRYAG	1 cut(s)	662
BstUI	CGCG	1 cut(s)	892
BstV1I	GCAGC	2 cut(s)	378, 583
BstV2I	GAAGAC	2 cut(s)	471, 546
BstXI	CCANNNNNNTGG	1 cut(s)	253
Bsu36I	CCTNAGG	2 cut(s)	444, 513
BsuRI	GGCC	3 cut(s)	37, 495, 951
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	4 cut(s)	139, 160, 393, 698
Cac8I	GCNNGC	3 cut(s)	543, 907, 926
CfoI	GCGC	1 cut(s)	781
Cfr13I	GGNCC	1 cut(s)	949
CviAII	CATG	5 cut(s)	181, 422, 575, 737, 925
DdeI	CTNAG	9 cut(s)	59, 284, 310, 444, 513, 681, 774, 792, 802
DinI	GGCGCC	1 cut(s)	780
DpnI	GATC	2 cut(s)	204, 658
DpnII	GATC	2 cut(s)	202, 656
Eam1104I	CTCTTC	2 cut(s)	606, 920
EarI	CTCTTC	2 cut(s)	606, 920
Eco130I	CCWWGG	1 cut(s)	736
Eco147I	AGGCCT	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	108
Eco57I	CTGAAG	2 cut(s)	354, 1023
Eco81I	CCTNAGG	2 cut(s)	444, 513
Eco88I	CYCGRG	1 cut(s)	953
EcoO109I	RGGNCCY	1 cut(s)	949
EcoT14I	CCWWGG	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	771
EcoT38I	GRGCYC	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	780
EheI	GGCGCC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	736
FaeI	CATG	5 cut(s)	184, 425, 578, 740, 928
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	5 cut(s)	180, 421, 574, 736, 924
FauI	CCCGC	1 cut(s)	885
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	392, 597, 875
FokI	GGATG	4 cut(s)	146, 167, 400, 685
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	392, 597, 875
FspBI	CTAG	2 cut(s)	845, 902
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	3 cut(s)	392, 597, 875
GsuI	CTGGAG	2 cut(s)	471, 828
HaeII	RGCGCY	1 cut(s)	782
HaeIII	GGCC	3 cut(s)	37, 495, 951
HhaI	GCGC	1 cut(s)	781
Hin1I	GRCGYC	1 cut(s)	779
Hin1II	CATG	5 cut(s)	184, 425, 578, 740, 928
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	365, 478
HphI	GGTGA	4 cut(s)	432, 501, 512, 1019
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	7 cut(s)	129, 202, 334, 361, 691, 793, 824
Hpy188III	TCNNGA	3 cut(s)	344, 482, 1001
Hpy8I	GTNNAC	1 cut(s)	743
HpyAV	CCTTC	2 cut(s)	124, 998
HpyCH4III	ACNGT	3 cut(s)	21, 151, 615
HpyCH4IV	ACGT	3 cut(s)	114, 213, 372
HpyCH4V	TGCA	7 cut(s)	404, 425, 541, 610, 749, 769, 924
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 186, 976
HpyF3I	CTNAG	9 cut(s)	59, 284, 310, 444, 513, 681, 774, 792, 802
HpySE526I	ACGT	3 cut(s)	114, 213, 372
Hsp92I	GRCGYC	1 cut(s)	779
Hsp92II	CATG	5 cut(s)	184, 425, 578, 740, 928
HspAI	GCGC	1 cut(s)	779
KasI	GGCGCC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 656
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	2 cut(s)	809, 967
Lsp1109I	GCAGC	2 cut(s)	378, 583
LweI	GCATC	3 cut(s)	145, 378, 756
MaeI	CTAG	2 cut(s)	845, 902
MaeII	ACGT	3 cut(s)	114, 213, 372
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	204, 658
MboI	GATC	2 cut(s)	202, 656
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	6 cut(s)	65, 85, 206, 416, 866, 1029
Mly113I	GGCGCC	1 cut(s)	779
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	9 cut(s)	131, 217, 506, 508, 792, 811, 920, 923, 962
Mph1103I	ATGCAT	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	4 cut(s)	653, 711, 887, 945
MspA1I	CMGCKG	1 cut(s)	806
MspCI	CTTAAG	1 cut(s)	944
Mva1269I	GAATGC	2 cut(s)	295, 769
MvnI	CGCG	1 cut(s)	892
MwoI	GCNNNNNNNGC	3 cut(s)	55, 186, 976
NarI	GGCGCC	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	736
NdeII	GATC	2 cut(s)	202, 656
NlaIII	CATG	5 cut(s)	184, 425, 578, 740, 928
NlaIV	GGNNCC	2 cut(s)	237, 780
NmuCI	GTSAC	1 cut(s)	507
NsiI	ATGCAT	1 cut(s)	771
NspI	RCATGY	2 cut(s)	184, 928
PaeI	GCATGC	1 cut(s)	928
PaeR7I	CTCGAG	1 cut(s)	953
PceI	AGGCCT	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	2 cut(s)	295, 769
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	365, 478
PkrI	GCNGC	3 cut(s)	393, 598, 876
PluTI	GGCGCC	1 cut(s)	782
Psp1406I	AACGTT	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	237, 780
PspPI	GGNCC	1 cut(s)	949
PspXI	VCTCGAGB	1 cut(s)	953
PvuII	CAGCTG	1 cut(s)	806
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	4 cut(s)	653, 711, 887, 945
SatI	GCNGC	3 cut(s)	392, 597, 875
Sau3AI	GATC	2 cut(s)	202, 656
Sau96I	GGNCC	1 cut(s)	949
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	3 cut(s)	145, 378, 756
SfcI	CTRYAG	1 cut(s)	662
SfoI	GGCGCC	1 cut(s)	780
Sfr274I	CTCGAG	1 cut(s)	953
SlaI	CTCGAG	1 cut(s)	953
SmlI	CTYRAG	2 cut(s)	944, 953
SmoI	CTYRAG	2 cut(s)	944, 953
SpeI	ACTAGT	1 cut(s)	844
SphI	GCATGC	1 cut(s)	928
Sse9I	AATT	6 cut(s)	65, 85, 206, 416, 866, 1029
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	875, 892
SspDI	GGCGCC	1 cut(s)	778
SspMI	CTAG	2 cut(s)	845, 902
StuI	AGGCCT	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	21, 151, 615
TaiI	ACGT	3 cut(s)	117, 216, 375
TaqI	TCGA	3 cut(s)	263, 954, 961
TasI	AATT	6 cut(s)	65, 85, 206, 416, 866, 1029
TauI	GCSGC	1 cut(s)	877
TfiI	GAWTC	2 cut(s)	365, 478
Tru1I	TTAA	4 cut(s)	653, 711, 887, 945
Tru9I	TTAA	4 cut(s)	653, 711, 887, 945
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	2 cut(s)	391, 596
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	3 cut(s)	176, 410, 524
Vha464I	CTTAAG	1 cut(s)	944
XapI	RAATTY	2 cut(s)	85, 416
XceI	RCATGY	2 cut(s)	184, 928
XhoI	CTCGAG	1 cut(s)	953
XmiI	GTMKAC	1 cut(s)	742
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	2 cut(s)	845, 902
Zsp2I	ATGCAT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.