Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007138.1

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Forward (+)

16044 .. 19711

Gene Structure 3668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007138.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggccactctccgctccttcatctcctcctcttcttctcttcatctactccctcctcccctgcttcgcttttctcctcctcctcctatcttccgccacgtcgccgcccctagaggattctcgcgcctggttctcgcttcttcggcttctcctttcgatgatctcagacgtccgattcaatcctccaagaaatcggttctctcaaatttgatacaagagatagagcccttgaacgtgagcctcattcagaaggatgttccacctatgactgtggatgctatgaaaagaactatttcaggcatgttgggcttacttccatctgatcaatttcacgttgttattgaggctttatgggaaccactctccaagttgttggctcatttgtcttctgccaaaaaggaactccacgatgtcaagaggaaaagtgccgctcttcaaatgcaacagtttgttggggaagaaaagaatgatttactggactatttaagatcactacagcccggaaaggtagctgagctatcagaaccaacatcccctgaacttaaagaaataatccactctgttgtccatggtctacttgcaaccctttctccaaagatgcattctaaggcgcctcctttatctgagaatacctcagctggagcaataaatgtcggaagtgaagattgtactgaactagttgaaaacacatcacttcaatttcagccgcttattctattaacgcgggactacctagcacgcctcctcttctggtgcatgctgttaggacactaccttaagggcctcgagtatcgaatggagctaaccgaacttcttgccctaacaagcaatcctgaaggtgatacccctgatgggcaacaaattgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

289

Amino Acids

31.94

Weight (kDa)

6.31

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	610
AccBSI	CCGCTC	2 cut(s)	15, 431
AccI	GTMKAC	1 cut(s)	574
AccII	CGCG	2 cut(s)	124, 724
AciI	CCGC	6 cut(s)	13, 94, 105, 429, 707, 724
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	855
AcyI	GRCGYC	2 cut(s)	169, 611
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	1 cut(s)	852
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	179, 232, 437, 683, 698
AhlI	ACTAGT	1 cut(s)	676
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AluBI	AGCT	4 cut(s)	512, 517, 638, 802
AluI	AGCT	4 cut(s)	512, 517, 638, 802
Ama87I	CYCGRG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	3, 781
ApoI	RAATTY	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	126, 613
AspS9I	GGNCC	1 cut(s)	781
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	851
AvaI	CYCGRG	1 cut(s)	785
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	634
BccI	CCATC	2 cut(s)	325, 845
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	501
BcuI	ACTAGT	1 cut(s)	676
BfaI	CTAG	3 cut(s)	111, 677, 734
BfmI	CTRYAG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	614
BfrI	CTTAAG	1 cut(s)	776
BisI	GCNGC	3 cut(s)	105, 429, 707
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	3 cut(s)	106, 430, 708
Bme1390I	CCNGG	2 cut(s)	128, 501
BmeT110I	CYCGRG	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	781
BmiI	GGNNCC	2 cut(s)	357, 612
BmrFI	CCNGG	2 cut(s)	128, 501
BmsI	GCATC	2 cut(s)	265, 588
BpiI	GAAGAC	1 cut(s)	378
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	2 cut(s)	169, 611
BsaJI	CCNNGG	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	1 cut(s)	852
Bse1I	ACTGG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	3 cut(s)	259, 280, 530
BseLI	CCNNNNNNNGG	1 cut(s)	852
BseMII	CTCAG	4 cut(s)	178, 504, 615, 648
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	7 cut(s)	16, 19, 45, 66, 69, 72, 734
Bsh1236I	CGCG	2 cut(s)	124, 724
BshFI	GGCC	2 cut(s)	5, 783
BshNI	GGYRCC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	1 cut(s)	852
BsmFI	GGGAC	1 cut(s)	740
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	5, 783
BsoBI	CYCGRG	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	160, 322, 488
Bsp1720I	GCTNAGC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	6 cut(s)	13, 94, 105, 429, 707, 724
BspANI	GGCC	2 cut(s)	5, 783
BspCNI	CTCAG	4 cut(s)	177, 505, 616, 647
BspFNI	CGCG	2 cut(s)	124, 724
BspLI	GGNNCC	2 cut(s)	357, 612
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	610
BspTI	CTTAAG	1 cut(s)	776
BsrBI	CCGCTC	2 cut(s)	15, 431
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	3 cut(s)	160, 322, 488
BssNI	GRCGYC	2 cut(s)	169, 611
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	271, 447
Bst6I	CTCTTC	4 cut(s)	37, 45, 438, 752
BstACI	GRCGYC	2 cut(s)	169, 611
BstAFI	CTTAAG	1 cut(s)	776
BstC8I	GCNNGC	2 cut(s)	739, 758
BstDEI	CTNAG	5 cut(s)	164, 513, 606, 624, 634
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	259, 280, 530
BstFNI	CGCG	2 cut(s)	124, 724
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	2 cut(s)	126, 613
BstKTI	GATC	3 cut(s)	163, 325, 491
BstMBI	GATC	3 cut(s)	160, 322, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 306
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	2 cut(s)	304, 760
BstSCI	CCNGG	2 cut(s)	126, 499
BstSFI	CTRYAG	1 cut(s)	494
BstUI	CGCG	2 cut(s)	124, 724
BstV2I	GAAGAC	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	5, 783
BtgI	CCRYGG	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	259, 280, 530
Cac8I	GCNNGC	2 cut(s)	739, 758
CfoI	GCGC	2 cut(s)	126, 613
Cfr13I	GGNCC	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	3 cut(s)	301, 569, 757
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	5 cut(s)	164, 513, 606, 624, 634
DinI	GGCGCC	1 cut(s)	612
DpnI	GATC	3 cut(s)	162, 324, 490
DpnII	GATC	3 cut(s)	160, 322, 488
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	37, 45, 438, 752
EarI	CTCTTC	4 cut(s)	37, 45, 438, 752
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	785
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	612
EheI	GGCGCC	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	3 cut(s)	304, 572, 760
FaiI	YATR	6 cut(s)	266, 281, 302, 352, 570, 758
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	3 cut(s)	300, 568, 756
FauI	CCCGC	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	105, 429, 707
FokI	GGATG	3 cut(s)	266, 287, 517
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	3 cut(s)	105, 429, 707
FspBI	CTAG	3 cut(s)	111, 677, 734
GlaI	GCGC	2 cut(s)	125, 612
GluI	GCNGC	3 cut(s)	105, 429, 707
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	2 cut(s)	5, 783
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	2 cut(s)	126, 613
Hin1I	GRCGYC	2 cut(s)	169, 611
Hin1II	CATG	3 cut(s)	304, 572, 760
Hin6I	GCGC	2 cut(s)	124, 611
HinP1I	GCGC	2 cut(s)	124, 611
HinfI	GANTC	2 cut(s)	117, 175
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	851
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	7 cut(s)	167, 174, 249, 322, 523, 625, 656
Hpy188III	TCNNGA	2 cut(s)	415, 833
Hpy8I	GTNNAC	1 cut(s)	575
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	28, 244, 830
HpyCH4III	ACNGT	2 cut(s)	271, 447
HpyCH4IV	ACGT	4 cut(s)	99, 169, 234, 333
HpyCH4V	TGCA	4 cut(s)	442, 581, 601, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 306
HpyF3I	CTNAG	5 cut(s)	164, 513, 606, 624, 634
HpySE526I	ACGT	4 cut(s)	99, 169, 234, 333
Hsp92I	GRCGYC	2 cut(s)	169, 611
Hsp92II	CATG	3 cut(s)	304, 572, 760
HspAI	GCGC	2 cut(s)	124, 611
KasI	GGCGCC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	160, 322, 488
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	3 cut(s)	20, 641, 799
LweI	GCATC	2 cut(s)	265, 588
MaeI	CTAG	3 cut(s)	111, 677, 734
MaeII	ACGT	4 cut(s)	99, 169, 234, 333
MalI	GATC	3 cut(s)	162, 324, 490
MbiI	CCGCTC	2 cut(s)	15, 431
MboI	GATC	3 cut(s)	160, 322, 488
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	205, 326, 698, 861
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	634
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	485, 543, 719, 777
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	128, 501
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	124, 724
MwoI	GCNNNNNNNGC	2 cut(s)	143, 306
NarI	GGCGCC	1 cut(s)	611
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	160, 322, 488
NlaIII	CATG	3 cut(s)	304, 572, 760
NlaIV	GGNNCC	2 cut(s)	357, 612
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	2 cut(s)	304, 760
PaeI	GCATGC	1 cut(s)	760
PaeR7I	CTCGAG	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	117, 175
PkrI	GCNGC	3 cut(s)	106, 430, 708
PluTI	GGCGCC	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	357, 612
PspPI	GGNCC	1 cut(s)	781
PspXI	VCTCGAGB	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	4 cut(s)	485, 543, 719, 777
SatI	GCNGC	3 cut(s)	105, 429, 707
Sau3AI	GATC	3 cut(s)	160, 322, 488
Sau96I	GGNCC	1 cut(s)	781
ScrFI	CCNGG	2 cut(s)	128, 501
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	265, 588
SfcI	CTRYAG	1 cut(s)	494
SfoI	GGCGCC	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	785
SlaI	CTCGAG	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	776, 785
SmoI	CTYRAG	2 cut(s)	776, 785
SpeI	ACTAGT	1 cut(s)	676
SphI	GCATGC	1 cut(s)	760
Sse9I	AATT	4 cut(s)	205, 326, 698, 861
SsiI	CCGC	6 cut(s)	13, 94, 105, 429, 707, 724
SspDI	GGCGCC	1 cut(s)	610
SspMI	CTAG	3 cut(s)	111, 677, 734
StyD4I	CCNGG	2 cut(s)	126, 499
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	271, 447
TaiI	ACGT	4 cut(s)	102, 172, 237, 336
TaqI	TCGA	3 cut(s)	156, 786, 793
TasI	AATT	4 cut(s)	205, 326, 698, 861
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	3 cut(s)	107, 431, 709
TfiI	GAWTC	2 cut(s)	117, 175
Tru1I	TTAA	4 cut(s)	485, 543, 719, 777
Tru9I	TTAA	4 cut(s)	485, 543, 719, 777
TspDTI	ATGAA	3 cut(s)	10, 32, 296
Vha464I	CTTAAG	1 cut(s)	776
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	2 cut(s)	304, 760
XhoI	CTCGAG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	3 cut(s)	111, 677, 734
ZraI	GACGTC	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.