Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Forward (+)

19770134 .. 19775366

Gene Structure 5233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1093000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGTTTTCGTGGTTGGTGTTAGTTCACAGTTAGGAAAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGGCAGCGGTGCCGTGGTGGTTGTAATTTCCATGGCGACCCTTCCCTCCTCCGTCTCCTCCTCTTCTCGTCCTCTACTTCCTCTCCGCCGCCCTCCTCCTATCTTCCGCTCCGTCACCACAACCACTAACTCCAGAACTAGAAGATTCTCAGCTCTAGTTTTCGCTTCTTCCGCTTCTCCTTTTGATGATCTTAGGCGCCCAATCCGGCCCCCCAAGTCCAAGAAGTCGGTTCTCTCAGATTTGATACAAGAGATAGAACCCTTGAACGTGAGCCTTATTCAGAAAGATGTTCCACCTACTACCGTGGATGCCATGAAAAGGACTATTTCAGGCATGTTGGGCTTACTTCCATCTGATCAATTTCAAGTTCTTATTGAGGCCTTATGGGAACCCCTCTCTAAGTTGTTGGTTTCTTCAATGATGACTGGGTATACTCTAAGGAATGCCGAATATAGGCTTTGTCTAGAACGGAATTTTGATCTATGTGAAGATAAGCTTGAAAAACAAACACCAGAAAATGGTAAAGTTGATTTGCAAGGGATGTTGCTTGAAAGTGCAAATATTATCAAATTTCCTGGAAAAGATAAGTTTTCTTCCAATGCTGGAGAAGTTACTGAAGACTCATTGGAGAATATTGATATTCAAGGCCTTGGTGAAGTGTCTCCTGAGGCTCAACAATATATTCTTCAGTTGCAGGCTCATTTATCTTCTGCCAAAAAGGAACTCCATGAAGTCAAGAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGGGAAGAAAAGAATGATTTGCTGGACTATTTGAGATCGTTACAGCCAGAAGAGGTAGCTGAGCTATCAGAACCAACGTCCCCTGAACTGAGAGAAATAATCCACTCTGTTATCCATGGTCTACTTGCAACCCTTTCTCCAAAGATGCATTCTAAAGCACCTCCTTCATCCGAGAGTGCCTCAGCTGGAGTAATAAATGGTGAGAGTGAAGATTGTGCGGAACTTGTTGAGAACACTTCACTTCATTTTCAGCCCCTTATTTCATTAACGCGGGACTACCTGGCACGTCTCCTCTTCTGGTGCATGCTGTTAGGACACTACCTGAAGGGTCTAGAGTATCGGATGGAGCTGACGGAGCTTCTGTCCCTGACAAGCAATGCTGAAAGCGATACCCCTGATGATGATCAAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

423

Amino Acids

46.95

Weight (kDa)

5.22

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	104 - 185	8.5e-26	Protein of unknown function (DUF760)
DUF760	PF05542	290 - 405	4.8e-24	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	86, 273
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	186
AccI	GTMKAC	2 cut(s)	509, 973
AccII	CGCG	1 cut(s)	1123
AciI	CCGC	7 cut(s)	84, 163, 166, 184, 249, 1070, 1123
AcsI	RAATTY	2 cut(s)	550, 647
AcuI	CTGAAG	3 cut(s)	714, 749, 1196
AcyI	GRCGYC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	396, 531, 596
AgsI	TTSAA	7 cut(s)	343, 443, 495, 578, 629, 722, 836
AjiI	CACGTC	1 cut(s)	1139
AjnI	CCWGG	2 cut(s)	652, 1131
AjuI	GAANNNNNNNTTGG	2 cut(s)	985, 1017
AluBI	AGCT	7 cut(s)	230, 574, 911, 916, 1037, 1201, 1210
AluI	AGCT	7 cut(s)	230, 574, 911, 916, 1037, 1201, 1210
Alw26I	GTCTC	3 cut(s)	136, 744, 1145
AoxI	GGCC	3 cut(s)	284, 456, 724
ApeKI	GCWGC	2 cut(s)	81, 827
ApoI	RAATTY	2 cut(s)	550, 647
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	184, 743, 1064
AxyI	CCTNAGG	1 cut(s)	744
BanI	GGYRCC	2 cut(s)	86, 273
BbsI	GAAGAC	1 cut(s)	702
BbvCI	CCTCAGC	1 cut(s)	1033
BbvI	GCAGC	2 cut(s)	93, 814
BccI	CCATC	2 cut(s)	436, 1189
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	654, 1133
BclI	TGATCA	2 cut(s)	433, 1255
BcoDI	GTCTC	3 cut(s)	136, 744, 1145
BfaI	CTAG	4 cut(s)	216, 233, 542, 1184
BfoI	RGCGCY	1 cut(s)	277
BisI	GCNGC	3 cut(s)	82, 166, 828
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	3 cut(s)	83, 167, 829
Bme1390I	CCNGG	2 cut(s)	654, 1133
BmgBI	CACGTC	1 cut(s)	1139
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	4 cut(s)	88, 275, 287, 468
BmrFI	CCNGG	2 cut(s)	654, 1133
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	376, 987
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	702
BplI	GAGNNNNNCTC	2 cut(s)	1016, 1048
BpmI	CTGGAG	3 cut(s)	193, 702, 1059
Bpu10I	CCTNAGC	1 cut(s)	1033
Bpu1102I	GCTNAGC	1 cut(s)	912
BsaBI	GATNNNNATC	1 cut(s)	1254
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	5 cut(s)	90, 108, 381, 727, 967
BsaXI	ACNNNNNCTCC	6 cut(s)	144, 174, 973, 1003, 1199, 1229
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 531, 596
Bse1I	ACTGG	1 cut(s)	508
Bse21I	CCTNAGG	1 cut(s)	744
Bse3DI	GCAATG	1 cut(s)	1234
Bse8I	GATNNNNATC	1 cut(s)	1254
BseBI	CCWGG	2 cut(s)	654, 1133
BseDI	CCNNGG	5 cut(s)	90, 108, 381, 727, 967
BseGI	GGATG	4 cut(s)	391, 624, 1019, 1200
BseJI	GATNNNNATC	1 cut(s)	1254
BseLI	CCNNNNNNNGG	3 cut(s)	396, 531, 596
BseMI	GCAATG	1 cut(s)	1234
BseMII	CTCAG	6 cut(s)	240, 327, 735, 903, 932, 1047
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	5 cut(s)	115, 124, 127, 162, 1133
BseXI	GCAGC	2 cut(s)	93, 814
Bsh1236I	CGCG	1 cut(s)	1123
BshFI	GGCC	3 cut(s)	286, 458, 726
BshNI	GGYRCC	2 cut(s)	86, 273
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	3 cut(s)	916, 1139, 1201
BslI	CCNNNNNNNGG	3 cut(s)	396, 531, 596
BsmAI	GTCTC	3 cut(s)	136, 744, 1145
BsmBI	CGTCTC	2 cut(s)	136, 1145
BsmFI	GGGAC	3 cut(s)	916, 1139, 1201
BsmI	GAATGC	2 cut(s)	526, 1000
BsnI	GGCC	3 cut(s)	286, 458, 726
Bsp143I	GATC	5 cut(s)	265, 433, 556, 887, 1255
Bsp1720I	GCTNAGC	1 cut(s)	912
Bsp19I	CCATGG	2 cut(s)	108, 967
BspACI	CCGC	7 cut(s)	84, 163, 166, 184, 249, 1070, 1123
BspANI	GGCC	3 cut(s)	286, 458, 726
BspCNI	CTCAG	6 cut(s)	239, 326, 736, 904, 933, 1046
BspFNI	CGCG	1 cut(s)	1123
BspLI	GGNNCC	4 cut(s)	88, 275, 287, 468
BspQI	GCTCTTC	1 cut(s)	837
BspT107I	GGYRCC	2 cut(s)	86, 273
BsrBI	CCGCTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	1234
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	5 cut(s)	90, 108, 381, 727, 967
BssMI	GATC	5 cut(s)	265, 433, 556, 887, 1255
BssNAI	GTATAC	1 cut(s)	510
BssNI	GRCGYC	1 cut(s)	274
BssT1I	CCWWGG	3 cut(s)	108, 727, 967
Bst1107I	GTATAC	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	654, 1133
Bst4CI	ACNGT	3 cut(s)	30, 382, 846
Bst6I	CTCTTC	4 cut(s)	145, 837, 897, 1151
BstACI	GRCGYC	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	774, 1157
BstDEI	CTNAG	9 cut(s)	226, 269, 313, 477, 515, 744, 912, 941, 1033
BstDSI	CCRYGG	4 cut(s)	90, 108, 381, 967
BstF5I	GGATG	4 cut(s)	391, 624, 1019, 1200
BstFNI	CGCG	1 cut(s)	1123
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	5 cut(s)	268, 436, 559, 890, 1258
BstMAI	GTCTC	3 cut(s)	136, 744, 1145
BstMBI	GATC	5 cut(s)	265, 433, 556, 887, 1255
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 417, 1207
BstNI	CCWGG	2 cut(s)	654, 1133
BstNSI	RCATGY	2 cut(s)	415, 1159
BstSCI	CCNGG	2 cut(s)	652, 1131
BstUI	CGCG	1 cut(s)	1123
BstV1I	GCAGC	2 cut(s)	93, 814
BstV2I	GAAGAC	1 cut(s)	702
BstZ17I	GTATAC	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	744
BsuRI	GGCC	3 cut(s)	286, 458, 726
BtgI	CCRYGG	4 cut(s)	90, 108, 381, 967
BtrI	CACGTC	1 cut(s)	1139
BtsCI	GGATG	4 cut(s)	391, 624, 1019, 1200
Cac8I	GCNNGC	2 cut(s)	774, 1157
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	285
CviAII	CATG	6 cut(s)	109, 391, 412, 806, 968, 1156
DdeI	CTNAG	9 cut(s)	226, 269, 313, 477, 515, 744, 912, 941, 1033
DinI	GGCGCC	1 cut(s)	275
DpnI	GATC	5 cut(s)	267, 435, 558, 889, 1257
DpnII	GATC	5 cut(s)	265, 433, 556, 887, 1255
Eam1104I	CTCTTC	4 cut(s)	145, 837, 897, 1151
EarI	CTCTTC	4 cut(s)	145, 837, 897, 1151
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	3 cut(s)	108, 727, 967
Eco147I	AGGCCT	2 cut(s)	458, 726
Eco57I	CTGAAG	3 cut(s)	714, 749, 1196
Eco81I	CCTNAGG	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	652, 1131
EcoT14I	CCWWGG	3 cut(s)	108, 727, 967
EcoT22I	ATGCAT	1 cut(s)	1002
EgeI	GGCGCC	1 cut(s)	275
EheI	GGCGCC	1 cut(s)	275
ErhI	CCWWGG	3 cut(s)	108, 727, 967
Esp3I	CGTCTC	2 cut(s)	136, 1145
FaeI	CATG	6 cut(s)	112, 394, 415, 809, 971, 1159
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	3 cut(s)	916, 1139, 1201
FatI	CATG	6 cut(s)	108, 390, 411, 805, 967, 1155
FauI	CCCGC	1 cut(s)	1116
FbaI	TGATCA	2 cut(s)	433, 1255
FblI	GTMKAC	2 cut(s)	509, 973
Fnu4HI	GCNGC	3 cut(s)	82, 166, 828
FokI	GGATG	4 cut(s)	398, 631, 1006, 1207
Fsp4HI	GCNGC	3 cut(s)	82, 166, 828
FspBI	CTAG	4 cut(s)	216, 233, 542, 1184
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	3 cut(s)	82, 166, 828
GsuI	CTGGAG	3 cut(s)	193, 702, 1059
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	286, 458, 726
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	6 cut(s)	112, 394, 415, 809, 971, 1159
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	2 cut(s)	222, 698
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	3 cut(s)	184, 743, 1064
Hpy166II	GTNNAC	3 cut(s)	26, 510, 974
Hpy188I	TCNGA	6 cut(s)	316, 360, 433, 922, 1024, 1194
Hpy188III	TCNNGA	5 cut(s)	210, 542, 743, 814, 1184
Hpy8I	GTNNAC	3 cut(s)	26, 510, 974
HpyAV	CCTTC	3 cut(s)	128, 1026, 1171
HpyCH4III	ACNGT	3 cut(s)	30, 382, 846
HpyCH4IV	ACGT	3 cut(s)	345, 929, 1138
HpyCH4V	TGCA	8 cut(s)	613, 635, 772, 841, 980, 1000, 1155, 1265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 417, 1207
HpyF3I	CTNAG	9 cut(s)	226, 269, 313, 477, 515, 744, 912, 941, 1033
HpySE526I	ACGT	3 cut(s)	345, 929, 1138
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	6 cut(s)	112, 394, 415, 809, 971, 1159
HspAI	GCGC	1 cut(s)	274
KasI	GGCGCC	1 cut(s)	273
Ksp22I	TGATCA	2 cut(s)	433, 1255
Kzo9I	GATC	5 cut(s)	265, 433, 556, 887, 1255
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	3 cut(s)	191, 1198, 1207
Lsp1109I	GCAGC	2 cut(s)	93, 814
LweI	GCATC	2 cut(s)	376, 987
MaeI	CTAG	4 cut(s)	216, 233, 542, 1184
MaeII	ACGT	3 cut(s)	345, 929, 1138
MaeIII	GTNAC	3 cut(s)	190, 688, 891
MalI	GATC	5 cut(s)	267, 435, 558, 889, 1257
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	5 cut(s)	265, 433, 556, 887, 1255
MluCI	AATT	4 cut(s)	102, 437, 550, 647
Mly113I	GGCGCC	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	692
Mph1103I	ATGCAT	1 cut(s)	1002
MseI	TTAA	1 cut(s)	1118
MspA1I	CMGCKG	2 cut(s)	84, 1037
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	654, 1133
Mva1269I	GAATGC	2 cut(s)	526, 1000
MvaI	CCWGG	2 cut(s)	654, 1133
MvnI	CGCG	1 cut(s)	1123
MwoI	GCNNNNNNNGC	3 cut(s)	248, 417, 1207
NarI	GGCGCC	1 cut(s)	274
NcoI	CCATGG	2 cut(s)	108, 967
NdeII	GATC	5 cut(s)	265, 433, 556, 887, 1255
NlaIII	CATG	6 cut(s)	112, 394, 415, 809, 971, 1159
NlaIV	GGNNCC	4 cut(s)	88, 275, 287, 468
NmuCI	GTSAC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	1002
NspI	RCATGY	2 cut(s)	415, 1159
PaeI	GCATGC	1 cut(s)	1159
PceI	AGGCCT	2 cut(s)	458, 726
PciSI	GCTCTTC	1 cut(s)	837
PctI	GAATGC	2 cut(s)	526, 1000
PfeI	GAWTC	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	652
PkrI	GCNGC	3 cut(s)	83, 167, 829
PleI	GAGTC	1 cut(s)	692
PluTI	GGCGCC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	652, 1131
PspGI	CCWGG	2 cut(s)	652, 1131
PspN4I	GGNNCC	4 cut(s)	88, 275, 287, 468
PspPI	GGNCC	1 cut(s)	285
PvuII	CAGCTG	1 cut(s)	1037
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	1 cut(s)	1118
SatI	GCNGC	3 cut(s)	82, 166, 828
Sau3AI	GATC	5 cut(s)	265, 433, 556, 887, 1255
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	654, 1133
SfaNI	GCATC	2 cut(s)	376, 987
SfoI	GGCGCC	1 cut(s)	275
SphI	GCATGC	1 cut(s)	1159
Sse9I	AATT	4 cut(s)	102, 437, 550, 647
SseBI	AGGCCT	2 cut(s)	458, 726
SsiI	CCGC	7 cut(s)	84, 163, 166, 184, 249, 1070, 1123
SspDI	GGCGCC	1 cut(s)	273
SspI	AATATT	2 cut(s)	640, 712
SspMI	CTAG	4 cut(s)	216, 233, 542, 1184
StuI	AGGCCT	2 cut(s)	458, 726
StyD4I	CCNGG	2 cut(s)	652, 1131
StyI	CCWWGG	3 cut(s)	108, 727, 967
TaaI	ACNGT	3 cut(s)	30, 382, 846
TaiI	ACGT	3 cut(s)	348, 932, 1141
TasI	AATT	4 cut(s)	102, 437, 550, 647
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	1118
Tru9I	TTAA	1 cut(s)	1118
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	81, 827
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	5 cut(s)	407, 822, 1008, 1085, 1104
TspGWI	ACGGA	4 cut(s)	118, 178, 562, 1220
Van91I	CCANNNNNTGG	1 cut(s)	596
XapI	RAATTY	2 cut(s)	550, 647
XbaI	TCTAGA	2 cut(s)	541, 1183
XceI	RCATGY	2 cut(s)	415, 1159
XmiI	GTMKAC	2 cut(s)	509, 973
XspI	CTAG	4 cut(s)	216, 233, 542, 1184
Zsp2I	ATGCAT	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.