Rh6DG058800

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010134
Physical Location & Seq
Reverse (-)
6026951 .. 6047938
20988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG058800.1

Sequence Viewer

Length: 822 bp
ATGGCCACTCTCCGCTCCTTCATCTCCTCCTCTTCTTCTCTTCCTCTACTCCCTCCTCCTCTGCTTCGCTCTCCTCCTCCTCCTATCTTCCGCCACGTCGCTACCCCTAGAAGATTCTCGCGCCTGGTTCTCGCTTCTTCTTCTTCTCCTTTCGACGATCTCAGACGTCCGATTCAATCCTCCAAGAAATTGGTTCTCTCAAATTTGATACAAGAGATAGAGCCCTTGAACGTGAGCCTAATCCAGAAAGATGTGCCACCTATGACTGTGGATGCTATGAAAAGAACTATTTCGGGCATGTTGGGCTTACTTCCATCTGATCAATTTCAAGTTGTTATTGAGGCTTTATGGGAACCGCTCTCCAAGTTGTTGGTTTCTTCGATGATGACTGGATATACTCTAAGGAATGCTGAATATAGACTTTGCCTAGAACGAAACTTTGATATAGCTGAAGAAAATCTTGAAAAGCAAACATCAGAAGATTCTAAAGTTGATTTACAAGGGATGTTGCTTGAAAGTGCAAATATAATCAAATTTCATGCAAAAGACGAGTTTTCACCTAAGGCTGGAGAAGTCATGGAAGACCCATTGGAGAATCTTGATATTCAAGGCCTCGGTGAAGTGTCACCTGAGGTTCAACAATATATTCTTCATTTGCAGGCTCATTTGTCTTCTGCCAAAAAGGAACTCCACGATGTCAAAAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGGGAAGAAAAGAATGATTTACTGGACTATTTAAGATCACTACAGCCCGAAAAGGTTTTTATTAATTTGTGCAACATACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

273

Amino Acids

30.79

Weight (kDa)

5.64

Isoelectric Point (pI)

70.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 66 - 147 3.5e-26 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 169
AccBSI CCGCTC 2 cut(s) 15, 358
AccII CGCG 1 cut(s) 121
AciI CCGC 3 cut(s) 13, 91, 356
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 202, 533
AcuI CTGAAG 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 8 cut(s) 176, 229, 329, 464, 515, 608, 638, 722
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
AoxI GGCC 2 cut(s) 3, 610
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 202, 533
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 549, 618, 629
AxyI CCTNAGG 2 cut(s) 561, 630
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 588, 663
BbvI GCAGC 1 cut(s) 700
BccI CCATC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 319
BfaI CTAG 2 cut(s) 108, 428
BfmI CTRYAG 1 cut(s) 779
BisI GCNGC 1 cut(s) 714
BlsI GCNGC 1 cut(s) 715
Bme1390I CCNGG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 588, 663
BpmI CTGGAG 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 613
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse1I ACTGG 2 cut(s) 394, 765
Bse21I CCTNAGG 2 cut(s) 561, 630
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 2 cut(s) 277, 510
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 2 cut(s) 175, 621
BseNI ACTGG 2 cut(s) 394, 765
BseRI GAGGAG 7 cut(s) 16, 19, 45, 48, 63, 66, 69
BseXI GCAGC 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 5, 612
BslI CCNNNNNNNGG 1 cut(s) 566
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 2 cut(s) 5, 612
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 157, 319, 773
BspACI CCGC 3 cut(s) 13, 91, 356
BspANI GGCC 2 cut(s) 5, 612
BspCNI CTCAG 2 cut(s) 174, 622
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 723
BsrBI CCGCTC 2 cut(s) 15, 358
BsrI ACTGG 2 cut(s) 394, 765
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 3 cut(s) 157, 319, 773
BssNI GRCGYC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 268, 732
Bst6I CTCTTC 3 cut(s) 37, 45, 723
BstACI GRCGYC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 4 cut(s) 161, 401, 561, 630
BstF5I GGATG 2 cut(s) 277, 510
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 160, 322, 776
BstMBI GATC 3 cut(s) 157, 319, 773
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 779
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 2 cut(s) 588, 663
BstXI CCANNNNNNTGG 2 cut(s) 190, 370
Bsu36I CCTNAGG 2 cut(s) 561, 630
BsuRI GGCC 2 cut(s) 5, 612
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 277, 510
Cac8I GCNNGC 1 cut(s) 660
CfoI GCGC 1 cut(s) 123
CviAII CATG 3 cut(s) 298, 539, 577
DdeI CTNAG 4 cut(s) 161, 401, 561, 630
DpnI GATC 3 cut(s) 159, 321, 775
DpnII GATC 3 cut(s) 157, 319, 773
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 37, 45, 723
EarI CTCTTC 3 cut(s) 37, 45, 723
EciI GGCGGA 1 cut(s) 80
Eco147I AGGCCT 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 471
Eco81I CCTNAGG 2 cut(s) 561, 630
EcoRII CCWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 3 cut(s) 301, 542, 580
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 3 cut(s) 297, 538, 576
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 714
FokI GGATG 2 cut(s) 284, 517
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 714
FspBI CTAG 2 cut(s) 108, 428
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 714
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 2 cut(s) 5, 612
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 3 cut(s) 301, 542, 580
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 4 cut(s) 114, 172, 482, 595
HphI GGTGA 3 cut(s) 549, 618, 629
Hpy188I TCNGA 4 cut(s) 164, 171, 319, 478
Hpy188III TCNNGA 3 cut(s) 244, 461, 599
Hpy99I CGWCG 2 cut(s) 101, 158
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 268, 732
HpyCH4IV ACGT 3 cut(s) 96, 166, 231
HpyCH4V TGCA 5 cut(s) 521, 542, 658, 727, 810
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 4 cut(s) 161, 401, 561, 630
HpySE526I ACGT 3 cut(s) 96, 166, 231
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 3 cut(s) 301, 542, 580
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 157, 319, 773
LguI GCTCTTC 1 cut(s) 723
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 110, 137, 257, 375, 552, 642, 644, 746
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 108, 428
MaeII ACGT 3 cut(s) 96, 166, 231
MaeIII GTNAC 1 cut(s) 624
MalI GATC 3 cut(s) 159, 321, 775
MbiI CCGCTC 2 cut(s) 15, 358
MboI GATC 3 cut(s) 157, 319, 773
MhlI GDGCHC 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 188, 202, 323, 533, 802
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 289
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 770, 801
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 303
NdeII GATC 3 cut(s) 157, 319, 773
NlaIII CATG 3 cut(s) 301, 542, 580
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 624
NspI RCATGY 1 cut(s) 301
PceI AGGCCT 1 cut(s) 612
PciSI GCTCTTC 1 cut(s) 723
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 4 cut(s) 114, 172, 482, 595
PkrI GCNGC 1 cut(s) 715
PshBI ATTAAT 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 723
SaqAI TTAA 2 cut(s) 770, 801
SatI GCNGC 1 cut(s) 714
Sau3AI GATC 3 cut(s) 157, 319, 773
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 225
SetI ASST 9 cut(s) 99, 169, 234, 262, 451, 562, 631, 636, 795
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 779
Sse9I AATT 5 cut(s) 188, 202, 323, 533, 802
SseBI AGGCCT 1 cut(s) 612
SsiI CCGC 3 cut(s) 13, 91, 356
SspMI CTAG 2 cut(s) 108, 428
StuI AGGCCT 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 268, 732
TaiI ACGT 3 cut(s) 99, 169, 234
TaqI TCGA 2 cut(s) 153, 380
TasI AATT 5 cut(s) 188, 202, 323, 533, 802
TfiI GAWTC 4 cut(s) 114, 172, 482, 595
Tru1I TTAA 2 cut(s) 770, 801
Tru9I TTAA 2 cut(s) 770, 801
TseFI GTSAC 1 cut(s) 624
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 624
TspDTI ATGAA 4 cut(s) 10, 293, 527, 641
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 2 cut(s) 202, 533
XceI RCATGY 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 2 cut(s) 108, 428
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.