Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Reverse (-)

9649112 .. 9653253

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCCACTCTCCGCTCCTTCATCTCCTCCTCTTCTTCTCTTCATCTACTCCCTCCTCCTCTGCTTCGCTTTTCTTCTCCTCCTCCTCCTCCTATCTTCCGCCACGTCGCCACCCCTAGAGGATTCTCGCGCCTGGTTCTCGCTTCTTCGGCTTCTCCTTTCGATGATCTCAGACGTCCGATTCAATCCTCCAAGAAATCGGTTCTCTCAAATTTGATACAAGAGATAGAGCCCTTGAACGTGAGCCTCATTCAGAAGGATGTTCCACCTATGACTGTGGATGCTATGAAAAGAACTATTTCAGGCATGTTGGGCTTACTTCCATCTGATCAATTTCACGTTGTTATTGAGGCTTTATGGGAACCACTCTCCAAGTTGTTGGTTTCTTCGATGATGACTGGATATACTCTAAGGAATGCTGAATATAGACTTTGCTTAGAACGAAACTTTGATATATATGAAGAAAATCTTGAAAAGCAAACATCAGAAGATTCTAACGTTGATTTACAAGGGATGCTGCTTGAAAGTGCAAATATAATCAAATTTCATGCAAAAGACGAGTTTTCACCTAAGGCTGGAGAAGTGATGGAAGACCCATTGGAGAATCTTGATATTCAAGGCCTCGGTGAAGTGTCACCTGAGGTTCAACAATATATTCTTCATTTGCAGGCTCATTTGTCTTCTGCCAAAAAGGAACTCCACGATGTCAAAAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGGGAAGAAAAGAATGATTTACTGGACTATTTAAGATCACTACAGCCCGAAAAGGTAGCTGAGCTATCAGAACCAACATCCCCTGAACTTAAAGAAATAATCCACTCTGTTGTCCATGGTCTACTTGCAACCCTTTCTCCAAAGATGCATTCTAAGGCGCCTCCTTTATCTGAGAATACCTCAGCTGGAGCAATAAATGTCGGAAGTGAAGATTGTACTGAACTAGTTGAAAACACATCACTTCAATTTCAGCCGCTTATTCTATTAACGCGGGACTACCTAGCACGCCTCCTCTTCTGGTGCATGCTGTTAGGACACTACCTTAAGGGCCTCGAGTATCGAATGGAGCTAACCGAACTTCTTGCCCTAACAAGCAATCCTGAAGGTGATACCCCTGATGGGCAACAAATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

387

Amino Acids

43.22

Weight (kDa)

5.18

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	69 - 150	1.2e-25	Protein of unknown function (DUF760)
DUF760	PF05542	255 - 370	2e-23	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	904
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	868
AccII	CGCG	2 cut(s)	130, 1018
AciI	CCGC	4 cut(s)	13, 100, 1001, 1018
AclI	AACGTT	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	211, 542
AcuI	CTGAAG	1 cut(s)	1149
AcyI	GRCGYC	2 cut(s)	175, 905
AfaI	GTAC	1 cut(s)	964
AfiI	CCNNNNNNNGG	2 cut(s)	575, 1146
AflII	CTTAAG	1 cut(s)	1070
AgsI	TTSAA	9 cut(s)	185, 238, 473, 524, 617, 647, 731, 977, 992
AhlI	ACTAGT	1 cut(s)	970
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AluBI	AGCT	4 cut(s)	806, 811, 932, 1096
AluI	AGCT	4 cut(s)	806, 811, 932, 1096
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	3 cut(s)	3, 619, 1075
ApeKI	GCWGC	2 cut(s)	517, 722
ApoI	RAATTY	2 cut(s)	211, 542
Asp700I	GAANNNNTTC	1 cut(s)	298
AspLEI	GCGC	2 cut(s)	132, 907
AspS9I	GGNCC	1 cut(s)	1075
AsuHPI	GGTGA	4 cut(s)	558, 627, 638, 1145
AvaI	CYCGRG	1 cut(s)	1079
AxyI	CCTNAGG	2 cut(s)	570, 639
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	597, 672
BbvCI	CCTCAGC	1 cut(s)	928
BbvI	GCAGC	2 cut(s)	504, 709
BccI	CCATC	3 cut(s)	331, 580, 1139
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	970
BfaI	CTAG	3 cut(s)	117, 971, 1028
BfmI	CTRYAG	1 cut(s)	788
BfoI	RGCGCY	1 cut(s)	908
BfrI	CTTAAG	1 cut(s)	1070
BisI	GCNGC	3 cut(s)	518, 723, 1001
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	3 cut(s)	519, 724, 1002
Bme1390I	CCNGG	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	1079
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	1075
BmiI	GGNNCC	2 cut(s)	363, 906
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	3 cut(s)	271, 504, 882
BpiI	GAAGAC	2 cut(s)	597, 672
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BpmI	CTGGAG	2 cut(s)	597, 954
Bpu10I	CCTNAGC	1 cut(s)	928
Bpu1102I	GCTNAGC	1 cut(s)	807
BsaHI	GRCGYC	2 cut(s)	175, 905
BsaJI	CCNNGG	2 cut(s)	622, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 1146
Bse1I	ACTGG	2 cut(s)	403, 774
Bse21I	CCTNAGG	2 cut(s)	570, 639
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	622, 862
BseGI	GGATG	4 cut(s)	265, 286, 519, 824
BseLI	CCNNNNNNNGG	2 cut(s)	575, 1146
BseMII	CTCAG	5 cut(s)	184, 630, 798, 909, 942
BseNI	ACTGG	2 cut(s)	403, 774
BseRI	GAGGAG	9 cut(s)	16, 19, 45, 48, 69, 72, 75, 78, 1028
BseXI	GCAGC	2 cut(s)	504, 709
Bsh1236I	CGCG	2 cut(s)	130, 1018
BshFI	GGCC	3 cut(s)	5, 621, 1077
BshNI	GGYRCC	1 cut(s)	904
BsiHKCI	CYCGRG	1 cut(s)	1079
BslFI	GGGAC	1 cut(s)	1034
BslI	CCNNNNNNNGG	2 cut(s)	575, 1146
BsmFI	GGGAC	1 cut(s)	1034
BsmI	GAATGC	2 cut(s)	421, 895
BsnI	GGCC	3 cut(s)	5, 621, 1077
BsoBI	CYCGRG	1 cut(s)	1079
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	166, 328, 782
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	4 cut(s)	13, 100, 1001, 1018
BspANI	GGCC	3 cut(s)	5, 621, 1077
BspCNI	CTCAG	5 cut(s)	183, 631, 799, 910, 941
BspFNI	CGCG	2 cut(s)	130, 1018
BspLI	GGNNCC	2 cut(s)	363, 906
BspQI	GCTCTTC	1 cut(s)	732
BspT107I	GGYRCC	1 cut(s)	904
BspTI	CTTAAG	1 cut(s)	1070
BsrBI	CCGCTC	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	403, 774
BssECI	CCNNGG	2 cut(s)	622, 862
BssMI	GATC	3 cut(s)	166, 328, 782
BssNI	GRCGYC	2 cut(s)	175, 905
BssT1I	CCWWGG	1 cut(s)	862
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	277, 741
Bst6I	CTCTTC	4 cut(s)	37, 45, 732, 1046
BstACI	GRCGYC	2 cut(s)	175, 905
BstAFI	CTTAAG	1 cut(s)	1070
BstC8I	GCNNGC	3 cut(s)	669, 1033, 1052
BstDEI	CTNAG	9 cut(s)	170, 410, 436, 570, 639, 807, 900, 918, 928
BstDSI	CCRYGG	1 cut(s)	862
BstF5I	GGATG	4 cut(s)	265, 286, 519, 824
BstFNI	CGCG	2 cut(s)	130, 1018
BstH2I	RGCGCY	1 cut(s)	908
BstHHI	GCGC	2 cut(s)	132, 907
BstKTI	GATC	3 cut(s)	169, 331, 785
BstMBI	GATC	3 cut(s)	166, 328, 782
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 312
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	310, 1054
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	788
BstUI	CGCG	2 cut(s)	130, 1018
BstV1I	GCAGC	2 cut(s)	504, 709
BstV2I	GAAGAC	2 cut(s)	597, 672
BstXI	CCANNNNNNTGG	1 cut(s)	379
Bsu36I	CCTNAGG	2 cut(s)	570, 639
BsuRI	GGCC	3 cut(s)	5, 621, 1077
BtgI	CCRYGG	1 cut(s)	862
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	4 cut(s)	265, 286, 519, 824
Cac8I	GCNNGC	3 cut(s)	669, 1033, 1052
CfoI	GCGC	2 cut(s)	132, 907
Cfr13I	GGNCC	1 cut(s)	1075
Csp6I	GTAC	1 cut(s)	963
CviAII	CATG	4 cut(s)	307, 548, 863, 1051
CviQI	GTAC	1 cut(s)	963
DdeI	CTNAG	9 cut(s)	170, 410, 436, 570, 639, 807, 900, 918, 928
DinI	GGCGCC	1 cut(s)	906
DpnI	GATC	3 cut(s)	168, 330, 784
DpnII	GATC	3 cut(s)	166, 328, 782
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	37, 45, 732, 1046
EarI	CTCTTC	4 cut(s)	37, 45, 732, 1046
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	862
Eco147I	AGGCCT	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	1149
Eco81I	CCTNAGG	2 cut(s)	570, 639
Eco88I	CYCGRG	1 cut(s)	1079
EcoO109I	RGGNCCY	1 cut(s)	1075
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	862
EcoT22I	ATGCAT	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	906
EheI	GGCGCC	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	862
FaeI	CATG	4 cut(s)	310, 551, 866, 1054
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	1034
FatI	CATG	4 cut(s)	306, 547, 862, 1050
FauI	CCCGC	1 cut(s)	1011
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	518, 723, 1001
FokI	GGATG	4 cut(s)	272, 293, 526, 811
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	518, 723, 1001
FspBI	CTAG	3 cut(s)	117, 971, 1028
GlaI	GCGC	2 cut(s)	131, 906
GluI	GCNGC	3 cut(s)	518, 723, 1001
GsuI	CTGGAG	2 cut(s)	597, 954
HaeII	RGCGCY	1 cut(s)	908
HaeIII	GGCC	3 cut(s)	5, 621, 1077
HhaI	GCGC	2 cut(s)	132, 907
Hin1I	GRCGYC	2 cut(s)	175, 905
Hin1II	CATG	4 cut(s)	310, 551, 866, 1054
Hin6I	GCGC	2 cut(s)	130, 905
HinP1I	GCGC	2 cut(s)	130, 905
HinfI	GANTC	4 cut(s)	123, 181, 491, 604
HphI	GGTGA	4 cut(s)	558, 627, 638, 1145
Hpy166II	GTNNAC	1 cut(s)	869
Hpy188I	TCNGA	8 cut(s)	173, 180, 255, 328, 487, 817, 919, 950
Hpy188III	TCNNGA	3 cut(s)	470, 608, 1127
Hpy8I	GTNNAC	1 cut(s)	869
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	28, 250, 1124
HpyCH4III	ACNGT	2 cut(s)	277, 741
HpyCH4IV	ACGT	5 cut(s)	105, 175, 240, 339, 498
HpyCH4V	TGCA	7 cut(s)	530, 551, 667, 736, 875, 895, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 312
HpyF3I	CTNAG	9 cut(s)	170, 410, 436, 570, 639, 807, 900, 918, 928
HpySE526I	ACGT	5 cut(s)	105, 175, 240, 339, 498
Hsp92I	GRCGYC	2 cut(s)	175, 905
Hsp92II	CATG	4 cut(s)	310, 551, 866, 1054
HspAI	GCGC	2 cut(s)	130, 905
KasI	GGCGCC	1 cut(s)	904
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	166, 328, 782
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	3 cut(s)	20, 935, 1093
Lsp1109I	GCAGC	2 cut(s)	504, 709
LweI	GCATC	3 cut(s)	271, 504, 882
MaeI	CTAG	3 cut(s)	117, 971, 1028
MaeII	ACGT	5 cut(s)	105, 175, 240, 339, 498
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	3 cut(s)	168, 330, 784
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	3 cut(s)	166, 328, 782
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	211, 332, 542, 992, 1155
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	905
MmeI	TCCRAC	1 cut(s)	928
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	897
MroXI	GAANNNNTTC	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	779, 837, 1013, 1071
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	932
MspCI	CTTAAG	1 cut(s)	1070
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	2 cut(s)	421, 895
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	2 cut(s)	130, 1018
MwoI	GCNNNNNNNGC	2 cut(s)	149, 312
NarI	GGCGCC	1 cut(s)	905
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	3 cut(s)	166, 328, 782
NlaIII	CATG	4 cut(s)	310, 551, 866, 1054
NlaIV	GGNNCC	2 cut(s)	363, 906
NmuCI	GTSAC	1 cut(s)	633
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	2 cut(s)	310, 1054
PaeI	GCATGC	1 cut(s)	1054
PaeR7I	CTCGAG	1 cut(s)	1079
PceI	AGGCCT	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	732
PctI	GAATGC	2 cut(s)	421, 895
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	4 cut(s)	123, 181, 491, 604
PkrI	GCNGC	3 cut(s)	519, 724, 1002
PluTI	GGCGCC	1 cut(s)	908
Psp1406I	AACGTT	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	363, 906
PspPI	GGNCC	1 cut(s)	1075
PspXI	VCTCGAGB	1 cut(s)	1079
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	1 cut(s)	964
RsaNI	GTAC	1 cut(s)	963
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	4 cut(s)	779, 837, 1013, 1071
SatI	GCNGC	3 cut(s)	518, 723, 1001
Sau3AI	GATC	3 cut(s)	166, 328, 782
Sau96I	GGNCC	1 cut(s)	1075
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	3 cut(s)	271, 504, 882
SfcI	CTRYAG	1 cut(s)	788
SfoI	GGCGCC	1 cut(s)	906
Sfr274I	CTCGAG	1 cut(s)	1079
SlaI	CTCGAG	1 cut(s)	1079
SmlI	CTYRAG	2 cut(s)	1070, 1079
SmoI	CTYRAG	2 cut(s)	1070, 1079
SpeI	ACTAGT	1 cut(s)	970
SphI	GCATGC	1 cut(s)	1054
Sse9I	AATT	5 cut(s)	211, 332, 542, 992, 1155
SseBI	AGGCCT	1 cut(s)	621
SsiI	CCGC	4 cut(s)	13, 100, 1001, 1018
SspDI	GGCGCC	1 cut(s)	904
SspMI	CTAG	3 cut(s)	117, 971, 1028
StuI	AGGCCT	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	862
TaaI	ACNGT	2 cut(s)	277, 741
TaiI	ACGT	5 cut(s)	108, 178, 243, 342, 501
TaqI	TCGA	4 cut(s)	162, 389, 1080, 1087
TasI	AATT	5 cut(s)	211, 332, 542, 992, 1155
TatI	WGTACW	1 cut(s)	962
TauI	GCSGC	1 cut(s)	1003
TfiI	GAWTC	4 cut(s)	123, 181, 491, 604
Tru1I	TTAA	4 cut(s)	779, 837, 1013, 1071
Tru9I	TTAA	4 cut(s)	779, 837, 1013, 1071
TseFI	GTSAC	1 cut(s)	633
TseI	GCWGC	2 cut(s)	517, 722
Tsp45I	GTSAC	1 cut(s)	633
TspDTI	ATGAA	6 cut(s)	10, 32, 302, 474, 536, 650
Vha464I	CTTAAG	1 cut(s)	1070
XapI	RAATTY	2 cut(s)	211, 542
XceI	RCATGY	2 cut(s)	310, 1054
XhoI	CTCGAG	1 cut(s)	1079
XmiI	GTMKAC	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	3 cut(s)	117, 971, 1028
ZraI	GACGTC	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.