Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006565.1

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Reverse (-)

23279 .. 27240

Gene Structure 3962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006565.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggccactctccgctccttcatctcctcctcttcttctcttcatctactccctcctcctctgcttcgcttttctcctcctcctcctatcttccgccacgtcgccacccctagaggattctcgcgcctggttctcgcttcttcggcttctcctttcgatgatctcagacgtccgattcaatcctccaagggaatttgtgaattatgtttgttgaattggggttcagtcgtcgagttgagctgcaatgaccttgagtttcgatatggtttagctggaattatgatacaagatgtagaactgaattgggaatatactctaaggaatgctgaatatagactttgcttagaacgaaactttgatatatctgaagaaaatcttgaaaagcaaacatcagaagattctaacgttgatttacaagggatgctgcttgaaagtgcaaatataatcaaatttcatgcaaaagacgagttttcacctaaggctggagaagtgatggaggacccattggagaatcttgatattcaaggcctcggtgaagtgtcacctgaggttcaacaatatattcttcatttgcaggctcatttgtcttctgccaaaaaggaactccacgatgtcaaaaggaaaagtgctgctcttcaaatgcaacagtttgttggggaagaaaagaatgatttactggactatttaagatcactacagcctgaaaaggtagctgagctatcagaaccaacatcccctgaacttaaagaaataatccactctgttgtccatggtctacttgcaaccctttctccaaagatgcattctaaggcgcctcctttatctgagaatacctcagctggagcaataaatgtcggaagtgaagattgtactgaactagttgaaaacacatcacttcaatttcagccgcttattctattaacgcgggactacctagcacgcctcctcttctggtgcatgctgttaggacactaccttaagggcctcgagtatcgaatggagctaaccgaacttcttgccctaacaagcaatcctgaaggtgatacccctgatgggcaacaaattgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

356

Amino Acids

39.91

Weight (kDa)

4.91

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	811
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	775
AccII	CGCG	2 cut(s)	124, 925
AciI	CCGC	4 cut(s)	13, 94, 908, 925
AclI	AACGTT	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	192, 449
AcuI	CTGAAG	2 cut(s)	387, 1056
AcyI	GRCGYC	2 cut(s)	169, 812
AfaI	GTAC	1 cut(s)	871
AfiI	CCNNNNNNNGG	2 cut(s)	482, 1053
AflII	CTTAAG	1 cut(s)	977
AgsI	TTSAA	9 cut(s)	179, 214, 380, 431, 524, 554, 638, 884, 899
AhlI	ACTAGT	1 cut(s)	877
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	787, 819
AluBI	AGCT	6 cut(s)	240, 272, 713, 718, 839, 1003
AluI	AGCT	6 cut(s)	240, 272, 713, 718, 839, 1003
Ama87I	CYCGRG	1 cut(s)	986
AoxI	GGCC	3 cut(s)	3, 526, 982
ApeKI	GCWGC	3 cut(s)	240, 424, 629
ApoI	RAATTY	2 cut(s)	192, 449
AspLEI	GCGC	2 cut(s)	126, 814
AspS9I	GGNCC	2 cut(s)	499, 982
AsuHPI	GGTGA	4 cut(s)	465, 534, 545, 1052
AvaI	CYCGRG	1 cut(s)	986
AvaII	GGWCC	1 cut(s)	499
AxyI	CCTNAGG	2 cut(s)	477, 546
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	811
BbsI	GAAGAC	1 cut(s)	579
BbvCI	CCTCAGC	1 cut(s)	835
BbvI	GCAGC	3 cut(s)	227, 411, 616
BccI	CCATC	2 cut(s)	487, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	998, 1032
BciT130I	CCWGG	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	877
BfaI	CTAG	3 cut(s)	111, 878, 935
BfmI	CTRYAG	1 cut(s)	695
BfoI	RGCGCY	1 cut(s)	815
BfrI	CTTAAG	1 cut(s)	977
BisI	GCNGC	4 cut(s)	241, 425, 630, 908
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	4 cut(s)	242, 426, 631, 909
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	1 cut(s)	986
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	499, 982
BmiI	GGNNCC	2 cut(s)	501, 813
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	411, 789
BpiI	GAAGAC	1 cut(s)	579
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
BpmI	CTGGAG	2 cut(s)	504, 861
Bpu10I	CCTNAGC	1 cut(s)	835
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	272
BsaHI	GRCGYC	2 cut(s)	169, 812
BsaJI	CCNNGG	3 cut(s)	186, 529, 769
BsaXI	ACNNNNNCTCC	2 cut(s)	775, 805
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 1053
Bse1I	ACTGG	1 cut(s)	681
Bse21I	CCTNAGG	2 cut(s)	477, 546
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	186, 529, 769
BseGI	GGATG	2 cut(s)	426, 731
BseLI	CCNNNNNNNGG	2 cut(s)	482, 1053
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	5 cut(s)	178, 537, 705, 816, 849
BseNI	ACTGG	1 cut(s)	681
BseRI	GAGGAG	8 cut(s)	16, 19, 45, 48, 66, 69, 72, 935
BseXI	GCAGC	3 cut(s)	227, 411, 616
Bsh1236I	CGCG	2 cut(s)	124, 925
BshFI	GGCC	3 cut(s)	5, 528, 984
BshNI	GGYRCC	1 cut(s)	811
BsiHKCI	CYCGRG	1 cut(s)	986
BslFI	GGGAC	1 cut(s)	941
BslI	CCNNNNNNNGG	2 cut(s)	482, 1053
BsmFI	GGGAC	1 cut(s)	941
BsmI	GAATGC	2 cut(s)	328, 802
BsnI	GGCC	3 cut(s)	5, 528, 984
BsoBI	CYCGRG	1 cut(s)	986
Bsp143I	GATC	2 cut(s)	160, 689
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	769
BspACI	CCGC	4 cut(s)	13, 94, 908, 925
BspANI	GGCC	3 cut(s)	5, 528, 984
BspCNI	CTCAG	5 cut(s)	177, 538, 706, 817, 848
BspFNI	CGCG	2 cut(s)	124, 925
BspLI	GGNNCC	2 cut(s)	501, 813
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	811
BspTI	CTTAAG	1 cut(s)	977
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	3 cut(s)	186, 529, 769
BssMI	GATC	2 cut(s)	160, 689
BssNI	GRCGYC	2 cut(s)	169, 812
BssT1I	CCWWGG	2 cut(s)	186, 769
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	4 cut(s)	37, 45, 639, 953
BstACI	GRCGYC	2 cut(s)	169, 812
BstAFI	CTTAAG	1 cut(s)	977
BstC8I	GCNNGC	3 cut(s)	576, 940, 959
BstDEI	CTNAG	9 cut(s)	164, 317, 343, 477, 546, 714, 807, 825, 835
BstDSI	CCRYGG	1 cut(s)	769
BstF5I	GGATG	2 cut(s)	426, 731
BstFNI	CGCG	2 cut(s)	124, 925
BstH2I	RGCGCY	1 cut(s)	815
BstHHI	GCGC	2 cut(s)	126, 814
BstKTI	GATC	2 cut(s)	163, 692
BstMBI	GATC	2 cut(s)	160, 689
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	961
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	2 cut(s)	124, 925
BstV1I	GCAGC	3 cut(s)	227, 411, 616
BstV2I	GAAGAC	1 cut(s)	579
Bsu36I	CCTNAGG	2 cut(s)	477, 546
BsuRI	GGCC	3 cut(s)	5, 528, 984
BtgI	CCRYGG	1 cut(s)	769
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	426, 731
Cac8I	GCNNGC	3 cut(s)	576, 940, 959
CfoI	GCGC	2 cut(s)	126, 814
Cfr13I	GGNCC	2 cut(s)	499, 982
Csp6I	GTAC	1 cut(s)	870
CviAII	CATG	3 cut(s)	455, 770, 958
CviQI	GTAC	1 cut(s)	870
DdeI	CTNAG	9 cut(s)	164, 317, 343, 477, 546, 714, 807, 825, 835
DinI	GGCGCC	1 cut(s)	813
DpnI	GATC	2 cut(s)	162, 691
DpnII	GATC	2 cut(s)	160, 689
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	37, 45, 639, 953
EarI	CTCTTC	4 cut(s)	37, 45, 639, 953
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	186, 769
Eco147I	AGGCCT	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	387, 1056
Eco81I	CCTNAGG	2 cut(s)	477, 546
Eco88I	CYCGRG	1 cut(s)	986
EcoO109I	RGGNCCY	2 cut(s)	499, 982
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	186, 769
EcoT22I	ATGCAT	1 cut(s)	804
EgeI	GGCGCC	1 cut(s)	813
EheI	GGCGCC	1 cut(s)	813
ErhI	CCWWGG	2 cut(s)	186, 769
FaeI	CATG	3 cut(s)	458, 773, 961
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	3 cut(s)	454, 769, 957
FauI	CCCGC	1 cut(s)	918
FblI	GTMKAC	1 cut(s)	775
Fnu4HI	GCNGC	4 cut(s)	241, 425, 630, 908
FokI	GGATG	2 cut(s)	433, 718
Fsp4HI	GCNGC	4 cut(s)	241, 425, 630, 908
FspBI	CTAG	3 cut(s)	111, 878, 935
GlaI	GCGC	2 cut(s)	125, 813
GluI	GCNGC	4 cut(s)	241, 425, 630, 908
GsuI	CTGGAG	2 cut(s)	504, 861
HaeII	RGCGCY	1 cut(s)	815
HaeIII	GGCC	3 cut(s)	5, 528, 984
HhaI	GCGC	2 cut(s)	126, 814
Hin1I	GRCGYC	2 cut(s)	169, 812
Hin1II	CATG	3 cut(s)	458, 773, 961
Hin6I	GCGC	2 cut(s)	124, 812
HinP1I	GCGC	2 cut(s)	124, 812
HinfI	GANTC	4 cut(s)	117, 175, 398, 511
HphI	GGTGA	4 cut(s)	465, 534, 545, 1052
Hpy166II	GTNNAC	1 cut(s)	776
Hpy188I	TCNGA	7 cut(s)	167, 174, 367, 394, 724, 826, 857
Hpy188III	TCNNGA	3 cut(s)	377, 515, 1034
Hpy8I	GTNNAC	1 cut(s)	776
Hpy99I	CGWCG	2 cut(s)	104, 233
HpyAV	CCTTC	2 cut(s)	28, 1031
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4IV	ACGT	3 cut(s)	99, 169, 405
HpyCH4V	TGCA	8 cut(s)	243, 437, 458, 574, 643, 782, 802, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	9 cut(s)	164, 317, 343, 477, 546, 714, 807, 825, 835
HpySE526I	ACGT	3 cut(s)	99, 169, 405
Hsp92I	GRCGYC	2 cut(s)	169, 812
Hsp92II	CATG	3 cut(s)	458, 773, 961
HspAI	GCGC	2 cut(s)	124, 812
KasI	GGCGCC	1 cut(s)	811
Kzo9I	GATC	2 cut(s)	160, 689
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	3 cut(s)	20, 842, 1000
Lsp1109I	GCAGC	3 cut(s)	227, 411, 616
LweI	GCATC	2 cut(s)	411, 789
MaeI	CTAG	3 cut(s)	111, 878, 935
MaeII	ACGT	3 cut(s)	99, 169, 405
MaeIII	GTNAC	1 cut(s)	540
MalI	GATC	2 cut(s)	162, 691
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	2 cut(s)	160, 689
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	192, 200, 214, 276, 301, 449, 899, 1062
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	812
MmeI	TCCRAC	1 cut(s)	835
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	804
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	686, 744, 920, 978
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	839
MspCI	CTTAAG	1 cut(s)	977
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	2 cut(s)	328, 802
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	124, 925
MwoI	GCNNNNNNNGC	1 cut(s)	143
NarI	GGCGCC	1 cut(s)	812
NcoI	CCATGG	1 cut(s)	769
NdeII	GATC	2 cut(s)	160, 689
NlaIII	CATG	3 cut(s)	458, 773, 961
NlaIV	GGNNCC	2 cut(s)	501, 813
NmuCI	GTSAC	1 cut(s)	540
NsiI	ATGCAT	1 cut(s)	804
NspI	RCATGY	1 cut(s)	961
PaeI	GCATGC	1 cut(s)	961
PaeR7I	CTCGAG	1 cut(s)	986
PceI	AGGCCT	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	639
PctI	GAATGC	2 cut(s)	328, 802
PfeI	GAWTC	4 cut(s)	117, 175, 398, 511
PkrI	GCNGC	4 cut(s)	242, 426, 631, 909
PluTI	GGCGCC	1 cut(s)	815
PpuMI	RGGWCCY	1 cut(s)	499
Psp1406I	AACGTT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	501, 813
PspPI	GGNCC	2 cut(s)	499, 982
PspPPI	RGGWCCY	1 cut(s)	499
PspXI	VCTCGAGB	1 cut(s)	986
PvuII	CAGCTG	1 cut(s)	839
RsaI	GTAC	1 cut(s)	871
RsaNI	GTAC	1 cut(s)	870
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	4 cut(s)	686, 744, 920, 978
SatI	GCNGC	4 cut(s)	241, 425, 630, 908
Sau3AI	GATC	2 cut(s)	160, 689
Sau96I	GGNCC	2 cut(s)	499, 982
ScrFI	CCNGG	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	411, 789
SfcI	CTRYAG	1 cut(s)	695
SfoI	GGCGCC	1 cut(s)	813
Sfr274I	CTCGAG	1 cut(s)	986
SinI	GGWCC	1 cut(s)	499
SlaI	CTCGAG	1 cut(s)	986
SmlI	CTYRAG	3 cut(s)	251, 977, 986
SmoI	CTYRAG	3 cut(s)	251, 977, 986
SpeI	ACTAGT	1 cut(s)	877
SphI	GCATGC	1 cut(s)	961
Sse9I	AATT	8 cut(s)	192, 200, 214, 276, 301, 449, 899, 1062
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	4 cut(s)	13, 94, 908, 925
SspDI	GGCGCC	1 cut(s)	811
SspMI	CTAG	3 cut(s)	111, 878, 935
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	2 cut(s)	186, 769
TaaI	ACNGT	1 cut(s)	648
TaiI	ACGT	3 cut(s)	102, 172, 408
TaqI	TCGA	5 cut(s)	156, 231, 259, 987, 994
TasI	AATT	8 cut(s)	192, 200, 214, 276, 301, 449, 899, 1062
TatI	WGTACW	1 cut(s)	869
TauI	GCSGC	1 cut(s)	910
TfiI	GAWTC	4 cut(s)	117, 175, 398, 511
Tru1I	TTAA	4 cut(s)	686, 744, 920, 978
Tru9I	TTAA	4 cut(s)	686, 744, 920, 978
TseFI	GTSAC	1 cut(s)	540
TseI	GCWGC	3 cut(s)	240, 424, 629
Tsp45I	GTSAC	1 cut(s)	540
TspDTI	ATGAA	4 cut(s)	10, 32, 443, 557
Vha464I	CTTAAG	1 cut(s)	977
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	2 cut(s)	192, 449
XceI	RCATGY	1 cut(s)	961
XhoI	CTCGAG	1 cut(s)	986
XmiI	GTMKAC	1 cut(s)	775
XspI	CTAG	3 cut(s)	111, 878, 935
ZraI	GACGTC	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.