Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010134

Physical Location & Seq

Genomic Coordinates Forward (+)

61297217 .. 61301201

Gene Structure 3985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGATCTCAGACGTCCGATTCAATCCTCCAAGAACTGAATTGGGAAAATCGGTTCTCTCAAATTTGATTCAAGAGATAGAGCCCTTGAACGTGAGCCTGATTCAGAAGGATGTTCCACCTACGACTGTGGATGCTATGAAAAGAACTATTTCGGGCATGTTGGGCTTACTTCCATCTGATCAGTTTCAAGTTGTTATTGAGGCTTTATGGGAGCCACTCTCCAAGTTGTTGGTTTCTTCGATGATGACTGGATATACTCTAAGGAATGCTGAATATAGACTTTGCTTAGAACGAAACTTTGATATATCTGAAGAAAATCTTGAAAAGCAAACATCAGAAGATTCTAAAGTTGATTTACAAGGGATGTTGCTTGAAAGTGCAAATATAATCAAATTTCATGCAAAAGACGAGTTTTCACCTAAGGCTGGAGAAGTCATGGAAGACCCATTGGAGAATCTTGATATTCAAGGCCTCAGTGAAGTGTCACCTGAGGTTCAACAATATATTCTTCACTTGCAGGCTCATTTGTCTTCTGCCAAAAAGGAACTCCACGATGTCAAAAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGGGAAGAAAAGAATGATTTACTGGACTATTTAAGATCACTACAGCCCGAAAAGGTAGCTGAGCTATCAGAACCAACATCCCCTGAACTTAAAGAAATAATCCACTCTGTTGTCCATGGTCTACTTGCAACCCTTTCTCCAAAGATGCATTCTAAGGCGCCTCCTTTATCTGAGAACACCTCAGCTGGAGCAATAAATGTCGGAAGTGAAGATTGTGCTGAACTAGTTGAAAACACATCACTTCAATTTCAGCCGCTTATTCTATTAACACGGGACTACCTAGCACGCCTCCTCTTCTGGTGCATGCTGTTAGGACACTACCTTAAGGGCCTCGAGTATCGAATGGAGCTAACCGAACTTCTTGCCCTGACAAGCAATCCTGAAGGTGATACCCTTGATGGGCAACAAATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

337

Amino Acids

37.74

Weight (kDa)

4.78

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	19 - 100	5.9e-26	Protein of unknown function (DUF760)
DUF760	PF05542	205 - 320	1.5e-23	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14910 AT2G14910
fragaria_vesca	FvH4_2g04720 FvH4_2g04720 FvH4_2g04720
malus_domestica	MD05G1093000.v1.1
prunus_persica	Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1 Prupe.8G138000_v2.0.a1
pyrus_communis	pycom05g09220
rosa_chinensis	RchiOBHm_Chr6g0254391
rosa_laevigata	RLG00000014917
rosa_multiflora	Rmu_sc0006565.1_g000004 Rmu_sc0007138.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210850
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG069000 Rh6BG061600 Rh6CG061800 Rh6DG058800
rosa_wichuraiana	Rw6G006060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	718
AciI	CCGC	1 cut(s)	851
AcsI	RAATTY	2 cut(s)	61, 392
AcuI	CTGAAG	2 cut(s)	330, 999
AcyI	GRCGYC	2 cut(s)	12, 755
AfiI	CCNNNNNNNGG	2 cut(s)	425, 996
AflII	CTTAAG	1 cut(s)	920
AhlI	ACTAGT	1 cut(s)	820
AjuI	GAANNNNNNNTTGG	2 cut(s)	730, 762
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	4 cut(s)	656, 661, 782, 946
AluI	AGCT	4 cut(s)	656, 661, 782, 946
Ama87I	CYCGRG	1 cut(s)	929
AoxI	GGCC	2 cut(s)	469, 925
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	61, 392
Asp700I	GAANNNNTTC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	757
AspS9I	GGNCC	1 cut(s)	925
AsuHPI	GGTGA	3 cut(s)	408, 477, 995
AvaI	CYCGRG	1 cut(s)	929
AxyI	CCTNAGG	2 cut(s)	420, 489
BanI	GGYRCC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	447, 522
BbvCI	CCTCAGC	1 cut(s)	778
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	2 cut(s)	181, 989
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BclI	TGATCA	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	2 cut(s)	821, 878
BfmI	CTRYAG	1 cut(s)	638
BfoI	RGCGCY	1 cut(s)	758
BfrI	CTTAAG	1 cut(s)	920
BisI	GCNGC	2 cut(s)	573, 851
BlpI	GCTNAGC	1 cut(s)	657
BlsI	GCNGC	2 cut(s)	574, 852
BmeT110I	CYCGRG	1 cut(s)	929
BmgT120I	GGNCC	1 cut(s)	925
BmiI	GGNNCC	2 cut(s)	213, 756
BmsI	GCATC	2 cut(s)	121, 732
BpiI	GAAGAC	2 cut(s)	447, 522
BplI	GAGNNNNNCTC	4 cut(s)	203, 235, 761, 793
BpmI	CTGGAG	2 cut(s)	447, 804
Bpu10I	CCTNAGC	1 cut(s)	778
Bpu1102I	GCTNAGC	1 cut(s)	657
BsaHI	GRCGYC	2 cut(s)	12, 755
BsaJI	CCNNGG	1 cut(s)	712
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 996
Bse1I	ACTGG	2 cut(s)	253, 624
Bse21I	CCTNAGG	2 cut(s)	420, 489
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	4 cut(s)	115, 136, 369, 674
BseLI	CCNNNNNNNGG	2 cut(s)	425, 996
BseMII	CTCAG	6 cut(s)	21, 480, 487, 648, 759, 792
BseNI	ACTGG	2 cut(s)	253, 624
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	1 cut(s)	559
BshFI	GGCC	2 cut(s)	471, 927
BshNI	GGYRCC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	929
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	425, 996
BsmFI	GGGAC	1 cut(s)	884
BsmI	GAATGC	2 cut(s)	271, 745
BsnI	GGCC	2 cut(s)	471, 927
BsoBI	CYCGRG	1 cut(s)	929
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	3, 178, 632
Bsp1720I	GCTNAGC	1 cut(s)	657
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	1 cut(s)	851
BspANI	GGCC	2 cut(s)	471, 927
BspCNI	CTCAG	6 cut(s)	20, 481, 486, 649, 760, 791
BspLI	GGNNCC	2 cut(s)	213, 756
BspQI	GCTCTTC	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	754
BspTI	CTTAAG	1 cut(s)	920
BsrI	ACTGG	2 cut(s)	253, 624
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	3 cut(s)	3, 178, 632
BssNI	GRCGYC	2 cut(s)	12, 755
BssT1I	CCWWGG	1 cut(s)	712
Bst4CI	ACNGT	2 cut(s)	127, 591
Bst6I	CTCTTC	2 cut(s)	582, 896
BstACI	GRCGYC	2 cut(s)	12, 755
BstAFI	CTTAAG	1 cut(s)	920
BstC8I	GCNNGC	3 cut(s)	519, 883, 902
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	4 cut(s)	115, 136, 369, 674
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	3 cut(s)	6, 181, 635
BstMBI	GATC	3 cut(s)	3, 178, 632
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNSI	RCATGY	2 cut(s)	160, 904
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	2 cut(s)	447, 522
BstXI	CCANNNNNNTGG	1 cut(s)	229
Bsu36I	CCTNAGG	2 cut(s)	420, 489
BsuRI	GGCC	2 cut(s)	471, 927
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	4 cut(s)	115, 136, 369, 674
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	3 cut(s)	519, 883, 902
CfoI	GCGC	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	925
CviAII	CATG	5 cut(s)	157, 398, 436, 713, 901
DinI	GGCGCC	1 cut(s)	756
DpnI	GATC	3 cut(s)	5, 180, 634
DpnII	GATC	3 cut(s)	3, 178, 632
Eam1104I	CTCTTC	2 cut(s)	582, 896
EarI	CTCTTC	2 cut(s)	582, 896
Eco130I	CCWWGG	1 cut(s)	712
Eco147I	AGGCCT	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	330, 999
Eco81I	CCTNAGG	2 cut(s)	420, 489
Eco88I	CYCGRG	1 cut(s)	929
EcoO109I	RGGNCCY	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	712
EcoT22I	ATGCAT	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	756
EheI	GGCGCC	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	5 cut(s)	160, 401, 439, 716, 904
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	5 cut(s)	156, 397, 435, 712, 900
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	718
Fnu4HI	GCNGC	2 cut(s)	573, 851
FokI	GGATG	4 cut(s)	122, 143, 376, 661
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	573, 851
FspBI	CTAG	2 cut(s)	821, 878
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	2 cut(s)	573, 851
GsuI	CTGGAG	2 cut(s)	447, 804
HaeII	RGCGCY	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	471, 927
HhaI	GCGC	1 cut(s)	757
Hin1I	GRCGYC	2 cut(s)	12, 755
Hin1II	CATG	5 cut(s)	160, 401, 439, 716, 904
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HinfI	GANTC	5 cut(s)	18, 67, 100, 341, 454
HphI	GGTGA	3 cut(s)	408, 477, 995
Hpy166II	GTNNAC	1 cut(s)	719
Hpy188I	TCNGA	9 cut(s)	10, 17, 105, 178, 310, 337, 667, 769, 800
Hpy188III	TCNNGA	4 cut(s)	71, 320, 458, 977
Hpy8I	GTNNAC	1 cut(s)	719
HpyAV	CCTTC	2 cut(s)	100, 974
HpyCH4III	ACNGT	2 cut(s)	127, 591
HpyCH4IV	ACGT	2 cut(s)	12, 90
HpyCH4V	TGCA	7 cut(s)	380, 401, 517, 586, 725, 745, 900
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	12, 90
Hsp92I	GRCGYC	2 cut(s)	12, 755
Hsp92II	CATG	5 cut(s)	160, 401, 439, 716, 904
HspAI	GCGC	1 cut(s)	755
KasI	GGCGCC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	3, 178, 632
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	3 cut(s)	211, 785, 943
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	2 cut(s)	121, 732
MaeI	CTAG	2 cut(s)	821, 878
MaeII	ACGT	2 cut(s)	12, 90
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	3 cut(s)	5, 180, 634
MboI	GATC	3 cut(s)	3, 178, 632
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	5 cut(s)	38, 61, 392, 842, 1005
Mly113I	GGCGCC	1 cut(s)	755
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	9 cut(s)	36, 193, 482, 484, 768, 787, 896, 899, 938
Mph1103I	ATGCAT	1 cut(s)	747
MroXI	GAANNNNTTC	1 cut(s)	148
MseI	TTAA	4 cut(s)	629, 687, 863, 921
MspA1I	CMGCKG	1 cut(s)	782
MspCI	CTTAAG	1 cut(s)	920
Mva1269I	GAATGC	2 cut(s)	271, 745
MwoI	GCNNNNNNNGC	1 cut(s)	162
NarI	GGCGCC	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	3 cut(s)	3, 178, 632
NlaIII	CATG	5 cut(s)	160, 401, 439, 716, 904
NlaIV	GGNNCC	2 cut(s)	213, 756
NmuCI	GTSAC	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	747
NspI	RCATGY	2 cut(s)	160, 904
PaeI	GCATGC	1 cut(s)	904
PaeR7I	CTCGAG	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	582
PctI	GAATGC	2 cut(s)	271, 745
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	5 cut(s)	18, 67, 100, 341, 454
PkrI	GCNGC	2 cut(s)	574, 852
PluTI	GGCGCC	1 cut(s)	758
PspN4I	GGNNCC	2 cut(s)	213, 756
PspPI	GGNCC	1 cut(s)	925
PspXI	VCTCGAGB	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	629, 687, 863, 921
SatI	GCNGC	2 cut(s)	573, 851
Sau3AI	GATC	3 cut(s)	3, 178, 632
Sau96I	GGNCC	1 cut(s)	925
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	121, 732
SfcI	CTRYAG	1 cut(s)	638
SfoI	GGCGCC	1 cut(s)	756
Sfr274I	CTCGAG	1 cut(s)	929
SlaI	CTCGAG	1 cut(s)	929
SmlI	CTYRAG	2 cut(s)	920, 929
SmoI	CTYRAG	2 cut(s)	920, 929
SpeI	ACTAGT	1 cut(s)	820
SphI	GCATGC	1 cut(s)	904
Sse9I	AATT	5 cut(s)	38, 61, 392, 842, 1005
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	851
SspDI	GGCGCC	1 cut(s)	754
SspMI	CTAG	2 cut(s)	821, 878
StuI	AGGCCT	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	2 cut(s)	127, 591
TaiI	ACGT	2 cut(s)	15, 93
TaqI	TCGA	3 cut(s)	239, 930, 937
TasI	AATT	5 cut(s)	38, 61, 392, 842, 1005
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	5 cut(s)	18, 67, 100, 341, 454
Tru1I	TTAA	4 cut(s)	629, 687, 863, 921
Tru9I	TTAA	4 cut(s)	629, 687, 863, 921
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	2 cut(s)	152, 386
TspRI	CASTG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	920
XapI	RAATTY	2 cut(s)	61, 392
XceI	RCATGY	2 cut(s)	160, 904
XhoI	CTCGAG	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	718
XmnI	GAANNNNTTC	1 cut(s)	148
XspI	CTAG	2 cut(s)	821, 878
ZraI	GACGTC	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.