FvH4_2g05560

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013606
Physical Location & Seq
Reverse (-)
4576556 .. 4577260
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05560.t1

Sequence Viewer

Length: 705 bp
ATGTCCCTCACCGAGATCACAGCCATCTCCAATGTTCTAAGCACCTGCTCCCACACGTGTAACTTCCTCGTCTTCGGCCTCACGCACGAGTCCCTCCTCTGGCACGCCCTCAACCTCAACGGCCGAACCGTCTTCCTCGACGACAACGAGTTCCTCATCTCCAAGTTCGAACAGTCCCACCCATACCACGGCATCGAAGCCTACGACGTGTCGTTCGCCACCAGGGTCAAGGACTTCAAGTCCCTCCTCTCCGCCGCCAAGTCTCAACTCCAACACGACTGTCGTCCGGTGCAGAACTTGTTGTTTTCCGACTGCAAGCTCGGGATCAACGACATGCCGAATCACATATACCAAGTCCCTTGGGATGTGATCTTGGTGGACGGCCCAAGTGGGTATTCTCCGGCGTCGCCTGGTAGGATGGCACCGATTTTCACCGCCGGAGTTTTAGCCCGGAGCAAGAAGGGCGGCGGGGACAAGACCCATGTTTTCGTTCACGATATTTTTAGAAATGTTGAGAGGGTTAGTAGCGACGAGTTTCTTTGCCGGGAAAACTTGGTGGAGGCTGTGGATTTGTTGGGGCATTTTGTTGTGGAGAAAATGGAAGATAACAGATTTGAGTTTTGTAGAAACTCGGCATTATCATCATTACGGTCTTCATCTGAATCATCAGGGAATGAAGACGGTGATGATGATGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

235

Amino Acids

26.12

Weight (kDa)

4.97

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 5 - 195 3.2e-77 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05560
malus_domestica MD05G1091700.v1.1
prunus_persica Prupe.8G131100_v2.0.a1
pyrus_communis pycom05g08580 pycom14g01040
rosa_chinensis RchiOBHm_Chr6g0255871
rosa_laevigata RLG00000014807
rosa_multiflora Rmu_sc0001738.1_g000001 Rmu_sc0001738.1_g000002
rosa_roxburghii Rroxscaffold_7G00209580
rosa_rugosa Rorug05G0500200 Rorug05G0561900
rosa_samantha Rh6AG080200 Rh6CG005900 Rh6CG071000 Rh6DG006100 Rh6DG068300
rosa_wichuraiana Rw6G006920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 5 cut(s) 252, 255, 435, 465, 468
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 121
AcvI CACGTG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 99, 188
AflIII ACRYGT 3 cut(s) 54, 56, 207
AgsI TTSAA 1 cut(s) 238
AhdI GACNNNNNGTC 1 cut(s) 238
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 2 cut(s) 221, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 76, 121, 382
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspS9I GGNCC 1 cut(s) 383
AsuC2I CCSGG 2 cut(s) 451, 545
AsuHPI GGTGA 2 cut(s) 424, 695
AsuII TTCGAA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 421
BauI CACGAG 1 cut(s) 86
BbrPI CACGTG 1 cut(s) 57
BbsI GAAGAC 4 cut(s) 64, 124, 645, 684
BccI CCATC 2 cut(s) 32, 412
BceAI ACGGC 3 cut(s) 136, 205, 397
BciT130I CCWGG 2 cut(s) 223, 411
BcnI CCSGG 2 cut(s) 451, 545
BcoDI GTCTC 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 2 cut(s) 255, 466
BlsI GCNGC 2 cut(s) 256, 467
Bme1390I CCNGG 4 cut(s) 223, 411, 451, 545
BmeRI GACNNNNNGTC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 4 cut(s) 223, 411, 451, 545
BmsI GCATC 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 282
BpiI GAAGAC 4 cut(s) 64, 124, 645, 684
Bpu14I TTCGAA 1 cut(s) 168
BpuMI CCSGG 2 cut(s) 451, 545
BsaAI YACGTR 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 187, 222, 359
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 188
BseBI CCWGG 2 cut(s) 223, 411
BseDI CCNNGG 3 cut(s) 187, 222, 359
BseGI GGATG 2 cut(s) 370, 423
BseLI CCNNNNNNNGG 2 cut(s) 99, 188
BseRI GAGGAG 2 cut(s) 86, 236
BseX3I CGGCCG 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 78, 123, 384
BshNI GGYRCC 1 cut(s) 421
BsiEI CGRYCG 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 5 cut(s) 287, 401, 438, 451, 544
BslFI GGGAC 5 cut(s) 76, 160, 226, 341, 485
BslI CCNNNNNNNGG 2 cut(s) 99, 188
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 5 cut(s) 76, 160, 226, 341, 485
BsnI GGCC 3 cut(s) 78, 123, 384
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 3 cut(s) 15, 324, 369
BspACI CCGC 5 cut(s) 252, 255, 435, 465, 468
BspANI GGCC 3 cut(s) 78, 123, 384
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 421
BssECI CCNNGG 3 cut(s) 187, 222, 359
BssMI GATC 3 cut(s) 15, 324, 369
BssNI GRCGYC 1 cut(s) 404
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 223, 411
Bst4CI ACNGT 5 cut(s) 130, 174, 281, 651, 683
BstACI GRCGYC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 105, 317
BstDEI CTNAG 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 370, 423
BstKTI GATC 3 cut(s) 18, 327, 372
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 3 cut(s) 15, 324, 369
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 462
BstNI CCWGG 2 cut(s) 223, 411
BstNSI RCATGY 1 cut(s) 337
BstPAI GACNNNNGTC 1 cut(s) 282
BstSCI CCNGG 4 cut(s) 221, 409, 449, 543
BstV2I GAAGAC 4 cut(s) 64, 124, 645, 684
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 3 cut(s) 78, 123, 384
BtgI CCRYGG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 370, 423
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 105, 317
Cfr13I GGNCC 1 cut(s) 383
CseI GACGC 1 cut(s) 393
CviAII CATG 2 cut(s) 334, 482
CviJI RGCY 8 cut(s) 23, 78, 123, 200, 319, 384, 449, 563
CviKI_1 RGCY 8 cut(s) 23, 78, 123, 200, 319, 384, 449, 563
DdeI CTNAG 1 cut(s) 38
DpnI GATC 3 cut(s) 17, 326, 371
DpnII GATC 3 cut(s) 15, 324, 369
DriI GACNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
Eam1105I GACNNNNNGTC 1 cut(s) 238
EciI GGCGGA 1 cut(s) 241
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 359
Eco52I CGGCCG 1 cut(s) 121
Eco72I CACGTG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 221, 409
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 337, 485
FaiI YATR 5 cut(s) 184, 335, 347, 349, 483
FaqI GGGAC 5 cut(s) 76, 160, 226, 341, 485
FatI CATG 2 cut(s) 333, 481
FauI CCCGC 1 cut(s) 461
Fnu4HI GCNGC 2 cut(s) 255, 466
FokI GGATG 2 cut(s) 377, 430
Fsp4HI GCNGC 2 cut(s) 255, 466
GluI GCNGC 2 cut(s) 255, 466
HaeIII GGCC 3 cut(s) 78, 123, 384
HapII CCGG 5 cut(s) 287, 401, 438, 451, 544
HgaI GACGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 2 cut(s) 337, 485
HinfI GANTC 3 cut(s) 89, 340, 662
HpaII CCGG 5 cut(s) 287, 401, 438, 451, 544
HphI GGTGA 2 cut(s) 424, 695
Hpy166II GTNNAC 2 cut(s) 379, 493
Hpy188I TCNGA 2 cut(s) 310, 661
Hpy188III TCNNGA 2 cut(s) 322, 494
Hpy8I GTNNAC 2 cut(s) 379, 493
Hpy99I CGWCG 4 cut(s) 143, 209, 409, 533
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 5 cut(s) 130, 174, 281, 651, 683
HpyCH4IV ACGT 2 cut(s) 56, 207
HpyCH4V TGCA 2 cut(s) 292, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 462
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 56, 207
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 2 cut(s) 337, 485
Kzo9I GATC 3 cut(s) 15, 324, 369
LmnI GCTCC 2 cut(s) 53, 453
LweI GCATC 1 cut(s) 201
MaeII ACGT 2 cut(s) 56, 207
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 17, 326, 371
MboI GATC 3 cut(s) 15, 324, 369
MboII GAAGA 5 cut(s) 64, 124, 614, 645, 689
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 295, 333
MseI TTAA 1 cut(s) 703
MspI CCGG 5 cut(s) 287, 401, 438, 451, 544
MspR9I CCNGG 4 cut(s) 223, 411, 451, 545
MvaI CCWGG 2 cut(s) 223, 411
MwoI GCNNNNNNNGC 1 cut(s) 462
NciI CCSGG 2 cut(s) 451, 545
NdeII GATC 3 cut(s) 15, 324, 369
NlaIII CATG 2 cut(s) 337, 485
NlaIV GGNNCC 1 cut(s) 423
NmeAIII GCCGAG 1 cut(s) 611
NspI RCATGY 1 cut(s) 337
NspV TTCGAA 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 144, 201, 327
PfeI GAWTC 2 cut(s) 340, 662
PkrI GCNGC 2 cut(s) 256, 467
PleI GAGTC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 57
PmlI CACGTG 1 cut(s) 57
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 57
PshAI GACNNNNGTC 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 221, 409
PspCI CACGTG 1 cut(s) 57
PspGI CCWGG 2 cut(s) 221, 409
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 703
SatI GCNGC 2 cut(s) 255, 466
Sau3AI GATC 3 cut(s) 15, 324, 369
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 4 cut(s) 223, 411, 451, 545
SetI ASST 5 cut(s) 47, 59, 117, 210, 321
SfaNI GCATC 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 168
SsiI CCGC 5 cut(s) 252, 255, 435, 465, 468
StyD4I CCNGG 4 cut(s) 221, 409, 449, 543
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 5 cut(s) 130, 174, 281, 651, 683
TaiI ACGT 2 cut(s) 59, 210
TaqI TCGA 3 cut(s) 138, 168, 195
TauI GCSGC 2 cut(s) 257, 468
TfiI GAWTC 2 cut(s) 340, 662
Tru1I TTAA 1 cut(s) 703
Tru9I TTAA 1 cut(s) 703
TspDTI ATGAA 2 cut(s) 645, 690
XceI RCATGY 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.