Prupe.8G131100_v2.0.a1

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013606
Physical Location & Seq
Forward (+)
15362332 .. 15363638
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G131100.1

Sequence Viewer

Length: 966 bp
ATGAAGACCAACACCACAACCACCAACACAAACACAAAGCTCATCCTCCTCCACCCCTCATCAATCCACAAATCCAGCACAAATGGAGGAAGCCCTCACCGGCTATGGCTGCTCTTCTTCTTCACCTTCTTCACCCTCGCATTCACTCTCACTCTCATAAACACCACCATCCCACAAACCCTCCCCAACTCCACCCTCACGCCCACCTCTACAATCCCACTCCAGCCGCCCATCCTCGATGCTCTTCTTCACTACGCCACTTCGTCGAACACCTCGTCTACAACCCACATGTCCGCGCCAGAGGTCACCACCATATCCTCCACCCTCACCCGCCTCTGCGCACCAACCTGCAATTTCCTCATTTTTGGGCTCACCCACGAGTCCCTCCTCTACCTCGCCCTCAATCTCAACGGCCGCACCGTCTTCCTCGACGAGAGCGAGTTCTTGGTCTCCAGGTTCGAACAGTCCCATCCCCACCACACCCCCGAAGCATACGACGTGTCGTACACGACCCAGGTCAAAGATCATAAACAATTGCTCTCAACGACCAGAAGCCAAGTCAAAAACGAGTGCCGGCCGGTCCAGAATCTGCTGTTCTCGGACTGCAAGATTGGGATCAACGACTTGCCGAACCACATATACCAGGTCCCTTGGGATGTGATTTTGGTCGACGGGCCACGTGGGTACTCGCCGGCTGCGCCTGGGCGGATGGCGGCGATCTTCACCGCCGGAGTTTTGGCTCGGAGCAAAAGGGGCGGCAGAGCCACGACCCATGTGTTTGTCCACGATTTAAACAGAGAGGTTGAGAGGGTTTTTAGCGACGAGTTTCTTTGCCGGGAAAACTTGGTGGAGGCTGTGGATAGCTTGGGGCATTTTGTTGTGGAGAAAATGGAAGATCATAATAGCTTTAAATTTTGCAGAAATCCAACATCATCGCCATCGTCAAAGGGGGATGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

322

Amino Acids

35.8

Weight (kDa)

6.42

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05560
malus_domestica MD05G1091700.v1.1
prunus_persica Prupe.8G131100_v2.0.a1
pyrus_communis pycom05g08580 pycom14g01040
rosa_chinensis RchiOBHm_Chr6g0255871
rosa_laevigata RLG00000014807
rosa_multiflora Rmu_sc0001738.1_g000001 Rmu_sc0001738.1_g000002
rosa_roxburghii Rroxscaffold_7G00209580
rosa_rugosa Rorug05G0500200 Rorug05G0561900
rosa_samantha Rh6AG080200 Rh6CG005900 Rh6CG071000 Rh6DG006100 Rh6DG068300
rosa_wichuraiana Rw6G006920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 356
AccI GTMKAC 2 cut(s) 278, 669
AccII CGCG 1 cut(s) 296
AciI CCGC 8 cut(s) 227, 294, 331, 415, 706, 713, 726, 756
AclWI GGATC 1 cut(s) 623
AcoI YGGCCR 2 cut(s) 412, 575
AcsI RAATTY 1 cut(s) 911
AcvI CACGTG 1 cut(s) 680
AfaI GTAC 2 cut(s) 506, 686
AflIII ACRYGT 2 cut(s) 288, 498
AjiI CACGTC 1 cut(s) 499
AjnI CCWGG 4 cut(s) 452, 513, 642, 700
AluBI AGCT 3 cut(s) 40, 864, 906
AluI AGCT 3 cut(s) 40, 864, 906
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 1 cut(s) 623
AlwNI CAGNNNCTG 1 cut(s) 589
AoxI GGCC 3 cut(s) 412, 575, 674
ApeKI GCWGC 2 cut(s) 109, 695
ApoI RAATTY 1 cut(s) 911
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 3 cut(s) 298, 341, 700
AspS9I GGNCC 3 cut(s) 580, 646, 674
AsuC2I CCSGG 1 cut(s) 836
AsuHPI GGTGA 7 cut(s) 89, 115, 124, 298, 319, 364, 715
AsuII TTCGAA 1 cut(s) 459
AvaII GGWCC 2 cut(s) 580, 646
BanII GRGCYC 1 cut(s) 372
BauI CACGAG 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 11, 415
BbvI GCAGC 2 cut(s) 96, 682
BccI CCATC 5 cut(s) 176, 239, 477, 703, 946
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 4 cut(s) 454, 515, 644, 702
BcnI CCSGG 1 cut(s) 836
BcoDI GTCTC 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 6 cut(s) 110, 227, 415, 696, 714, 757
BlsI GCNGC 6 cut(s) 111, 228, 416, 697, 715, 758
Bme1390I CCNGG 5 cut(s) 454, 515, 644, 702, 836
Bme18I GGWCC 2 cut(s) 580, 646
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 3 cut(s) 580, 646, 674
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 5 cut(s) 454, 515, 644, 702, 836
BmsI GCATC 1 cut(s) 229
BoxI GACNNNNGTC 1 cut(s) 515
BpiI GAAGAC 2 cut(s) 11, 415
BpmI CTGGAG 2 cut(s) 206, 436
Bpu14I TTCGAA 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 836
BsaAI YACGTR 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 3 cut(s) 513, 650, 701
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse118I RCCGGY 4 cut(s) 99, 573, 577, 691
Bse8I GATNNNNATC 1 cut(s) 614
BseBI CCWGG 4 cut(s) 454, 515, 644, 702
BseDI CCNNGG 3 cut(s) 513, 650, 701
BseGI GGATG 7 cut(s) 42, 168, 231, 469, 661, 714, 958
BseJI GATNNNNATC 1 cut(s) 614
BseRI GAGGAG 2 cut(s) 38, 377
BseX3I CGGCCG 2 cut(s) 412, 575
BseXI GCAGC 2 cut(s) 96, 682
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 2 cut(s) 415, 578
BshFI GGCC 3 cut(s) 414, 577, 676
BsiEI CGRYCG 2 cut(s) 415, 578
BsiSI CCGG 6 cut(s) 100, 574, 578, 692, 729, 835
BslFI GGGAC 3 cut(s) 367, 451, 632
BsmAI GTCTC 1 cut(s) 454
BsmFI GGGAC 3 cut(s) 367, 451, 632
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 3 cut(s) 414, 577, 676
Bso31I GGTCTC 1 cut(s) 454
Bsp119I TTCGAA 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 4 cut(s) 523, 615, 717, 895
BspACI CCGC 8 cut(s) 227, 294, 331, 415, 706, 713, 726, 756
BspANI GGCC 3 cut(s) 414, 577, 676
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 648
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 623
BspQI GCTCTTC 2 cut(s) 119, 249
BspT104I TTCGAA 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 454
BsrFI RCCGGY 4 cut(s) 99, 573, 577, 691
BssAI RCCGGY 4 cut(s) 99, 573, 577, 691
BssECI CCNNGG 3 cut(s) 513, 650, 701
BssMI GATC 4 cut(s) 523, 615, 717, 895
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 650
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 4 cut(s) 454, 515, 644, 702
Bst4CI ACNGT 2 cut(s) 421, 465
Bst6I CTCTTC 2 cut(s) 119, 249
BstBAI YACGTR 1 cut(s) 680
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 575, 693
BstEII GGTNACC 1 cut(s) 304
BstF5I GGATG 7 cut(s) 42, 168, 231, 469, 661, 714, 958
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 3 cut(s) 298, 341, 700
BstKTI GATC 4 cut(s) 526, 618, 720, 898
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 4 cut(s) 523, 615, 717, 895
BstMCI CGRYCG 2 cut(s) 415, 578
BstMWI GCNNNNNNNGC 3 cut(s) 109, 697, 753
BstNI CCWGG 4 cut(s) 454, 515, 644, 702
BstNSI RCATGY 1 cut(s) 292
BstPAI GACNNNNGTC 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 5 cut(s) 452, 513, 642, 700, 834
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 96, 682
BstV2I GAAGAC 2 cut(s) 11, 415
BstZI CGGCCG 2 cut(s) 412, 575
BsuRI GGCC 3 cut(s) 414, 577, 676
BtgZI GCGATG 1 cut(s) 918
BtrI CACGTC 1 cut(s) 499
BtsCI GGATG 7 cut(s) 42, 168, 231, 469, 661, 714, 958
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 575, 693
CaiI CAGNNNCTG 1 cut(s) 589
CfoI GCGC 3 cut(s) 298, 341, 700
Cfr10I RCCGGY 4 cut(s) 99, 573, 577, 691
Cfr13I GGNCC 3 cut(s) 580, 646, 674
CsiI ACCWGGT 1 cut(s) 642
Csp6I GTAC 2 cut(s) 505, 685
CviAII CATG 2 cut(s) 289, 773
CviQI GTAC 2 cut(s) 505, 685
DpnI GATC 4 cut(s) 525, 617, 719, 897
DpnII GATC 4 cut(s) 523, 615, 717, 895
DraI TTTAAA 2 cut(s) 792, 910
EaeI YGGCCR 2 cut(s) 412, 575
EagI CGGCCG 2 cut(s) 412, 575
Eam1104I CTCTTC 2 cut(s) 119, 249
EarI CTCTTC 2 cut(s) 119, 249
EciI GGCGGA 1 cut(s) 721
EclXI CGGCCG 2 cut(s) 412, 575
Eco130I CCWWGG 1 cut(s) 650
Eco24I GRGCYC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 454
Eco47I GGWCC 2 cut(s) 580, 646
Eco52I CGGCCG 2 cut(s) 412, 575
Eco72I CACGTG 1 cut(s) 680
Eco91I GGTNACC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 646
EcoO65I GGTNACC 1 cut(s) 304
EcoRII CCWGG 4 cut(s) 452, 513, 642, 700
EcoT14I CCWWGG 1 cut(s) 650
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 2 cut(s) 292, 776
FaqI GGGAC 3 cut(s) 367, 451, 632
FatI CATG 2 cut(s) 288, 772
FauI CCCGC 1 cut(s) 338
FblI GTMKAC 2 cut(s) 278, 669
Fnu4HI GCNGC 6 cut(s) 110, 227, 415, 696, 714, 757
FokI GGATG 6 cut(s) 29, 155, 218, 456, 668, 721
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 6 cut(s) 110, 227, 415, 696, 714, 757
FspI TGCGCA 1 cut(s) 340
GlaI GCGC 3 cut(s) 297, 340, 699
GluI GCNGC 6 cut(s) 110, 227, 415, 696, 714, 757
GsuI CTGGAG 2 cut(s) 206, 436
HaeIII GGCC 3 cut(s) 414, 577, 676
HapII CCGG 6 cut(s) 100, 574, 578, 692, 729, 835
HhaI GCGC 3 cut(s) 298, 341, 700
Hin1II CATG 2 cut(s) 292, 776
Hin6I GCGC 3 cut(s) 296, 339, 698
HinP1I GCGC 3 cut(s) 296, 339, 698
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 2 cut(s) 380, 586
HpaII CCGG 6 cut(s) 100, 574, 578, 692, 729, 835
HphI GGTGA 7 cut(s) 89, 115, 124, 298, 319, 364, 715
Hpy166II GTNNAC 4 cut(s) 279, 507, 670, 784
Hpy188I TCNGA 2 cut(s) 601, 744
Hpy188III TCNNGA 1 cut(s) 583
Hpy8I GTNNAC 4 cut(s) 279, 507, 670, 784
Hpy99I CGWCG 5 cut(s) 268, 434, 500, 674, 824
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 421, 465
HpyCH4IV ACGT 2 cut(s) 498, 679
HpyCH4V TGCA 3 cut(s) 351, 606, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 697, 753
HpySE526I ACGT 2 cut(s) 498, 679
Hsp92II CATG 2 cut(s) 292, 776
HspAI GCGC 3 cut(s) 296, 339, 698
KroI GCCGGC 2 cut(s) 573, 691
KroNI GCCGGC 2 cut(s) 575, 693
Kzo9I GATC 4 cut(s) 523, 615, 717, 895
LguI GCTCTTC 2 cut(s) 119, 249
LmnI GCTCC 1 cut(s) 744
Lsp1109I GCAGC 2 cut(s) 96, 682
LweI GCATC 1 cut(s) 229
MabI ACCWGGT 1 cut(s) 642
MaeII ACGT 2 cut(s) 498, 679
MaeIII GTNAC 1 cut(s) 304
MalI GATC 4 cut(s) 525, 617, 719, 897
MboI GATC 4 cut(s) 523, 615, 717, 895
MfeI CAATTG 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 3 cut(s) 352, 533, 911
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 950
MroNI GCCGGC 2 cut(s) 573, 691
MseI TTAA 3 cut(s) 791, 909, 964
MspI CCGG 6 cut(s) 100, 574, 578, 692, 729, 835
MspR9I CCNGG 5 cut(s) 454, 515, 644, 702, 836
MunI CAATTG 1 cut(s) 533
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 4 cut(s) 454, 515, 644, 702
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 109, 697, 753
NaeI GCCGGC 2 cut(s) 575, 693
NciI CCSGG 1 cut(s) 836
NdeII GATC 4 cut(s) 523, 615, 717, 895
NgoMIV GCCGGC 2 cut(s) 573, 691
NlaIII CATG 2 cut(s) 292, 776
NlaIV GGNNCC 1 cut(s) 648
NmuCI GTSAC 1 cut(s) 304
NsbI TGCGCA 1 cut(s) 340
NspI RCATGY 1 cut(s) 292
NspV TTCGAA 1 cut(s) 459
PciI ACATGT 1 cut(s) 288
PciSI GCTCTTC 2 cut(s) 119, 249
PcsI WCGNNNNNNNCGW 3 cut(s) 272, 417, 435
PctI GAATGC 1 cut(s) 140
PdiI GCCGGC 2 cut(s) 575, 693
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 6 cut(s) 111, 228, 416, 697, 715, 758
PleI GAGTC 1 cut(s) 388
PmaCI CACGTG 1 cut(s) 680
PmlI CACGTG 1 cut(s) 680
PpsI GAGTC 1 cut(s) 388
Ppu21I YACGTR 1 cut(s) 680
PpuMI RGGWCCY 1 cut(s) 646
PscI ACATGT 1 cut(s) 288
PshAI GACNNNNGTC 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 646
Psp6I CCWGG 4 cut(s) 452, 513, 642, 700
PspCI CACGTG 1 cut(s) 680
PspEI GGTNACC 1 cut(s) 304
PspGI CCWGG 4 cut(s) 452, 513, 642, 700
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 3 cut(s) 580, 646, 674
PspPPI RGGWCCY 1 cut(s) 646
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PstNI CAGNNNCTG 1 cut(s) 589
RsaI GTAC 2 cut(s) 506, 686
RsaNI GTAC 2 cut(s) 505, 685
SalI GTCGAC 1 cut(s) 668
SapI GCTCTTC 2 cut(s) 119, 249
SaqAI TTAA 3 cut(s) 791, 909, 964
SatI GCNGC 6 cut(s) 110, 227, 415, 696, 714, 757
Sau3AI GATC 4 cut(s) 523, 615, 717, 895
Sau96I GGNCC 3 cut(s) 580, 646, 674
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 5 cut(s) 454, 515, 644, 702, 836
SduI GDGCHC 1 cut(s) 372
SexAI ACCWGGT 1 cut(s) 642
SfaNI GCATC 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 459
SinI GGWCC 2 cut(s) 580, 646
Sse9I AATT 3 cut(s) 352, 533, 911
SsiI CCGC 8 cut(s) 227, 294, 331, 415, 706, 713, 726, 756
StyD4I CCNGG 5 cut(s) 452, 513, 642, 700, 834
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 2 cut(s) 421, 465
TaiI ACGT 2 cut(s) 501, 682
TaqI TCGA 5 cut(s) 237, 266, 429, 459, 669
TasI AATT 3 cut(s) 352, 533, 911
TauI GCSGC 4 cut(s) 229, 417, 716, 759
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 3 cut(s) 791, 909, 964
Tru9I TTAA 3 cut(s) 791, 909, 964
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 109, 695
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 580, 646
XapI RAATTY 1 cut(s) 911
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 2 cut(s) 278, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.