Rh6CG005900

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013606
Physical Location & Seq
Forward (+)
771304 .. 773323
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG005900.1

Sequence Viewer

Length: 1017 bp
ATGAAGACCACCACCACAACCACCACCGCCAACTCCAACACCAAGCTCATCCTCCTCCACCCTGCTTCCTCCAACTTCCACAAACCCACCACCAATGCCGCCGCTTCCGTCTCCCACCGCCTATGGCTCCTCTTCTTCTTCTTCACCTTCTTCACTCTCGCTTTCGCCCTCGCCCTCGCCCTCATCAACACCACCCTCCCCAACCCCACCTCTCTCTCCCCCACCTCCACTATCCCCCTCCCGCCCTCCGTCGCCGACGCGCTTCTCCACTACGCCATTTCCTCCAACGCCTCATCCGCATCGTCCCACATGTCCCTCTCCGAAATCACAGCCATCTCCACGGCCCTGACTGCCTGCTCGCACCGGTGTAGTTTCCTCGTCTTCGGCCTCACCCACGAGTCCCTCCTCTGGCACGCGCTCAATCTCAACGGCCGTACCGTCTTCCTCGACGACAGCGAGTTCCTCATCTCCAAGTTCGAACAGTCACACCCCTACCACGGAATCGAAGCGTACGACGTGTCGTTCACCACCACGGTCAAGGACTTCAGGTCCCTACTCTCCGCCACCAAGTCTCAAGTCCAAAACGACTGTCGTCCGGTGCAGAACTTGCTGTTTTCCGACTGCAAGCTCGGGATCAACGACTTGCCGAATCACATATACCAAGTCCCTTGGGATGTGATTTTGGTCGACGGGCCAAGTGGGTATTCTCAGTCGTCGCCGGGTCGGATGGCGCCGATTTTTACCGCCGGAGTTTTGGCCCGGAGCAAGAAGGGCGGCGGGGACAAGACCAATGTTTTTGTTCACGATTTTTCTAGAGAGGTTGAGAAGATTAGTAGCGACGAGTTTCTTTGCCGGGAAAACCTGGTGCAGGCTGTGGATTTGTTGGGCCATTTTGTTTTGGAGAAAATGGAAGATAACAGATTTGAGTTTTGTAGAAACTCGACATCATCATCACCATCACGATCTTGGTCTAAATCATCAGGGAATGAAGACGGTGATGATGATGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

338

Amino Acids

37.16

Weight (kDa)

5.67

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 108 - 298 7.9e-75 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05560
malus_domestica MD05G1091700.v1.1
prunus_persica Prupe.8G131100_v2.0.a1
pyrus_communis pycom05g08580 pycom14g01040
rosa_chinensis RchiOBHm_Chr6g0255871
rosa_laevigata RLG00000014807
rosa_multiflora Rmu_sc0001738.1_g000001 Rmu_sc0001738.1_g000002
rosa_roxburghii Rroxscaffold_7G00209580
rosa_rugosa Rorug05G0500200 Rorug05G0561900
rosa_samantha Rh6AG080200 Rh6CG005900 Rh6CG071000 Rh6DG006100 Rh6DG068300
rosa_wichuraiana Rw6G006920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 730
AccI GTMKAC 1 cut(s) 687
AccII CGCG 2 cut(s) 260, 416
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 731
AfaI GTAC 2 cut(s) 436, 512
AfiI CCNNNNNNNGG 3 cut(s) 408, 497, 868
AflIII ACRYGT 2 cut(s) 309, 516
AgeI ACCGGT 1 cut(s) 363
AhdI GACNNNNNGTC 1 cut(s) 547
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AluBI AGCT 2 cut(s) 46, 628
AluI AGCT 2 cut(s) 46, 628
Alw26I GTCTC 2 cut(s) 115, 576
AlwI GGATC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 6 cut(s) 342, 385, 430, 692, 756, 886
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
AsiGI ACCGGT 1 cut(s) 363
AspLEI GCGC 3 cut(s) 262, 418, 733
AspS9I GGNCC 5 cut(s) 343, 549, 692, 757, 886
AsuC2I CCSGG 3 cut(s) 720, 760, 854
AsuHPI GGTGA 5 cut(s) 136, 382, 517, 945, 1007
AsuII TTCGAA 1 cut(s) 477
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 1 cut(s) 549
BaeI ACNNNNGTAYC 2 cut(s) 418, 451
BanI GGYRCC 1 cut(s) 730
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 4 cut(s) 11, 373, 433, 996
BccI CCATC 3 cut(s) 341, 721, 964
BceAI ACGGC 3 cut(s) 357, 417, 445
BciT130I CCWGG 1 cut(s) 863
BcnI CCSGG 3 cut(s) 720, 760, 854
BcoDI GTCTC 2 cut(s) 115, 576
BfaI CTAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 734
BisI GCNGC 3 cut(s) 99, 102, 775
BlsI GCNGC 3 cut(s) 100, 103, 776
Bme1390I CCNGG 4 cut(s) 720, 760, 854, 863
Bme18I GGWCC 1 cut(s) 549
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 629
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 5 cut(s) 343, 549, 692, 757, 886
BmiI GGNNCC 3 cut(s) 128, 551, 732
BmrFI CCNGG 4 cut(s) 720, 760, 854, 863
BmsI GCATC 1 cut(s) 308
BoxI GACNNNNGTC 1 cut(s) 591
BpiI GAAGAC 4 cut(s) 11, 373, 433, 996
Bpu14I TTCGAA 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 3 cut(s) 720, 760, 854
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 4 cut(s) 339, 496, 531, 668
BsaWI WCCGGW 2 cut(s) 363, 595
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 497, 868
Bse118I RCCGGY 1 cut(s) 363
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 4 cut(s) 339, 496, 531, 668
BseGI GGATG 4 cut(s) 48, 293, 679, 732
BseLI CCNNNNNNNGG 3 cut(s) 408, 497, 868
BseMII CTCAG 1 cut(s) 722
BseRI GAGGAG 3 cut(s) 44, 119, 395
BseX3I CGGCCG 1 cut(s) 430
BsgI GTGCAG 2 cut(s) 620, 887
Bsh1236I CGCG 2 cut(s) 260, 416
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BshNI GGYRCC 1 cut(s) 730
BshTI ACCGGT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 6 cut(s) 364, 596, 719, 747, 760, 853
BsiWI CGTACG 1 cut(s) 510
BslFI GGGAC 6 cut(s) 289, 298, 385, 535, 650, 794
BslI CCNNNNNNNGG 3 cut(s) 408, 497, 868
BsmAI GTCTC 2 cut(s) 115, 576
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 6 cut(s) 289, 298, 385, 535, 650, 794
BsnI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BsoBI CYCGRG 1 cut(s) 629
Bsp119I TTCGAA 1 cut(s) 477
Bsp143I GATC 2 cut(s) 633, 962
BspANI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BspCNI CTCAG 1 cut(s) 721
BspFNI CGCG 2 cut(s) 260, 416
BspLI GGNNCC 3 cut(s) 128, 551, 732
BspPI GGATC 1 cut(s) 641
BspT104I TTCGAA 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 730
BsrFI RCCGGY 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 363
BssECI CCNNGG 4 cut(s) 339, 496, 531, 668
BssMI GATC 2 cut(s) 633, 962
BssNI GRCGYC 1 cut(s) 731
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 668
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 5 cut(s) 439, 483, 535, 590, 995
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 731
BstAPI GCANNNNNTGC 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 5 cut(s) 355, 359, 414, 626, 870
BstDEI CTNAG 1 cut(s) 708
BstDSI CCRYGG 3 cut(s) 339, 496, 531
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 4 cut(s) 48, 293, 679, 732
BstFNI CGCG 2 cut(s) 260, 416
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 3 cut(s) 262, 418, 733
BstKTI GATC 2 cut(s) 636, 965
BstMAI GTCTC 2 cut(s) 115, 576
BstMBI GATC 2 cut(s) 633, 962
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 4 cut(s) 296, 350, 607, 771
BstNI CCWGG 1 cut(s) 863
BstNSI RCATGY 1 cut(s) 313
BstPAI GACNNNNGTC 1 cut(s) 591
BstSCI CCNGG 4 cut(s) 718, 758, 852, 861
BstUI CGCG 2 cut(s) 260, 416
BstV2I GAAGAC 4 cut(s) 11, 373, 433, 996
BstZI CGGCCG 1 cut(s) 430
BsuRI GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
BtgI CCRYGG 3 cut(s) 339, 496, 531
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 4 cut(s) 48, 293, 679, 732
Cac8I GCNNGC 5 cut(s) 355, 359, 414, 626, 870
CfoI GCGC 3 cut(s) 262, 418, 733
Cfr10I RCCGGY 1 cut(s) 363
Cfr13I GGNCC 5 cut(s) 343, 549, 692, 757, 886
CseI GACGC 1 cut(s) 266
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 2 cut(s) 435, 511
CspAI ACCGGT 1 cut(s) 363
CviAII CATG 1 cut(s) 310
CviQI GTAC 2 cut(s) 435, 511
DdeI CTNAG 1 cut(s) 708
DinI GGCGCC 1 cut(s) 732
DpnI GATC 2 cut(s) 635, 964
DpnII GATC 2 cut(s) 633, 962
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 430
EagI CGGCCG 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 137
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 550
EclXI CGGCCG 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 549
Eco52I CGGCCG 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 668
EgeI GGCGCC 1 cut(s) 732
EheI GGCGCC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 668
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 313
FaiI YATR 4 cut(s) 124, 311, 656, 658
FaqI GGGAC 6 cut(s) 289, 298, 385, 535, 650, 794
FatI CATG 1 cut(s) 309
FauI CCCGC 2 cut(s) 249, 770
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 3 cut(s) 99, 102, 775
FokI GGATG 4 cut(s) 35, 280, 686, 739
Fsp4HI GCNGC 3 cut(s) 99, 102, 775
FspBI CTAG 1 cut(s) 813
GlaI GCGC 3 cut(s) 261, 417, 732
GluI GCNGC 3 cut(s) 99, 102, 775
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 6 cut(s) 344, 387, 432, 694, 758, 888
HapII CCGG 6 cut(s) 364, 596, 719, 747, 760, 853
HgaI GACGC 1 cut(s) 266
HhaI GCGC 3 cut(s) 262, 418, 733
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 3 cut(s) 260, 416, 731
HinP1I GCGC 3 cut(s) 260, 416, 731
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 3 cut(s) 398, 501, 649
HpaII CCGG 6 cut(s) 364, 596, 719, 747, 760, 853
HphI GGTGA 5 cut(s) 136, 382, 517, 945, 1007
Hpy166II GTNNAC 3 cut(s) 525, 688, 802
Hpy188I TCNGA 3 cut(s) 322, 619, 726
Hpy188III TCNNGA 4 cut(s) 631, 803, 813, 960
Hpy8I GTNNAC 3 cut(s) 525, 688, 802
Hpy99I CGWCG 7 cut(s) 254, 260, 452, 518, 692, 718, 842
HpyAV CCTTC 2 cut(s) 157, 763
HpyCH4III ACNGT 5 cut(s) 439, 483, 535, 590, 995
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 3 cut(s) 601, 624, 868
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 350, 607, 771
HpyF3I CTNAG 1 cut(s) 708
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 3 cut(s) 260, 416, 731
KasI GGCGCC 1 cut(s) 730
Kzo9I GATC 2 cut(s) 633, 962
LmnI GCTCC 2 cut(s) 132, 762
LweI GCATC 1 cut(s) 308
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 1 cut(s) 813
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 483
MalI GATC 2 cut(s) 635, 964
MboI GATC 2 cut(s) 633, 962
Mly113I GGCGCC 1 cut(s) 731
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 5 cut(s) 60, 96, 309, 642, 704
MseI TTAA 1 cut(s) 1015
MspI CCGG 6 cut(s) 364, 596, 719, 747, 760, 853
MspR9I CCNGG 4 cut(s) 720, 760, 854, 863
MvaI CCWGG 1 cut(s) 863
MvnI CGCG 2 cut(s) 260, 416
MwoI GCNNNNNNNGC 4 cut(s) 296, 350, 607, 771
NarI GGCGCC 1 cut(s) 731
NciI CCSGG 3 cut(s) 720, 760, 854
NdeII GATC 2 cut(s) 633, 962
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 3 cut(s) 128, 551, 732
NmuCI GTSAC 1 cut(s) 483
NspI RCATGY 1 cut(s) 313
NspV TTCGAA 1 cut(s) 477
PciI ACATGT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 4 cut(s) 435, 453, 510, 636
PfeI GAWTC 2 cut(s) 501, 649
Pfl23II CGTACG 1 cut(s) 510
PinAI ACCGGT 1 cut(s) 363
PkrI GCNGC 3 cut(s) 100, 103, 776
PleI GAGTC 1 cut(s) 406
PluTI GGCGCC 1 cut(s) 734
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 549
PscI ACATGT 1 cut(s) 309
PshAI GACNNNNGTC 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 861
PspGI CCWGG 1 cut(s) 861
PspLI CGTACG 1 cut(s) 510
PspN4I GGNNCC 3 cut(s) 128, 551, 732
PspPI GGNCC 5 cut(s) 343, 549, 692, 757, 886
PspPPI RGGWCCY 1 cut(s) 549
RsaI GTAC 2 cut(s) 436, 512
RsaNI GTAC 2 cut(s) 435, 511
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 1015
SatI GCNGC 3 cut(s) 99, 102, 775
Sau3AI GATC 2 cut(s) 633, 962
Sau96I GGNCC 5 cut(s) 343, 549, 692, 757, 886
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 4 cut(s) 720, 760, 854, 863
SetI ASST 9 cut(s) 48, 149, 212, 227, 519, 551, 630, 822, 864
SexAI ACCWGGT 1 cut(s) 861
SfaNI GCATC 1 cut(s) 308
SfoI GGCGCC 1 cut(s) 732
SfuI TTCGAA 1 cut(s) 477
SgrAI CRCCGGYG 1 cut(s) 363
SinI GGWCC 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
SspDI GGCGCC 1 cut(s) 730
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 4 cut(s) 718, 758, 852, 861
StyI CCWWGG 1 cut(s) 668
TaaI ACNGT 5 cut(s) 439, 483, 535, 590, 995
TaiI ACGT 1 cut(s) 519
TaqI TCGA 5 cut(s) 447, 477, 504, 687, 941
TauI GCSGC 3 cut(s) 101, 104, 777
TfiI GAWTC 2 cut(s) 501, 649
Tru1I TTAA 1 cut(s) 1015
Tru9I TTAA 1 cut(s) 1015
TseFI GTSAC 1 cut(s) 483
Tsp45I GTSAC 1 cut(s) 483
TspDTI ATGAA 2 cut(s) 17, 1002
TspGWI ACGGA 3 cut(s) 97, 238, 513
VpaK11BI GGWCC 1 cut(s) 549
XagI CCTNNNNNAGG 1 cut(s) 866
XbaI TCTAGA 1 cut(s) 812
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 963
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.