MD05G1091700.v1.1

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013606
Physical Location & Seq
Forward (+)
19413037 .. 19414002
966 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1091700.v1.1.491

Sequence Viewer

Length: 966 bp
ATGAAGACCACCAACAGCACTACCACCACCGCCAACACAAACACAAAACTCATCCTCCTCCACCCCCAAGCAATCCACAAACCCACCACAAGCGGCGGAAGCCACCGCCTGTGGCTCCTCTTCTTCTTCACCTTCTTTACCCTCGCATTCACCCTCACTCTCATCAGCACCACCATCCCCCAAACCCTCCCCACCTCCTCCCTCACCCCCAGCTCCGTACTCTCCCTCCCGCCCGCCGTCCTCGATGCACTTCTTCACTACGCCATTTCATCATCAAACACCTCGTCAGCACCCCACATGTCCCCGCCGGAACTCACCTCCATATCCTCCGCCCTCACCCGCCTCTGCGCACCCAACTGCAATTTCCTCGTTTTCGGCCTCACCCACGAGTCCCTCTTCTACCACACGCTCAACCTCAACGGCCGCACCGCTTTCGTCGATGAGAGCGAGTTCCTCGTCTCCCGATTCGAGCAGGCCCACTCCCACCACAGCCTCGAGGCGTACGACGTGTCATACGTGACCCAAGTCAAGGACCACAAACAATTGCTGTCAACGACCAAATCCCAGGTCAAAAACGAGTGCCGGCCGGTCCAGAACTTGTTGTTCTCGGACTGCAAGATCGGGATCAACGACTTGCCGAACCACATATATCAAGTCCCTTGGGATGTGATTCTGGTCGACGGCCCACGTGGGTATTCTCCGTCGTCTCCGGGGCGGATGTCGGCTATTTTCACCGCCGGAGTTTTAGCCCGGAGCAAGAGGGGCGGTGGGGATAAAACTCATGTTTTTGTTCATGATTTTTCGAGAGAGGTTGAGAGGATTTTTAGCGACGAGTTTCTTTGCCGGGAAAACTTGGTGGAGGCTGTGGGTAGTTTAGGGCATTTTGTGGTGGAGAAAATGGAGGATCATAGCTTTGAGTTTTGCAGAAATTCACCATCATCTTCAAAAGGGGACGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

322

Amino Acids

35.55

Weight (kDa)

6.23

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 104 - 295 8.5e-75 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05560
malus_domestica MD05G1091700.v1.1
prunus_persica Prupe.8G131100_v2.0.a1
pyrus_communis pycom05g08580 pycom14g01040
rosa_chinensis RchiOBHm_Chr6g0255871
rosa_laevigata RLG00000014807
rosa_multiflora Rmu_sc0001738.1_g000001 Rmu_sc0001738.1_g000002
rosa_roxburghii Rroxscaffold_7G00209580
rosa_rugosa Rorug05G0500200 Rorug05G0561900
rosa_samantha Rh6AG080200 Rh6CG005900 Rh6CG071000 Rh6DG006100 Rh6DG068300
rosa_wichuraiana Rw6G006920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 494
Acc16I TGCGCA 1 cut(s) 349
AccI GTMKAC 1 cut(s) 678
AclWI GGATC 2 cut(s) 632, 912
AcoI YGGCCR 2 cut(s) 421, 584
AcsI RAATTY 1 cut(s) 928
AcvI CACGTG 1 cut(s) 689
AfaI GTAC 2 cut(s) 219, 503
AfiI CCNNNNNNNGG 1 cut(s) 529
AflIII ACRYGT 2 cut(s) 297, 507
AgsI TTSAA 1 cut(s) 945
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 2 cut(s) 213, 912
AluI AGCT 2 cut(s) 213, 912
Alw26I GTCTC 2 cut(s) 463, 711
AlwI GGATC 2 cut(s) 632, 912
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 5 cut(s) 376, 421, 474, 584, 682
ApoI RAATTY 1 cut(s) 928
ArsI GACNNNNNNTTYG 4 cut(s) 269, 301, 552, 584
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 4 cut(s) 475, 532, 589, 683
AsuC2I CCSGG 3 cut(s) 711, 751, 845
AsuHPI GGTGA 8 cut(s) 121, 142, 196, 307, 328, 373, 724, 924
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 2 cut(s) 532, 589
BauI CACGAG 1 cut(s) 386
BbrPI CACGTG 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 2 cut(s) 182, 943
BceAI ACGGC 3 cut(s) 221, 436, 697
BcgI CGANNNNNNTGC 4 cut(s) 349, 383, 415, 449
BciT130I CCWGG 1 cut(s) 566
BcnI CCSGG 3 cut(s) 711, 751, 845
BcoDI GTCTC 2 cut(s) 463, 711
BisI GCNGC 2 cut(s) 94, 424
BlsI GCNGC 2 cut(s) 95, 425
Bme1390I CCNGG 4 cut(s) 566, 711, 751, 845
Bme18I GGWCC 2 cut(s) 532, 589
BmeT110I CYCGRG 1 cut(s) 494
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 4 cut(s) 475, 532, 589, 683
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 4 cut(s) 566, 711, 751, 845
BmsI GCATC 1 cut(s) 235
BoxI GACNNNNGTC 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 3 cut(s) 711, 751, 845
BsaAI YACGTR 2 cut(s) 517, 689
BsaBI GATNNNNATC 1 cut(s) 623
BsaJI CCNNGG 3 cut(s) 564, 659, 710
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 2 cut(s) 582, 586
Bse8I GATNNNNATC 1 cut(s) 623
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 3 cut(s) 564, 659, 710
BseGI GGATG 4 cut(s) 51, 174, 670, 723
BseJI GATNNNNATC 1 cut(s) 623
BseLI CCNNNNNNNGG 1 cut(s) 529
BseRI GAGGAG 3 cut(s) 47, 107, 187
BseX3I CGGCCG 2 cut(s) 421, 584
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 2 cut(s) 424, 587
BshFI GGCC 5 cut(s) 378, 423, 476, 586, 684
BsiEI CGRYCG 2 cut(s) 424, 587
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 7 cut(s) 308, 583, 587, 710, 738, 751, 844
BsiWI CGTACG 1 cut(s) 501
BslFI GGGAC 3 cut(s) 286, 376, 641
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 2 cut(s) 463, 711
BsmBI CGTCTC 2 cut(s) 463, 711
BsmFI GGGAC 3 cut(s) 286, 376, 641
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 5 cut(s) 378, 423, 476, 586, 684
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 3 cut(s) 618, 624, 904
BspANI GGCC 5 cut(s) 378, 423, 476, 586, 684
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 2 cut(s) 632, 912
BsrFI RCCGGY 2 cut(s) 582, 586
BssAI RCCGGY 2 cut(s) 582, 586
BssECI CCNNGG 3 cut(s) 564, 659, 710
BssMI GATC 3 cut(s) 618, 624, 904
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 659
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 566
Bst6I CTCTTC 2 cut(s) 125, 401
BstBAI YACGTR 2 cut(s) 517, 689
BstC8I GCNNGC 3 cut(s) 234, 474, 584
BstF5I GGATG 4 cut(s) 51, 174, 670, 723
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 3 cut(s) 621, 627, 907
BstMAI GTCTC 2 cut(s) 463, 711
BstMBI GATC 3 cut(s) 618, 624, 904
BstMCI CGRYCG 2 cut(s) 424, 587
BstMWI GCNNNNNNNGC 2 cut(s) 99, 762
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 301
BstPAI GACNNNNGTC 1 cut(s) 524
BstSCI CCNGG 4 cut(s) 564, 709, 749, 843
BstV2I GAAGAC 1 cut(s) 11
BstZI CGGCCG 2 cut(s) 421, 584
BsuRI GGCC 5 cut(s) 378, 423, 476, 586, 684
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 4 cut(s) 51, 174, 670, 723
Cac8I GCNNGC 3 cut(s) 234, 474, 584
CciI TCATGA 1 cut(s) 793
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 2 cut(s) 582, 586
Cfr13I GGNCC 4 cut(s) 475, 532, 589, 683
Csp6I GTAC 2 cut(s) 218, 502
CviAII CATG 3 cut(s) 298, 782, 794
CviQI GTAC 2 cut(s) 218, 502
DpnI GATC 3 cut(s) 620, 626, 906
DpnII GATC 3 cut(s) 618, 624, 904
EaeI YGGCCR 2 cut(s) 421, 584
EagI CGGCCG 2 cut(s) 421, 584
Eam1104I CTCTTC 2 cut(s) 125, 401
EarI CTCTTC 2 cut(s) 125, 401
EciI GGCGGA 3 cut(s) 111, 319, 730
EclXI CGGCCG 2 cut(s) 421, 584
Eco130I CCWWGG 1 cut(s) 659
Eco47I GGWCC 2 cut(s) 532, 589
Eco52I CGGCCG 2 cut(s) 421, 584
Eco72I CACGTG 1 cut(s) 689
Eco88I CYCGRG 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 659
ErhI CCWWGG 1 cut(s) 659
Esp3I CGTCTC 2 cut(s) 463, 711
FaeI CATG 3 cut(s) 301, 785, 797
FaiI YATR 8 cut(s) 299, 323, 514, 647, 649, 783, 795, 909
FaqI GGGAC 3 cut(s) 286, 376, 641
FatI CATG 3 cut(s) 297, 781, 793
FauI CCCGC 4 cut(s) 237, 241, 312, 347
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 2 cut(s) 94, 424
FokI GGATG 4 cut(s) 38, 161, 677, 730
Fsp4HI GCNGC 2 cut(s) 94, 424
FspI TGCGCA 1 cut(s) 349
GlaI GCGC 1 cut(s) 349
GluI GCNGC 2 cut(s) 94, 424
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 5 cut(s) 378, 423, 476, 586, 684
HapII CCGG 7 cut(s) 308, 583, 587, 710, 738, 751, 844
HhaI GCGC 1 cut(s) 350
Hin1II CATG 3 cut(s) 301, 785, 797
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 2 cut(s) 552, 679
HindII GTYRAC 2 cut(s) 552, 679
HinfI GANTC 3 cut(s) 389, 465, 670
HpaII CCGG 7 cut(s) 308, 583, 587, 710, 738, 751, 844
HphI GGTGA 8 cut(s) 121, 142, 196, 307, 328, 373, 724, 924
Hpy166II GTNNAC 2 cut(s) 552, 679
Hpy188I TCNGA 1 cut(s) 610
Hpy188III TCNNGA 5 cut(s) 462, 592, 622, 794, 804
Hpy8I GTNNAC 2 cut(s) 552, 679
Hpy99I CGWCG 5 cut(s) 440, 509, 683, 706, 833
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 3 cut(s) 507, 516, 688
HpyCH4V TGCA 4 cut(s) 248, 360, 615, 924
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 762
HpySE526I ACGT 3 cut(s) 507, 516, 688
Hsp92II CATG 3 cut(s) 301, 785, 797
HspAI GCGC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 582
KroNI GCCGGC 1 cut(s) 584
Kzo9I GATC 3 cut(s) 618, 624, 904
LmnI GCTCC 3 cut(s) 120, 218, 753
LweI GCATC 1 cut(s) 235
MaeII ACGT 3 cut(s) 507, 516, 688
MaeIII GTNAC 1 cut(s) 517
MalI GATC 3 cut(s) 620, 626, 906
MboI GATC 3 cut(s) 618, 624, 904
MboII GAAGA 7 cut(s) 16, 112, 115, 118, 245, 388, 933
MfeI CAATTG 1 cut(s) 542
MluCI AATT 3 cut(s) 361, 542, 928
MlyI GAGTC 1 cut(s) 398
MroNI GCCGGC 1 cut(s) 582
MseI TTAA 1 cut(s) 964
MspI CCGG 7 cut(s) 308, 583, 587, 710, 738, 751, 844
MspR9I CCNGG 4 cut(s) 566, 711, 751, 845
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 99, 762
NaeI GCCGGC 1 cut(s) 584
NciI CCSGG 3 cut(s) 711, 751, 845
NdeII GATC 3 cut(s) 618, 624, 904
NgoMIV GCCGGC 1 cut(s) 582
NlaIII CATG 3 cut(s) 301, 785, 797
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 517
NsbI TGCGCA 1 cut(s) 349
NspI RCATGY 1 cut(s) 301
PaeR7I CTCGAG 1 cut(s) 494
PagI TCATGA 1 cut(s) 793
PciI ACATGT 1 cut(s) 297
PcsI WCGNNNNNNNCGW 4 cut(s) 444, 501, 513, 627
PctI GAATGC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 584
PfeI GAWTC 2 cut(s) 465, 670
Pfl23II CGTACG 1 cut(s) 501
PkrI GCNGC 2 cut(s) 95, 425
PleI GAGTC 1 cut(s) 397
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 2 cut(s) 517, 689
PscI ACATGT 1 cut(s) 297
PshAI GACNNNNGTC 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 564
PspCI CACGTG 1 cut(s) 689
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 564
PspLI CGTACG 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 4 cut(s) 475, 532, 589, 683
PspXI VCTCGAGB 1 cut(s) 494
RsaI GTAC 2 cut(s) 219, 503
RsaNI GTAC 2 cut(s) 218, 502
SalI GTCGAC 1 cut(s) 677
SaqAI TTAA 1 cut(s) 964
SatI GCNGC 2 cut(s) 94, 424
Sau3AI GATC 3 cut(s) 618, 624, 904
Sau96I GGNCC 4 cut(s) 475, 532, 589, 683
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 4 cut(s) 566, 711, 751, 845
SfaNI GCATC 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 494
SinI GGWCC 2 cut(s) 532, 589
SlaI CTCGAG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 3 cut(s) 361, 542, 928
StyD4I CCNGG 4 cut(s) 564, 709, 749, 843
StyI CCWWGG 1 cut(s) 659
TaiI ACGT 3 cut(s) 510, 519, 691
TaqI TCGA 6 cut(s) 243, 438, 468, 495, 678, 803
TasI AATT 3 cut(s) 361, 542, 928
TauI GCSGC 2 cut(s) 96, 426
TfiI GAWTC 2 cut(s) 465, 670
Tru1I TTAA 1 cut(s) 964
Tru9I TTAA 1 cut(s) 964
TseFI GTSAC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 17, 258, 782
TspGWI ACGGA 2 cut(s) 205, 690
VpaK11BI GGWCC 2 cut(s) 532, 589
XapI RAATTY 1 cut(s) 928
XceI RCATGY 1 cut(s) 301
XhoI CTCGAG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.